EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000003902 (Gene tree)
Gene ID: 101171862
Gene Symbol: rab12
Alias: -
Full Name: RAB12%2C member RAS oncogene family
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 11472 bases
Position: chr17:4627991-4639462
Accession: 101171862
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000043110	MMR_HSR1	PF01926.23	6.7e-07	1	1
ENSORLP00000004873	MMR_HSR1	PF01926.23	7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000004874	-	762	-	ENSORLP00000004873	253 (aa)	-	H2LFY1
ENSORLT00000045508	-	3115	XM_023965346	ENSORLP00000043110	242 (aa)	XP_023821114	UPI0000EA03CE

Gene Model

Click here to download ENSORLG00000003902's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000003902's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000003902	rab12	66	40.252	ENSORLG00000016290	rab6bb	79	40.385
ENSORLG00000003902	rab12	73	43.316	ENSORLG00000010846	rab15	87	43.316
ENSORLG00000003902	rab12	79	33.673	ENSORLG00000004394	rab34a	61	36.585
ENSORLG00000003902	rab12	79	47.938	ENSORLG00000016555	rab3db	93	47.208
ENSORLG00000003902	rab12	84	44.828	ENSORLG00000021846	-	93	47.090
ENSORLG00000003902	rab12	64	31.210	ENSORLG00000018119	si:ch73-116o1.2	79	31.737
ENSORLG00000003902	rab12	83	37.000	ENSORLG00000026197	rab6a	76	40.625
ENSORLG00000003902	rab12	77	39.791	ENSORLG00000030642	zgc:101559	80	39.791
ENSORLG00000003902	rab12	71	37.791	ENSORLG00000003882	rab5c	77	37.791
ENSORLG00000003902	rab12	83	38.679	ENSORLG00000015284	-	60	41.209
ENSORLG00000003902	rab12	80	47.423	ENSORLG00000028104	rab1ab	84	50.000
ENSORLG00000003902	rab12	83	30.392	ENSORLG00000006405	rab9b	80	33.929
ENSORLG00000003902	rab12	66	35.625	ENSORLG00000025519	rras	91	33.889
ENSORLG00000003902	rab12	84	39.437	ENSORLG00000018331	RAB11A	95	39.713
ENSORLG00000003902	rab12	71	47.093	ENSORLG00000000602	zgc:171927	83	46.067
ENSORLG00000003902	rab12	66	32.335	ENSORLG00000001566	rhebl1	89	32.335
ENSORLG00000003902	rab12	84	38.426	ENSORLG00000013938	rab11bb	83	41.758
ENSORLG00000003902	rab12	80	37.000	ENSORLG00000029090	-	82	37.278
ENSORLG00000003902	rab12	73	42.373	ENSORLG00000024116	RAB15	83	43.353
ENSORLG00000003902	rab12	68	34.715	ENSORLG00000002071	-	77	34.715
ENSORLG00000003902	rab12	80	35.859	ENSORLG00000030566	rab33a	59	39.634
ENSORLG00000003902	rab12	70	42.135	ENSORLG00000008345	-	81	42.135
ENSORLG00000003902	rab12	62	31.788	ENSORLG00000024443	zgc:55558	87	31.707
ENSORLG00000003902	rab12	79	40.625	ENSORLG00000013432	rab2a	92	40.816
ENSORLG00000003902	rab12	81	37.799	ENSORLG00000030109	rab33ba	85	37.438
ENSORLG00000003902	rab12	68	35.714	ENSORLG00000025098	si:dkey-13a21.4	82	35.714
ENSORLG00000003902	rab12	66	39.623	ENSORLG00000027669	RAB41	75	38.994
ENSORLG00000003902	rab12	74	42.778	ENSORLG00000028885	rab35b	89	42.541
ENSORLG00000003902	rab12	65	36.250	ENSORLG00000003119	rab34b	58	35.625
ENSORLG00000003902	rab12	83	34.906	ENSORLG00000014099	si:dkey-34d22.5	72	40.881
ENSORLG00000003902	rab12	65	32.099	ENSORLG00000024102	kras	91	32.000
ENSORLG00000003902	rab12	83	32.843	ENSORLG00000006628	-	80	36.310
ENSORLG00000003902	rab12	86	36.792	ENSORLG00000007406	rab14	80	40.462
ENSORLG00000003902	rab12	81	34.171	ENSORLG00000001351	-	81	37.278
ENSORLG00000003902	rab12	84	37.500	ENSORLG00000015307	rab11ba	83	41.209
ENSORLG00000003902	rab12	72	37.363	ENSORLG00000000937	-	84	37.363
ENSORLG00000003902	rab12	84	36.893	ENSORLG00000016126	rab11al	78	42.012
ENSORLG00000003902	rab12	68	42.515	ENSORLG00000001850	RAB39B	81	41.011
ENSORLG00000003902	rab12	66	38.750	ENSORLG00000012261	rab5aa	77	37.500
ENSORLG00000003902	rab12	76	39.785	ENSORLG00000022335	rab42a	85	41.270
ENSORLG00000003902	rab12	69	33.533	ENSORLG00000009874	rabl2	72	33.533
ENSORLG00000003902	rab12	68	34.524	ENSORLG00000017806	rab9a	83	34.524
ENSORLG00000003902	rab12	72	41.379	ENSORLG00000001098	si:dkey-16l2.16	82	41.379
ENSORLG00000003902	rab12	67	47.561	ENSORLG00000004624	rab18a	81	47.024
ENSORLG00000003902	rab12	82	39.303	ENSORLG00000016135	rab25b	87	41.860
ENSORLG00000003902	rab12	77	32.990	ENSORLG00000010115	rab23	78	34.568
ENSORLG00000003902	rab12	69	31.737	ENSORLG00000003681	rheb	89	31.737
ENSORLG00000003902	rab12	71	50.000	ENSORLG00000025395	-	86	50.000
ENSORLG00000003902	rab12	84	38.350	ENSORLG00000012158	rab25a	95	38.350
ENSORLG00000003902	rab12	81	38.579	ENSORLG00000029921	-	80	41.040
ENSORLG00000003902	rab12	77	36.979	ENSORLG00000027892	RAB29	91	37.234
ENSORLG00000003902	rab12	71	47.093	ENSORLG00000029812	rab30	90	44.809
ENSORLG00000003902	rab12	67	30.588	ENSORLG00000025819	-	90	30.588
ENSORLG00000003902	rab12	67	47.561	ENSORLG00000009609	rab18b	81	47.024
ENSORLG00000003902	rab12	71	41.477	ENSORLG00000024558	-	76	39.130

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000003902	rab12	100	80.328	ENSG00000206418	RAB12	100	83.607	Homo_sapiens
ENSORLG00000003902	rab12	90	78.082	ENSAMEG00000007452	RAB12	94	81.735	Ailuropoda_melanoleuca
ENSORLG00000003902	rab12	100	96.721	ENSACIG00000020616	rab12	100	96.721	Amphilophus_citrinellus
ENSORLG00000003902	rab12	100	96.296	ENSAOCG00000002130	rab12	100	96.296	Amphiprion_ocellaris
ENSORLG00000003902	rab12	100	96.296	ENSAPEG00000013255	rab12	100	96.296	Amphiprion_percula
ENSORLG00000003902	rab12	100	96.694	ENSATEG00000019683	rab12	100	96.694	Anabas_testudineus
ENSORLG00000003902	rab12	90	84.932	ENSACAG00000003360	RAB12	86	87.892	Anolis_carolinensis
ENSORLG00000003902	rab12	100	97.942	ENSACLG00000007696	rab12	100	97.942	Astatotilapia_calliptera
ENSORLG00000003902	rab12	100	89.024	ENSAMXG00000004882	rab12	100	89.837	Astyanax_mexicanus
ENSORLG00000003902	rab12	93	84.444	ENSBTAG00000010356	RAB12	100	84.016	Bos_taurus
ENSORLG00000003902	rab12	93	84.956	ENSCJAG00000015468	RAB12	72	84.490	Callithrix_jacchus
ENSORLG00000003902	rab12	93	84.000	ENSCAFG00020023721	RAB12	84	83.607	Canis_lupus_dingo
ENSORLG00000003902	rab12	93	84.444	ENSCHIG00000016103	RAB12	100	84.016	Capra_hircus
ENSORLG00000003902	rab12	86	85.238	ENSCPOG00000022689	RAB12	100	89.524	Cavia_porcellus
ENSORLG00000003902	rab12	100	81.224	ENSCCAG00000022862	RAB12	100	84.490	Cebus_capucinus
ENSORLG00000003902	rab12	91	84.375	ENSCATG00000037784	RAB12	93	87.892	Cercocebus_atys
ENSORLG00000003902	rab12	84	88.780	ENSCSAG00000017569	RAB12	64	87.892	Chlorocebus_sabaeus
ENSORLG00000003902	rab12	93	83.628	ENSCPBG00000028375	RAB12	100	83.265	Chrysemys_picta_bellii
ENSORLG00000003902	rab12	90	84.475	ENSCANG00000031453	RAB12	99	88.128	Colobus_angolensis_palliatus
ENSORLG00000003902	rab12	93	84.071	ENSCGRG00001006958	Rab12	83	83.265	Cricetulus_griseus_chok1gshd
ENSORLG00000003902	rab12	100	96.296	ENSCSEG00000016933	rab12	100	96.296	Cynoglossus_semilaevis
ENSORLG00000003902	rab12	100	96.341	ENSCVAG00000003539	rab12	100	96.341	Cyprinodon_variegatus
ENSORLG00000003902	rab12	100	89.669	ENSDARG00000089428	rab12	94	94.545	Danio_rerio
ENSORLG00000003902	rab12	84	88.293	ENSDNOG00000046064	RAB12	51	87.444	Dasypus_novemcinctus
ENSORLG00000003902	rab12	93	83.260	ENSDORG00000008920	Rab12	98	87.892	Dipodomys_ordii
ENSORLG00000003902	rab12	78	66.138	ENSEBUG00000006581	rab12	89	67.582	Eptatretus_burgeri
ENSORLG00000003902	rab12	93	84.071	ENSEASG00005002926	RAB12	83	83.673	Equus_asinus_asinus
ENSORLG00000003902	rab12	93	84.071	ENSECAG00000007384	RAB12	71	83.673	Equus_caballus
ENSORLG00000003902	rab12	100	90.083	ENSELUG00000007123	rab12	100	88.430	Esox_lucius
ENSORLG00000003902	rab12	93	84.000	ENSFCAG00000027710	RAB12	72	83.607	Felis_catus
ENSORLG00000003902	rab12	100	96.327	ENSFHEG00000004319	rab12	100	96.327	Fundulus_heteroclitus
ENSORLG00000003902	rab12	86	92.308	ENSGMOG00000012335	rab12	87	90.909	Gadus_morhua
ENSORLG00000003902	rab12	93	83.772	ENSGALG00000033608	RAB12	89	87.892	Gallus_gallus
ENSORLG00000003902	rab12	90	93.548	ENSGACG00000016639	rab12	100	93.548	Gasterosteus_aculeatus
ENSORLG00000003902	rab12	93	83.186	ENSGAGG00000007278	RAB12	100	82.857	Gopherus_agassizii
ENSORLG00000003902	rab12	100	97.942	ENSHBUG00000008497	rab12	100	97.942	Haplochromis_burtoni
ENSORLG00000003902	rab12	95	81.034	ENSHGLG00000006189	RAB12	86	88.235	Heterocephalus_glaber_female
ENSORLG00000003902	rab12	100	90.947	ENSHCOG00000012376	rab12	100	90.535	Hippocampus_comes
ENSORLG00000003902	rab12	91	94.118	ENSIPUG00000017401	rab12	90	94.091	Ictalurus_punctatus
ENSORLG00000003902	rab12	94	81.304	ENSSTOG00000025122	RAB12	96	87.671	Ictidomys_tridecemlineatus
ENSORLG00000003902	rab12	91	84.375	ENSJJAG00000019064	Rab12	98	87.892	Jaculus_jaculus
ENSORLG00000003902	rab12	100	93.388	ENSKMAG00000020056	rab12	100	92.562	Kryptolebias_marmoratus
ENSORLG00000003902	rab12	100	96.281	ENSLBEG00000013756	rab12	100	96.281	Labrus_bergylta
ENSORLG00000003902	rab12	91	87.892	ENSLACG00000010461	RAB12	90	87.892	Latimeria_chalumnae
ENSORLG00000003902	rab12	100	82.661	ENSLOCG00000002680	rab12	100	86.694	Lepisosteus_oculatus
ENSORLG00000003902	rab12	100	80.488	ENSMFAG00000043551	RAB12	91	87.892	Macaca_fascicularis
ENSORLG00000003902	rab12	84	88.780	ENSMNEG00000040853	RAB12	88	87.892	Macaca_nemestrina
ENSORLG00000003902	rab12	100	96.694	ENSMAMG00000006862	rab12	100	96.694	Mastacembelus_armatus
ENSORLG00000003902	rab12	100	97.942	ENSMZEG00005024316	rab12	100	97.942	Maylandia_zebra
ENSORLG00000003902	rab12	83	84.804	ENSMGAG00000009197	RAB12	100	88.725	Meleagris_gallopavo
ENSORLG00000003902	rab12	93	84.071	ENSMAUG00000008371	Rab12	83	83.265	Mesocricetus_auratus
ENSORLG00000003902	rab12	91	83.929	ENSMICG00000030661	RAB12	93	87.444	Microcebus_murinus
ENSORLG00000003902	rab12	90	84.018	ENSMOCG00000000452	Rab12	100	87.671	Microtus_ochrogaster
ENSORLG00000003902	rab12	86	88.517	ENSMODG00000021452	RAB12	66	88.341	Monodelphis_domestica
ENSORLG00000003902	rab12	100	93.802	ENSMALG00000015762	rab12	100	93.802	Monopterus_albus
ENSORLG00000003902	rab12	93	85.841	MGP_CAROLIEiJ_G0021839	Rab12	84	84.898	Mus_caroli
ENSORLG00000003902	rab12	93	85.841	ENSMUSG00000023460	Rab12	100	84.898	Mus_musculus
ENSORLG00000003902	rab12	93	85.841	MGP_PahariEiJ_G0020826	Rab12	100	84.898	Mus_pahari
ENSORLG00000003902	rab12	93	85.841	MGP_SPRETEiJ_G0022750	Rab12	83	84.898	Mus_spretus
ENSORLG00000003902	rab12	100	80.408	ENSMLUG00000002883	RAB12	92	87.892	Myotis_lucifugus
ENSORLG00000003902	rab12	95	81.545	ENSNGAG00000024103	-	95	87.444	Nannospalax_galili
ENSORLG00000003902	rab12	91	77.232	ENSNGAG00000019722	-	91	77.130	Nannospalax_galili
ENSORLG00000003902	rab12	100	97.942	ENSNBRG00000014428	rab12	100	97.942	Neolamprologus_brichardi
ENSORLG00000003902	rab12	100	79.918	ENSNLEG00000006939	RAB12	100	83.197	Nomascus_leucogenys
ENSORLG00000003902	rab12	100	81.301	ENSMEUG00000000493	RAB12	91	88.341	Notamacropus_eugenii
ENSORLG00000003902	rab12	90	85.388	ENSODEG00000006414	RAB12	100	89.041	Octodon_degus
ENSORLG00000003902	rab12	100	97.531	ENSONIG00000018469	rab12	100	97.531	Oreochromis_niloticus
ENSORLG00000003902	rab12	100	99.587	ENSORLG00020005131	rab12	100	99.587	Oryzias_latipes_hni
ENSORLG00000003902	rab12	100	99.587	ENSORLG00015007869	rab12	100	99.587	Oryzias_latipes_hsok
ENSORLG00000003902	rab12	100	99.174	ENSOMEG00000008191	rab12	100	99.174	Oryzias_melastigma
ENSORLG00000003902	rab12	86	84.762	ENSOGAG00000028002	RAB12	99	88.571	Otolemur_garnettii
ENSORLG00000003902	rab12	79	89.529	ENSOARG00000000728	RAB12	88	87.442	Ovis_aries
ENSORLG00000003902	rab12	85	84.541	ENSPPAG00000009152	RAB12	97	88.835	Pan_paniscus
ENSORLG00000003902	rab12	100	80.328	ENSPPRG00000024521	RAB12	100	83.607	Panthera_pardus
ENSORLG00000003902	rab12	100	80.328	ENSPTRG00000009853	RAB12	100	83.607	Pan_troglodytes
ENSORLG00000003902	rab12	100	80.567	ENSPANG00000009320	RAB12	90	88.341	Papio_anubis
ENSORLG00000003902	rab12	100	88.477	ENSPKIG00000008579	rab12	100	88.889	Paramormyrops_kingsleyae
ENSORLG00000003902	rab12	100	90.909	ENSPMGG00000001890	rab12	100	90.909	Periophthalmus_magnuspinnatus
ENSORLG00000003902	rab12	93	84.513	ENSPEMG00000021032	Rab12	84	83.673	Peromyscus_maniculatus_bairdii
ENSORLG00000003902	rab12	93	85.022	ENSPCIG00000010453	RAB12	56	88.341	Phascolarctos_cinereus
ENSORLG00000003902	rab12	100	93.852	ENSPFOG00000001579	rab12	100	93.852	Poecilia_formosa
ENSORLG00000003902	rab12	100	93.852	ENSPLAG00000013594	rab12	100	93.852	Poecilia_latipinna
ENSORLG00000003902	rab12	100	93.852	ENSPMEG00000010417	rab12	100	93.852	Poecilia_mexicana
ENSORLG00000003902	rab12	100	93.852	ENSPREG00000017487	rab12	100	94.262	Poecilia_reticulata
ENSORLG00000003902	rab12	93	84.000	ENSPPYG00000009015	-	72	83.607	Pongo_abelii
ENSORLG00000003902	rab12	100	79.918	ENSPCAG00000015007	RAB12	100	83.197	Procavia_capensis
ENSORLG00000003902	rab12	100	80.328	ENSPCOG00000019816	RAB12	100	83.607	Propithecus_coquereli
ENSORLG00000003902	rab12	100	79.918	ENSPVAG00000002757	RAB12	100	83.197	Pteropus_vampyrus
ENSORLG00000003902	rab12	100	97.942	ENSPNYG00000023905	rab12	100	97.942	Pundamilia_nyererei
ENSORLG00000003902	rab12	100	97.942	ENSPNYG00000005654	rab12	100	97.942	Pundamilia_nyererei
ENSORLG00000003902	rab12	100	88.211	ENSPNAG00000015031	rab12	100	89.024	Pygocentrus_nattereri
ENSORLG00000003902	rab12	93	82.819	ENSRNOG00000019295	Rab12	91	82.379	Rattus_norvegicus
ENSORLG00000003902	rab12	91	84.375	ENSRBIG00000028760	RAB12	96	87.892	Rhinopithecus_bieti
ENSORLG00000003902	rab12	91	84.375	ENSRROG00000019249	RAB12	93	87.892	Rhinopithecus_roxellana
ENSORLG00000003902	rab12	95	79.654	ENSSBOG00000021125	RAB12	80	88.517	Saimiri_boliviensis_boliviensis
ENSORLG00000003902	rab12	93	84.513	ENSSHAG00000001489	RAB12	90	88.670	Sarcophilus_harrisii
ENSORLG00000003902	rab12	100	95.455	ENSSMAG00000012678	rab12	100	95.455	Scophthalmus_maximus
ENSORLG00000003902	rab12	100	97.521	ENSSDUG00000008505	rab12	100	97.521	Seriola_dumerili
ENSORLG00000003902	rab12	100	97.521	ENSSLDG00000022239	rab12	100	97.521	Seriola_lalandi_dorsalis
ENSORLG00000003902	rab12	97	83.966	ENSSPUG00000003222	RAB12	91	88.789	Sphenodon_punctatus
ENSORLG00000003902	rab12	100	96.708	ENSSPAG00000010822	rab12	100	96.708	Stegastes_partitus
ENSORLG00000003902	rab12	93	84.000	ENSSSCG00000038026	RAB12	100	84.016	Sus_scrofa
ENSORLG00000003902	rab12	86	88.517	ENSTGUG00000009889	RAB12	89	88.341	Taeniopygia_guttata
ENSORLG00000003902	rab12	100	93.388	ENSTRUG00000024455	rab12	100	93.388	Takifugu_rubripes
ENSORLG00000003902	rab12	100	94.215	ENSTNIG00000014859	rab12	100	94.215	Tetraodon_nigroviridis
ENSORLG00000003902	rab12	90	84.475	ENSTTRG00000008711	RAB12	99	88.128	Tursiops_truncatus
ENSORLG00000003902	rab12	100	80.328	ENSUAMG00000018092	RAB12	100	83.607	Ursus_americanus
ENSORLG00000003902	rab12	90	83.710	ENSVVUG00000011748	RAB12	99	87.330	Vulpes_vulpes
ENSORLG00000003902	rab12	87	89.151	ENSXETG00000004289	rab12	72	89.286	Xenopus_tropicalis
ENSORLG00000003902	rab12	100	92.623	ENSXCOG00000019310	rab12	100	93.033	Xiphophorus_couchianus
ENSORLG00000003902	rab12	100	93.033	ENSXMAG00000023617	rab12	100	93.443	Xiphophorus_maculatus