EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000003851 (Gene tree)
Gene ID: 101156993
Gene Symbol: ptcd2
Alias: -
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 4490 bases
Position: chr12:7530028-7534517
Accession: 101156993
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000004809	MRP-S27	PF10037.9	8.3e-08	1	1
ENSORLP00000028900	MRP-S27	PF10037.9	1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000004810	-	1763	-	ENSORLP00000004809	365 (aa)	-	H2LFS0
ENSORLT00000030411	-	1838	XM_023961024	ENSORLP00000028900	390 (aa)	XP_023816792	UPI0009D9BD41

Gene Model

Click here to download ENSORLG00000003851's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000003851's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000003851	ptcd2	92	45.604	ENSG00000049883	PTCD2	100	42.365	Homo_sapiens
ENSORLG00000003851	ptcd2	98	71.540	ENSAPOG00000020682	ptcd2	100	71.540	Acanthochromis_polyacanthus
ENSORLG00000003851	ptcd2	88	44.798	ENSAMEG00000007194	PTCD2	89	44.798	Ailuropoda_melanoleuca
ENSORLG00000003851	ptcd2	88	66.092	ENSACIG00000002053	ptcd2	100	66.092	Amphilophus_citrinellus
ENSORLG00000003851	ptcd2	100	72.308	ENSAOCG00000006616	ptcd2	100	72.308	Amphiprion_ocellaris
ENSORLG00000003851	ptcd2	100	72.308	ENSAPEG00000022926	ptcd2	100	72.308	Amphiprion_percula
ENSORLG00000003851	ptcd2	92	47.765	ENSACAG00000009747	PTCD2	92	47.765	Anolis_carolinensis
ENSORLG00000003851	ptcd2	88	46.821	ENSANAG00000029353	PTCD2	89	46.991	Aotus_nancymaae
ENSORLG00000003851	ptcd2	100	73.333	ENSACLG00000027742	ptcd2	100	73.333	Astatotilapia_calliptera
ENSORLG00000003851	ptcd2	91	52.368	ENSAMXG00000029404	ptcd2	92	53.448	Astyanax_mexicanus
ENSORLG00000003851	ptcd2	88	47.110	ENSBTAG00000014675	PTCD2	90	47.110	Bos_taurus
ENSORLG00000003851	ptcd2	88	45.087	ENSCJAG00000016364	PTCD2	89	45.272	Callithrix_jacchus
ENSORLG00000003851	ptcd2	92	46.467	ENSCAFG00000007982	PTCD2	90	45.663	Canis_familiaris
ENSORLG00000003851	ptcd2	89	47.550	ENSCAFG00020019147	PTCD2	97	47.550	Canis_lupus_dingo
ENSORLG00000003851	ptcd2	88	47.399	ENSCHIG00000017118	PTCD2	90	47.399	Capra_hircus
ENSORLG00000003851	ptcd2	92	44.652	ENSCPOG00000040168	PTCD2	98	44.652	Cavia_porcellus
ENSORLG00000003851	ptcd2	88	46.821	ENSCCAG00000029389	-	89	46.991	Cebus_capucinus
ENSORLG00000003851	ptcd2	69	46.494	ENSCCAG00000021996	-	69	54.884	Cebus_capucinus
ENSORLG00000003851	ptcd2	95	45.722	ENSCATG00000019069	PTCD2	98	45.722	Cercocebus_atys
ENSORLG00000003851	ptcd2	88	46.532	ENSCLAG00000000072	PTCD2	90	46.532	Chinchilla_lanigera
ENSORLG00000003851	ptcd2	88	47.688	ENSCSAG00000015623	PTCD2	98	46.400	Chlorocebus_sabaeus
ENSORLG00000003851	ptcd2	70	51.765	ENSCHOG00000010634	PTCD2	73	51.765	Choloepus_hoffmanni
ENSORLG00000003851	ptcd2	91	43.539	ENSCPBG00000000216	PTCD2	91	43.539	Chrysemys_picta_bellii
ENSORLG00000003851	ptcd2	95	46.133	ENSCANG00000035636	PTCD2	96	46.133	Colobus_angolensis_palliatus
ENSORLG00000003851	ptcd2	98	44.473	ENSCGRG00001015289	Ptcd2	84	44.473	Cricetulus_griseus_chok1gshd
ENSORLG00000003851	ptcd2	98	44.473	ENSCGRG00000006193	Ptcd2	84	44.473	Cricetulus_griseus_crigri
ENSORLG00000003851	ptcd2	100	73.077	ENSCVAG00000001285	ptcd2	100	73.077	Cyprinodon_variegatus
ENSORLG00000003851	ptcd2	92	51.524	ENSDARG00000035391	ptcd2	94	51.524	Danio_rerio
ENSORLG00000003851	ptcd2	88	45.665	ENSDNOG00000008719	PTCD2	90	44.957	Dasypus_novemcinctus
ENSORLG00000003851	ptcd2	95	44.444	ENSDORG00000004921	Ptcd2	98	44.444	Dipodomys_ordii
ENSORLG00000003851	ptcd2	92	43.360	ENSETEG00000016542	PTCD2	95	43.360	Echinops_telfairi
ENSORLG00000003851	ptcd2	88	46.821	ENSEASG00005018038	PTCD2	91	46.821	Equus_asinus_asinus
ENSORLG00000003851	ptcd2	99	44.301	ENSECAG00000007022	PTCD2	99	44.301	Equus_caballus
ENSORLG00000003851	ptcd2	97	45.596	ENSEEUG00000014031	PTCD2	99	45.596	Erinaceus_europaeus
ENSORLG00000003851	ptcd2	98	59.896	ENSELUG00000003584	ptcd2	100	59.896	Esox_lucius
ENSORLG00000003851	ptcd2	81	46.032	ENSFCAG00000045432	PTCD2	74	46.032	Felis_catus
ENSORLG00000003851	ptcd2	84	42.202	ENSFALG00000010299	PTCD2	99	42.202	Ficedula_albicollis
ENSORLG00000003851	ptcd2	88	44.798	ENSFDAG00000018461	PTCD2	90	44.798	Fukomys_damarensis
ENSORLG00000003851	ptcd2	98	60.622	ENSGMOG00000003637	ptcd2	100	60.622	Gadus_morhua
ENSORLG00000003851	ptcd2	92	40.782	ENSGALG00000038260	PTCD2	94	40.782	Gallus_gallus
ENSORLG00000003851	ptcd2	88	49.422	ENSGAGG00000021952	PTCD2	89	49.422	Gopherus_agassizii
ENSORLG00000003851	ptcd2	92	45.604	ENSGGOG00000010695	PTCD2	94	45.604	Gorilla_gorilla
ENSORLG00000003851	ptcd2	100	72.821	ENSHBUG00000009191	ptcd2	100	72.821	Haplochromis_burtoni
ENSORLG00000003851	ptcd2	92	45.699	ENSHGLG00000001234	PTCD2	97	45.699	Heterocephalus_glaber_female
ENSORLG00000003851	ptcd2	92	45.699	ENSHGLG00100015419	PTCD2	97	45.699	Heterocephalus_glaber_male
ENSORLG00000003851	ptcd2	97	66.053	ENSHCOG00000001703	ptcd2	99	65.526	Hippocampus_comes
ENSORLG00000003851	ptcd2	83	57.143	ENSIPUG00000006080	ptcd2	90	56.232	Ictalurus_punctatus
ENSORLG00000003851	ptcd2	88	45.245	ENSSTOG00000006596	PTCD2	91	45.245	Ictidomys_tridecemlineatus
ENSORLG00000003851	ptcd2	88	46.686	ENSJJAG00000024388	Ptcd2	90	46.686	Jaculus_jaculus
ENSORLG00000003851	ptcd2	96	60.267	ENSKMAG00000009329	ptcd2	98	60.267	Kryptolebias_marmoratus
ENSORLG00000003851	ptcd2	100	65.128	ENSLBEG00000024871	ptcd2	99	65.128	Labrus_bergylta
ENSORLG00000003851	ptcd2	95	52.139	ENSLOCG00000011122	ptcd2	97	52.139	Lepisosteus_oculatus
ENSORLG00000003851	ptcd2	70	50.916	ENSLAFG00000004115	PTCD2	95	48.980	Loxodonta_africana
ENSORLG00000003851	ptcd2	95	46.400	ENSMFAG00000031516	PTCD2	96	46.400	Macaca_fascicularis
ENSORLG00000003851	ptcd2	94	46.070	ENSMNEG00000007537	PTCD2	96	46.070	Macaca_nemestrina
ENSORLG00000003851	ptcd2	95	45.867	ENSMLEG00000031093	PTCD2	96	45.867	Mandrillus_leucophaeus
ENSORLG00000003851	ptcd2	96	71.733	ENSMAMG00000018529	ptcd2	98	71.733	Mastacembelus_armatus
ENSORLG00000003851	ptcd2	100	73.333	ENSMZEG00005003625	ptcd2	100	73.333	Maylandia_zebra
ENSORLG00000003851	ptcd2	89	42.241	ENSMGAG00000005033	PTCD2	100	42.241	Meleagris_gallopavo
ENSORLG00000003851	ptcd2	88	46.330	ENSMAUG00000020253	Ptcd2	89	46.330	Mesocricetus_auratus
ENSORLG00000003851	ptcd2	92	44.932	ENSMICG00000004535	PTCD2	94	44.932	Microcebus_murinus
ENSORLG00000003851	ptcd2	92	46.049	ENSMOCG00000019985	Ptcd2	96	46.049	Microtus_ochrogaster
ENSORLG00000003851	ptcd2	91	44.225	ENSMODG00000001695	PTCD2	92	44.225	Monodelphis_domestica
ENSORLG00000003851	ptcd2	98	70.757	ENSMALG00000022372	ptcd2	100	70.757	Monopterus_albus
ENSORLG00000003851	ptcd2	92	45.504	MGP_CAROLIEiJ_G0018829	Ptcd2	96	45.504	Mus_caroli
ENSORLG00000003851	ptcd2	92	44.414	ENSMUSG00000021650	Ptcd2	96	44.414	Mus_musculus
ENSORLG00000003851	ptcd2	88	47.688	MGP_PahariEiJ_G0015904	Ptcd2	91	47.688	Mus_pahari
ENSORLG00000003851	ptcd2	92	45.232	MGP_SPRETEiJ_G0019711	Ptcd2	96	45.232	Mus_spretus
ENSORLG00000003851	ptcd2	88	46.243	ENSMPUG00000014401	PTCD2	90	46.243	Mustela_putorius_furo
ENSORLG00000003851	ptcd2	88	45.954	ENSMLUG00000007374	PTCD2	89	45.954	Myotis_lucifugus
ENSORLG00000003851	ptcd2	92	44.628	ENSNGAG00000005027	Ptcd2	95	43.956	Nannospalax_galili
ENSORLG00000003851	ptcd2	98	73.890	ENSNBRG00000008174	ptcd2	100	73.890	Neolamprologus_brichardi
ENSORLG00000003851	ptcd2	84	71.125	ENSNBRG00000000092	-	100	71.125	Neolamprologus_brichardi
ENSORLG00000003851	ptcd2	92	45.330	ENSNLEG00000004516	PTCD2	94	45.330	Nomascus_leucogenys
ENSORLG00000003851	ptcd2	88	46.110	ENSOPRG00000007290	PTCD2	89	45.954	Ochotona_princeps
ENSORLG00000003851	ptcd2	91	46.910	ENSODEG00000016417	PTCD2	93	46.910	Octodon_degus
ENSORLG00000003851	ptcd2	86	72.619	ENSONIG00000011269	ptcd2	98	72.619	Oreochromis_niloticus
ENSORLG00000003851	ptcd2	88	46.821	ENSOCUG00000007970	PTCD2	90	46.821	Oryctolagus_cuniculus
ENSORLG00000003851	ptcd2	98	98.956	ENSORLG00020009823	ptcd2	100	98.956	Oryzias_latipes_hni
ENSORLG00000003851	ptcd2	89	95.087	ENSORLG00015016777	ptcd2	99	95.087	Oryzias_latipes_hsok
ENSORLG00000003851	ptcd2	100	88.205	ENSOMEG00000012396	ptcd2	95	88.205	Oryzias_melastigma
ENSORLG00000003851	ptcd2	88	46.821	ENSOGAG00000008390	PTCD2	89	46.821	Otolemur_garnettii
ENSORLG00000003851	ptcd2	88	47.688	ENSOARG00000005087	PTCD2	89	47.688	Ovis_aries
ENSORLG00000003851	ptcd2	92	45.604	ENSPPAG00000028480	PTCD2	94	45.604	Pan_paniscus
ENSORLG00000003851	ptcd2	92	45.330	ENSPTRG00000016968	PTCD2	94	45.330	Pan_troglodytes
ENSORLG00000003851	ptcd2	88	47.246	ENSPANG00000006611	PTCD2	89	47.246	Papio_anubis
ENSORLG00000003851	ptcd2	88	54.441	ENSPKIG00000019896	ptcd2	90	54.441	Paramormyrops_kingsleyae
ENSORLG00000003851	ptcd2	80	46.795	ENSPSIG00000014559	PTCD2	97	46.645	Pelodiscus_sinensis
ENSORLG00000003851	ptcd2	92	47.154	ENSPEMG00000000884	Ptcd2	96	47.154	Peromyscus_maniculatus_bairdii
ENSORLG00000003851	ptcd2	98	45.876	ENSPCIG00000029047	PTCD2	100	45.619	Phascolarctos_cinereus
ENSORLG00000003851	ptcd2	98	68.930	ENSPLAG00000010456	ptcd2	100	68.930	Poecilia_latipinna
ENSORLG00000003851	ptcd2	98	69.713	ENSPREG00000021797	ptcd2	98	69.713	Poecilia_reticulata
ENSORLG00000003851	ptcd2	92	41.209	ENSPPYG00000015543	PTCD2	93	41.209	Pongo_abelii
ENSORLG00000003851	ptcd2	70	43.750	ENSPCAG00000006806	PTCD2	87	43.750	Procavia_capensis
ENSORLG00000003851	ptcd2	88	45.954	ENSPVAG00000010935	PTCD2	89	45.954	Pteropus_vampyrus
ENSORLG00000003851	ptcd2	100	73.333	ENSPNYG00000003122	ptcd2	100	73.333	Pundamilia_nyererei
ENSORLG00000003851	ptcd2	92	63.014	ENSPNAG00000021490	ptcd2	95	63.014	Pygocentrus_nattereri
ENSORLG00000003851	ptcd2	94	45.652	ENSRNOG00000028403	Ptcd2	97	45.652	Rattus_norvegicus
ENSORLG00000003851	ptcd2	92	42.857	ENSRBIG00000032929	PTCD2	93	42.857	Rhinopithecus_bieti
ENSORLG00000003851	ptcd2	92	46.703	ENSRROG00000000080	PTCD2	95	46.703	Rhinopithecus_roxellana
ENSORLG00000003851	ptcd2	88	46.705	ENSSBOG00000018911	PTCD2	90	46.705	Saimiri_boliviensis_boliviensis
ENSORLG00000003851	ptcd2	91	44.225	ENSSHAG00000003833	PTCD2	92	44.225	Sarcophilus_harrisii
ENSORLG00000003851	ptcd2	88	53.757	ENSSFOG00015015415	ptcd2	90	53.757	Scleropages_formosus
ENSORLG00000003851	ptcd2	91	64.306	ENSSMAG00000010350	ptcd2	92	64.306	Scophthalmus_maximus
ENSORLG00000003851	ptcd2	100	69.744	ENSSDUG00000008142	ptcd2	97	69.744	Seriola_dumerili
ENSORLG00000003851	ptcd2	98	69.713	ENSSLDG00000015284	ptcd2	100	69.713	Seriola_lalandi_dorsalis
ENSORLG00000003851	ptcd2	55	49.246	ENSSARG00000004983	PTCD2	67	49.761	Sorex_araneus
ENSORLG00000003851	ptcd2	91	44.011	ENSSPUG00000000176	PTCD2	90	44.011	Sphenodon_punctatus
ENSORLG00000003851	ptcd2	100	65.897	ENSSPAG00000008591	ptcd2	100	65.897	Stegastes_partitus
ENSORLG00000003851	ptcd2	92	45.109	ENSSSCG00000016975	PTCD2	87	45.109	Sus_scrofa
ENSORLG00000003851	ptcd2	88	44.186	ENSTGUG00000005705	PTCD2	99	44.186	Taeniopygia_guttata
ENSORLG00000003851	ptcd2	88	45.665	ENSTBEG00000016559	PTCD2	89	45.892	Tupaia_belangeri
ENSORLG00000003851	ptcd2	88	46.377	ENSTTRG00000011851	PTCD2	96	41.398	Tursiops_truncatus
ENSORLG00000003851	ptcd2	88	44.798	ENSUAMG00000007583	PTCD2	81	44.798	Ursus_americanus
ENSORLG00000003851	ptcd2	92	43.802	ENSUMAG00000007666	PTCD2	95	43.802	Ursus_maritimus
ENSORLG00000003851	ptcd2	89	44.828	ENSVPAG00000009597	PTCD2	89	44.828	Vicugna_pacos
ENSORLG00000003851	ptcd2	88	47.399	ENSVVUG00000007299	-	96	46.196	Vulpes_vulpes
ENSORLG00000003851	ptcd2	88	46.286	ENSXETG00000031652	PTCD2	91	46.286	Xenopus_tropicalis
ENSORLG00000003851	ptcd2	99	67.866	ENSXMAG00000005940	ptcd2	92	67.866	Xiphophorus_maculatus