EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000003955 (Gene tree)
Gene ID: 101162023
Gene Symbol: -
Alias: -
Full Name: transcription activator BRG1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 19701 bases
Position: chr1:10481397-10501097
Accession: 101162023
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000004948	ResIII	PF04851.15	1.5e-08	1	1
ENSORLP00000028259	ResIII	PF04851.15	2e-08	1	1
ENSORLP00000028259	BRK	PF07533.16	6.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000036279	-	7324	XM_020702324	ENSORLP00000028259	1660 (aa)	XP_020557983	UPI000CE28CFB
ENSORLT00000004949	-	4107	-	ENSORLP00000004948	1368 (aa)	-	H2LG55

Gene Model

Click here to download ENSORLG00000003955's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000003955's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000003955	-	98	71.828	ENSORLG00000020820	SMARCA2	95	72.352
ENSORLG00000003955	-	95	82.965	ENSORLG00000015452	smarca4a	95	84.015

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000003955	-	97	87.446	ENSG00000127616	SMARCA4	99	95.652	Homo_sapiens
ENSORLG00000003955	-	76	86.134	ENSAPOG00000003509	smarca4a	98	86.943	Acanthochromis_polyacanthus
ENSORLG00000003955	-	99	91.020	ENSAPOG00000004542	SMARCA4	95	94.041	Acanthochromis_polyacanthus
ENSORLG00000003955	-	97	82.281	ENSAMEG00000010868	SMARCA4	95	79.577	Ailuropoda_melanoleuca
ENSORLG00000003955	-	98	82.018	ENSACIG00000021550	smarca4a	95	85.164	Amphilophus_citrinellus
ENSORLG00000003955	-	98	91.217	ENSACIG00000003035	-	87	93.727	Amphilophus_citrinellus
ENSORLG00000003955	-	98	87.153	ENSAOCG00000009450	-	87	96.724	Amphiprion_ocellaris
ENSORLG00000003955	-	94	83.929	ENSAOCG00000019167	smarca4a	96	83.878	Amphiprion_ocellaris
ENSORLG00000003955	-	100	93.409	ENSAPEG00000023108	-	97	93.738	Amphiprion_percula
ENSORLG00000003955	-	94	84.003	ENSAPEG00000015559	smarca4a	96	83.952	Amphiprion_percula
ENSORLG00000003955	-	91	91.156	ENSATEG00000011524	smarca4a	95	84.635	Anabas_testudineus
ENSORLG00000003955	-	99	93.411	ENSATEG00000001094	-	94	93.624	Anabas_testudineus
ENSORLG00000003955	-	98	86.930	ENSANAG00000036991	SMARCA4	95	80.363	Aotus_nancymaae
ENSORLG00000003955	-	99	83.407	ENSACLG00000000163	smarca4a	93	85.331	Astatotilapia_calliptera
ENSORLG00000003955	-	98	91.361	ENSACLG00000008638	-	95	94.397	Astatotilapia_calliptera
ENSORLG00000003955	-	98	84.643	ENSAMXG00000021023	smarca4a	97	85.510	Astyanax_mexicanus
ENSORLG00000003955	-	99	87.028	ENSAMXG00000011238	-	96	87.221	Astyanax_mexicanus
ENSORLG00000003955	-	96	87.339	ENSBTAG00000019220	SMARCA4	95	83.670	Bos_taurus
ENSORLG00000003955	-	97	86.660	ENSCJAG00000005936	SMARCA4	95	79.722	Callithrix_jacchus
ENSORLG00000003955	-	97	87.619	ENSCAFG00000017584	SMARCA4	95	83.553	Canis_familiaris
ENSORLG00000003955	-	98	87.252	ENSCAFG00020024620	SMARCA4	94	83.543	Canis_lupus_dingo
ENSORLG00000003955	-	96	82.029	ENSCHIG00000015318	SMARCA4	95	79.912	Capra_hircus
ENSORLG00000003955	-	98	87.080	ENSTSYG00000012966	SMARCA4	95	83.743	Carlito_syrichta
ENSORLG00000003955	-	98	80.216	ENSCAPG00000015932	SMARCA4	89	89.870	Cavia_aperea
ENSORLG00000003955	-	98	87.252	ENSCPOG00000015549	SMARCA4	95	83.668	Cavia_porcellus
ENSORLG00000003955	-	99	80.202	ENSCCAG00000031660	SMARCA4	94	80.562	Cebus_capucinus
ENSORLG00000003955	-	97	87.446	ENSCATG00000029530	SMARCA4	95	83.543	Cercocebus_atys
ENSORLG00000003955	-	99	83.683	ENSCLAG00000011946	SMARCA4	95	83.869	Chinchilla_lanigera
ENSORLG00000003955	-	99	82.300	ENSCPBG00000009994	SMARCA4	95	83.532	Chrysemys_picta_bellii
ENSORLG00000003955	-	97	87.446	ENSCANG00000036013	SMARCA4	95	83.543	Colobus_angolensis_palliatus
ENSORLG00000003955	-	97	87.532	ENSCGRG00001016732	Smarca4	95	83.543	Cricetulus_griseus_chok1gshd
ENSORLG00000003955	-	98	87.166	ENSCGRG00000017242	Smarca4	95	83.543	Cricetulus_griseus_crigri
ENSORLG00000003955	-	95	81.130	ENSCSEG00000014771	smarca4a	95	84.247	Cynoglossus_semilaevis
ENSORLG00000003955	-	95	83.670	ENSCVAG00000006979	smarca4a	96	83.942	Cyprinodon_variegatus
ENSORLG00000003955	-	99	87.606	ENSCVAG00000003018	-	89	93.209	Cyprinodon_variegatus
ENSORLG00000003955	-	93	83.237	ENSDARG00000104339	SMARCA4	94	84.726	Danio_rerio
ENSORLG00000003955	-	97	85.119	ENSDARG00000077226	smarca4a	95	85.262	Danio_rerio
ENSORLG00000003955	-	97	80.048	ENSDNOG00000048847	SMARCA4	90	90.141	Dasypus_novemcinctus
ENSORLG00000003955	-	92	83.287	ENSDORG00000002544	Smarca4	87	79.010	Dipodomys_ordii
ENSORLG00000003955	-	98	72.444	ENSETEG00000013361	SMARCA4	90	71.855	Echinops_telfairi
ENSORLG00000003955	-	96	90.296	ENSEASG00005006167	SMARCA4	95	81.623	Equus_asinus_asinus
ENSORLG00000003955	-	98	87.080	ENSECAG00000008334	SMARCA4	95	83.480	Equus_caballus
ENSORLG00000003955	-	99	82.952	ENSELUG00000010247	smarca4a	95	83.032	Esox_lucius
ENSORLG00000003955	-	99	80.850	ENSELUG00000023232	-	94	85.512	Esox_lucius
ENSORLG00000003955	-	98	87.113	ENSFCAG00000004894	SMARCA4	95	83.511	Felis_catus
ENSORLG00000003955	-	92	81.336	ENSFALG00000004208	SMARCA4	92	81.806	Ficedula_albicollis
ENSORLG00000003955	-	98	86.844	ENSFDAG00000012237	SMARCA4	93	84.089	Fukomys_damarensis
ENSORLG00000003955	-	100	93.545	ENSFHEG00000007902	-	97	93.572	Fundulus_heteroclitus
ENSORLG00000003955	-	95	82.875	ENSFHEG00000010182	smarca4a	95	83.427	Fundulus_heteroclitus
ENSORLG00000003955	-	90	84.220	ENSGMOG00000005756	-	90	83.605	Gadus_morhua
ENSORLG00000003955	-	87	79.817	ENSGMOG00000002649	smarca4a	84	80.655	Gadus_morhua
ENSORLG00000003955	-	79	86.996	ENSGALG00000047145	SMARCA4	95	81.617	Gallus_gallus
ENSORLG00000003955	-	87	87.052	ENSGAFG00000014900	smarca4a	96	87.474	Gambusia_affinis
ENSORLG00000003955	-	98	90.109	ENSGAFG00000008827	-	98	85.144	Gambusia_affinis
ENSORLG00000003955	-	99	85.614	ENSGACG00000016033	-	97	85.498	Gasterosteus_aculeatus
ENSORLG00000003955	-	95	83.796	ENSGACG00000006691	smarca4a	95	83.344	Gasterosteus_aculeatus
ENSORLG00000003955	-	99	82.448	ENSGAGG00000016757	SMARCA4	95	83.690	Gopherus_agassizii
ENSORLG00000003955	-	98	87.080	ENSGGOG00000009882	SMARCA4	95	83.543	Gorilla_gorilla
ENSORLG00000003955	-	99	83.470	ENSHBUG00000021172	smarca4a	95	84.950	Haplochromis_burtoni
ENSORLG00000003955	-	100	94.765	ENSHBUG00000005447	-	97	94.960	Haplochromis_burtoni
ENSORLG00000003955	-	97	87.306	ENSHGLG00000010519	SMARCA4	95	83.250	Heterocephalus_glaber_female
ENSORLG00000003955	-	98	86.180	ENSHGLG00100013774	SMARCA4	95	83.124	Heterocephalus_glaber_male
ENSORLG00000003955	-	91	84.757	ENSHCOG00000009510	smarca4a	93	84.600	Hippocampus_comes
ENSORLG00000003955	-	99	85.018	ENSIPUG00000006107	smarca4a	95	85.506	Ictalurus_punctatus
ENSORLG00000003955	-	97	85.258	ENSIPUG00000016346	-	88	90.583	Ictalurus_punctatus
ENSORLG00000003955	-	98	87.166	ENSSTOG00000007939	SMARCA4	95	83.543	Ictidomys_tridecemlineatus
ENSORLG00000003955	-	97	85.017	ENSJJAG00000012877	Smarca4	95	81.365	Jaculus_jaculus
ENSORLG00000003955	-	97	93.519	ENSKMAG00000019518	-	97	93.449	Kryptolebias_marmoratus
ENSORLG00000003955	-	95	83.101	ENSKMAG00000011931	smarca4a	95	84.204	Kryptolebias_marmoratus
ENSORLG00000003955	-	94	93.293	ENSLBEG00000020655	-	94	87.714	Labrus_bergylta
ENSORLG00000003955	-	95	81.692	ENSLBEG00000017383	smarca4a	94	80.809	Labrus_bergylta
ENSORLG00000003955	-	53	75.788	ENSLACG00000015309	SMARCA4	94	82.776	Latimeria_chalumnae
ENSORLG00000003955	-	99	80.912	ENSLOCG00000007820	smarca4a	88	84.702	Lepisosteus_oculatus
ENSORLG00000003955	-	97	87.392	ENSLAFG00000001433	SMARCA4	95	83.448	Loxodonta_africana
ENSORLG00000003955	-	97	87.446	ENSMFAG00000032146	SMARCA4	94	83.543	Macaca_fascicularis
ENSORLG00000003955	-	97	87.446	ENSMMUG00000012042	SMARCA4	97	90.094	Macaca_mulatta
ENSORLG00000003955	-	98	87.080	ENSMNEG00000028512	SMARCA4	95	83.522	Macaca_nemestrina
ENSORLG00000003955	-	98	87.080	ENSMLEG00000034976	SMARCA4	95	83.323	Mandrillus_leucophaeus
ENSORLG00000003955	-	96	87.893	ENSMAMG00000009256	smarca4a	97	89.477	Mastacembelus_armatus
ENSORLG00000003955	-	100	93.317	ENSMAMG00000002841	-	97	93.584	Mastacembelus_armatus
ENSORLG00000003955	-	95	94.997	ENSMZEG00005023861	-	95	95.210	Maylandia_zebra
ENSORLG00000003955	-	99	83.470	ENSMZEG00005003889	smarca4a	95	84.950	Maylandia_zebra
ENSORLG00000003955	-	98	86.942	ENSMAUG00000020731	Smarca4	95	83.448	Mesocricetus_auratus
ENSORLG00000003955	-	97	87.392	ENSMICG00000009806	SMARCA4	95	83.511	Microcebus_murinus
ENSORLG00000003955	-	97	87.219	ENSMOCG00000022209	Smarca4	95	83.386	Microtus_ochrogaster
ENSORLG00000003955	-	98	93.068	ENSMMOG00000008466	-	97	89.375	Mola_mola
ENSORLG00000003955	-	94	79.056	ENSMMOG00000007571	smarca4a	94	83.727	Mola_mola
ENSORLG00000003955	-	97	85.582	ENSMODG00000006287	SMARCA4	95	81.874	Monodelphis_domestica
ENSORLG00000003955	-	98	80.751	ENSMALG00000003388	smarca4a	95	84.465	Monopterus_albus
ENSORLG00000003955	-	99	90.367	ENSMALG00000021534	-	96	91.018	Monopterus_albus
ENSORLG00000003955	-	97	87.532	MGP_CAROLIEiJ_G0031879	Smarca4	100	86.074	Mus_caroli
ENSORLG00000003955	-	97	87.532	ENSMUSG00000032187	Smarca4	99	86.074	Mus_musculus
ENSORLG00000003955	-	99	83.683	MGP_PahariEiJ_G0014745	Smarca4	100	86.245	Mus_pahari
ENSORLG00000003955	-	97	87.532	MGP_SPRETEiJ_G0033003	Smarca4	100	86.074	Mus_spretus
ENSORLG00000003955	-	97	87.532	ENSMPUG00000005711	SMARCA4	95	83.543	Mustela_putorius_furo
ENSORLG00000003955	-	97	87.339	ENSMLUG00000004491	-	95	83.731	Myotis_lucifugus
ENSORLG00000003955	-	99	83.293	ENSNGAG00000021852	Smarca4	95	83.386	Nannospalax_galili
ENSORLG00000003955	-	99	91.894	ENSNBRG00000018865	-	96	92.158	Neolamprologus_brichardi
ENSORLG00000003955	-	94	84.226	ENSNBRG00000011457	smarca4a	93	82.361	Neolamprologus_brichardi
ENSORLG00000003955	-	97	86.049	ENSNLEG00000012389	SMARCA4	91	80.536	Nomascus_leucogenys
ENSORLG00000003955	-	87	93.103	ENSOPRG00000000885	-	76	93.103	Ochotona_princeps
ENSORLG00000003955	-	99	82.140	ENSODEG00000017127	SMARCA4	95	81.032	Octodon_degus
ENSORLG00000003955	-	95	84.586	ENSONIG00000008196	smarca4a	95	84.950	Oreochromis_niloticus
ENSORLG00000003955	-	99	94.883	ENSONIG00000018040	-	97	95.143	Oreochromis_niloticus
ENSORLG00000003955	-	99	77.540	ENSOCUG00000001787	SMARCA4	94	77.799	Oryctolagus_cuniculus
ENSORLG00000003955	-	100	99.759	ENSORLG00020009728	-	100	99.759	Oryzias_latipes_hni
ENSORLG00000003955	-	98	79.849	ENSORLG00020004611	smarca4a	98	84.553	Oryzias_latipes_hni
ENSORLG00000003955	-	100	99.277	ENSORLG00015007739	-	100	99.277	Oryzias_latipes_hsok
ENSORLG00000003955	-	95	82.776	ENSORLG00015016560	smarca4a	95	83.889	Oryzias_latipes_hsok
ENSORLG00000003955	-	100	98.616	ENSOMEG00000016626	-	100	98.616	Oryzias_melastigma
ENSORLG00000003955	-	98	81.624	ENSOMEG00000007486	smarca4a	95	84.111	Oryzias_melastigma
ENSORLG00000003955	-	97	85.727	ENSOGAG00000016148	SMARCA4	100	77.961	Otolemur_garnettii
ENSORLG00000003955	-	98	87.263	ENSOARG00000017454	SMARCA4	94	84.015	Ovis_aries
ENSORLG00000003955	-	97	87.446	ENSPPAG00000043191	SMARCA4	95	83.543	Pan_paniscus
ENSORLG00000003955	-	98	87.113	ENSPPRG00000000064	SMARCA4	95	83.511	Panthera_pardus
ENSORLG00000003955	-	93	85.327	ENSPTIG00000017447	SMARCA4	95	78.017	Panthera_tigris_altaica
ENSORLG00000003955	-	97	87.446	ENSPTRG00000010488	SMARCA4	95	83.543	Pan_troglodytes
ENSORLG00000003955	-	97	87.446	ENSPANG00000011042	SMARCA4	94	83.648	Papio_anubis
ENSORLG00000003955	-	95	86.355	ENSPKIG00000007770	SMARCA4	95	86.157	Paramormyrops_kingsleyae
ENSORLG00000003955	-	96	85.134	ENSPKIG00000010087	-	96	85.932	Paramormyrops_kingsleyae
ENSORLG00000003955	-	99	77.550	ENSPSIG00000005547	SMARCA4	95	78.462	Pelodiscus_sinensis
ENSORLG00000003955	-	97	87.306	ENSPEMG00000020389	Smarca4	95	83.448	Peromyscus_maniculatus_bairdii
ENSORLG00000003955	-	97	87.955	ENSPCIG00000017138	SMARCA4	95	83.962	Phascolarctos_cinereus
ENSORLG00000003955	-	96	82.149	ENSPFOG00000007892	smarca4a	95	82.522	Poecilia_formosa
ENSORLG00000003955	-	100	92.891	ENSPFOG00000012930	-	97	92.959	Poecilia_formosa
ENSORLG00000003955	-	96	82.397	ENSPLAG00000014294	smarca4a	95	82.647	Poecilia_latipinna
ENSORLG00000003955	-	99	90.128	ENSPLAG00000018616	-	89	95.010	Poecilia_latipinna
ENSORLG00000003955	-	92	83.355	ENSPMEG00000003725	smarca4a	93	83.247	Poecilia_mexicana
ENSORLG00000003955	-	95	93.620	ENSPMEG00000008929	-	93	93.455	Poecilia_mexicana
ENSORLG00000003955	-	95	93.459	ENSPREG00000014823	-	93	93.420	Poecilia_reticulata
ENSORLG00000003955	-	98	78.651	ENSPREG00000014608	smarca4a	96	82.984	Poecilia_reticulata
ENSORLG00000003955	-	97	84.673	ENSPPYG00000009568	SMARCA4	95	81.354	Pongo_abelii
ENSORLG00000003955	-	80	80.795	ENSPCAG00000014054	SMARCA4	73	80.795	Procavia_capensis
ENSORLG00000003955	-	98	87.252	ENSPCOG00000023011	SMARCA4	95	83.386	Propithecus_coquereli
ENSORLG00000003955	-	95	74.188	ENSPVAG00000007787	SMARCA4	91	73.463	Pteropus_vampyrus
ENSORLG00000003955	-	98	91.517	ENSPNYG00000023995	-	95	93.506	Pundamilia_nyererei
ENSORLG00000003955	-	99	81.479	ENSPNYG00000000717	smarca4a	93	85.331	Pundamilia_nyererei
ENSORLG00000003955	-	99	87.231	ENSPNAG00000006636	-	93	88.008	Pygocentrus_nattereri
ENSORLG00000003955	-	93	89.709	ENSPNAG00000024136	smarca4a	94	81.025	Pygocentrus_nattereri
ENSORLG00000003955	-	97	87.532	ENSRNOG00000009271	Smarca4	95	83.606	Rattus_norvegicus
ENSORLG00000003955	-	98	87.080	ENSRBIG00000038696	SMARCA4	94	83.543	Rhinopithecus_bieti
ENSORLG00000003955	-	97	87.446	ENSRROG00000045509	SMARCA4	95	83.606	Rhinopithecus_roxellana
ENSORLG00000003955	-	98	87.080	ENSSBOG00000026896	SMARCA4	95	83.480	Saimiri_boliviensis_boliviensis
ENSORLG00000003955	-	97	87.868	ENSSHAG00000001642	SMARCA4	95	83.836	Sarcophilus_harrisii
ENSORLG00000003955	-	95	81.433	ENSSFOG00015009921	-	88	90.998	Scleropages_formosus
ENSORLG00000003955	-	99	86.140	ENSSFOG00015013823	smarca4	95	85.480	Scleropages_formosus
ENSORLG00000003955	-	100	90.675	ENSSMAG00000014082	-	97	91.286	Scophthalmus_maximus
ENSORLG00000003955	-	98	82.103	ENSSMAG00000003200	smarca4a	95	83.458	Scophthalmus_maximus
ENSORLG00000003955	-	99	93.301	ENSSDUG00000005388	-	95	94.152	Seriola_dumerili
ENSORLG00000003955	-	99	79.585	ENSSDUG00000017298	smarca4a	95	78.871	Seriola_dumerili
ENSORLG00000003955	-	98	87.953	ENSSLDG00000023663	-	86	97.200	Seriola_lalandi_dorsalis
ENSORLG00000003955	-	95	84.220	ENSSLDG00000024486	smarca4a	96	84.009	Seriola_lalandi_dorsalis
ENSORLG00000003955	-	61	96.894	ENSSARG00000013477	SMARCA4	82	96.894	Sorex_araneus
ENSORLG00000003955	-	95	80.663	ENSSPUG00000004558	SMARCA4	94	80.443	Sphenodon_punctatus
ENSORLG00000003955	-	100	93.120	ENSSPAG00000012533	-	97	93.562	Stegastes_partitus
ENSORLG00000003955	-	95	83.845	ENSSPAG00000004248	smarca4a	95	84.135	Stegastes_partitus
ENSORLG00000003955	-	97	87.478	ENSSSCG00000013629	SMARCA4	95	83.511	Sus_scrofa
ENSORLG00000003955	-	59	79.599	ENSTGUG00000015488	-	98	84.248	Taeniopygia_guttata
ENSORLG00000003955	-	95	91.197	ENSTRUG00000001378	SMARCA4	94	91.470	Takifugu_rubripes
ENSORLG00000003955	-	96	79.639	ENSTRUG00000004885	smarca4a	100	79.400	Takifugu_rubripes
ENSORLG00000003955	-	76	83.265	ENSTNIG00000004859	-	96	87.008	Tetraodon_nigroviridis
ENSORLG00000003955	-	99	89.202	ENSTNIG00000004536	SMARCA4	97	89.392	Tetraodon_nigroviridis
ENSORLG00000003955	-	98	83.417	ENSTTRG00000009519	SMARCA4	95	80.099	Tursiops_truncatus
ENSORLG00000003955	-	97	87.619	ENSUAMG00000014661	SMARCA4	95	83.606	Ursus_americanus
ENSORLG00000003955	-	94	89.156	ENSUMAG00000022005	SMARCA4	98	90.205	Ursus_maritimus
ENSORLG00000003955	-	98	87.252	ENSVVUG00000017820	SMARCA4	92	83.543	Vulpes_vulpes
ENSORLG00000003955	-	99	78.869	ENSXETG00000009355	smarca4	89	84.022	Xenopus_tropicalis
ENSORLG00000003955	-	98	89.193	ENSXCOG00000013494	-	96	91.389	Xiphophorus_couchianus
ENSORLG00000003955	-	96	82.167	ENSXMAG00000006321	smarca4a	96	82.040	Xiphophorus_maculatus
ENSORLG00000003955	-	100	93.574	ENSXMAG00000007030	-	97	93.851	Xiphophorus_maculatus