EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSORLG00000004041 (Gene tree)
Gene ID
101166453
Gene Symbol
lig4
Alias
-
Full Name
DNA ligase 4
Gene Type
protein_coding
Species
Oryzias_latipes
Status
putative
Strand
Plus strand
Length
21911 bases
Position
chr2:17073626-17095536
Accession
101166453
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00000005052RNA_ligasePF09414.106.1e-0911
ENSORLP00000029095RNA_ligasePF09414.106.1e-0911
ENSORLP00000037330RNA_ligasePF09414.106.1e-0911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00000036386-3985XM_004066567ENSORLP00000029095912 (aa)XP_004066615UPI0000E9D0F6
ENSORLT00000005053-3950-ENSORLP00000005052912 (aa)-H2LGF6
ENSORLT00000026837-4015-ENSORLP00000037330912 (aa)-UPI0000E9D0F6
Gene Model
Click here to download ENSORLG00000004041's gene model file
Pathways
Pathway IDPathway NameSource
ola03450Non-homologous end-joiningKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000004041's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00000004041lig49964.835ENSG00000174405LIG410065.485Homo_sapiens
ENSORLG00000004041lig49985.714ENSAPOG00000000866lig49985.714Acanthochromis_polyacanthus
ENSORLG00000004041lig49963.129ENSAMEG00000019685LIG49963.129Ailuropoda_melanoleuca
ENSORLG00000004041lig49985.401ENSACIG00000018309lig49985.401Amphilophus_citrinellus
ENSORLG00000004041lig49985.495ENSAOCG00000011768lig49985.495Amphiprion_ocellaris
ENSORLG00000004041lig49985.714ENSAPEG00000017815lig49985.714Amphiprion_percula
ENSORLG00000004041lig49984.488ENSATEG00000005583lig49984.268Anabas_testudineus
ENSORLG00000004041lig49666.856ENSAPLG00000001673LIG49966.629Anas_platyrhynchos
ENSORLG00000004041lig49966.520ENSACAG00000014566LIG49966.520Anolis_carolinensis
ENSORLG00000004041lig49964.286ENSANAG00000012446LIG49964.066Aotus_nancymaae
ENSORLG00000004041lig49985.291ENSACLG00000027051lig49985.291Astatotilapia_calliptera
ENSORLG00000004041lig49977.692ENSAMXG00000008192lig49477.692Astyanax_mexicanus
ENSORLG00000004041lig49964.835ENSBTAG00000015868LIG49964.835Bos_taurus
ENSORLG00000004041lig49963.846ENSCJAG00000014689LIG49963.626Callithrix_jacchus
ENSORLG00000004041lig49963.767ENSCAFG00000006031LIG49964.097Canis_familiaris
ENSORLG00000004041lig49963.767ENSCAFG00020021230LIG49964.097Canis_lupus_dingo
ENSORLG00000004041lig49964.615ENSCHIG00000001019LIG49964.615Capra_hircus
ENSORLG00000004041lig49864.420ENSCAPG00000006284LIG49964.309Cavia_aperea
ENSORLG00000004041lig49964.066ENSCPOG00000014266LIG49963.956Cavia_porcellus
ENSORLG00000004041lig49964.066ENSCCAG00000019971LIG49963.956Cebus_capucinus
ENSORLG00000004041lig49964.349ENSCATG00000021075LIG49964.349Cercocebus_atys
ENSORLG00000004041lig49964.693ENSCLAG00000003376LIG49964.583Chinchilla_lanigera
ENSORLG00000004041lig49964.066ENSCSAG00000000211LIG49964.066Chlorocebus_sabaeus
ENSORLG00000004041lig49968.322ENSCPBG00000023291LIG410067.756Chrysemys_picta_bellii
ENSORLG00000004041lig46948.594ENSCING00000009536-9449.111Ciona_intestinalis
ENSORLG00000004041lig48345.872ENSCSAVG00000010336-9845.347Ciona_savignyi
ENSORLG00000004041lig49964.066ENSCANG00000005805LIG49964.066Colobus_angolensis_palliatus
ENSORLG00000004041lig49963.308ENSCGRG00001012072Lig49963.198Cricetulus_griseus_chok1gshd
ENSORLG00000004041lig49963.308ENSCGRG00000013417Lig49963.198Cricetulus_griseus_crigri
ENSORLG00000004041lig49782.227ENSCSEG00000013905lig49682.115Cynoglossus_semilaevis
ENSORLG00000004041lig49984.835ENSCVAG00000007896lig49984.835Cyprinodon_variegatus
ENSORLG00000004041lig49977.278ENSDARG00000060620lig49977.058Danio_rerio
ENSORLG00000004041lig49963.557ENSDNOG00000000513LIG49963.666Dasypus_novemcinctus
ENSORLG00000004041lig49964.680ENSDORG00000027303Lig49964.680Dipodomys_ordii
ENSORLG00000004041lig49230.968FBgn0030506Lig49330.631Drosophila_melanogaster
ENSORLG00000004041lig49862.680ENSETEG00000015563LIG410062.680Echinops_telfairi
ENSORLG00000004041lig49944.699ENSEBUG00000014243lig49944.699Eptatretus_burgeri
ENSORLG00000004041lig49963.626ENSEASG00005022073LIG49963.626Equus_asinus_asinus
ENSORLG00000004041lig49963.626ENSECAG00000003257LIG49963.626Equus_caballus
ENSORLG00000004041lig49980.244ENSELUG00000006787lig49980.244Esox_lucius
ENSORLG00000004041lig49963.656ENSFCAG00000031985LIG49963.656Felis_catus
ENSORLG00000004041lig48868.649ENSFALG00000004214LIG49868.401Ficedula_albicollis
ENSORLG00000004041lig49963.297ENSFDAG00000008973LIG49963.077Fukomys_damarensis
ENSORLG00000004041lig49984.228ENSFHEG00000007398lig49084.228Fundulus_heteroclitus
ENSORLG00000004041lig48577.249ENSGMOG00000012843lig49977.249Gadus_morhua
ENSORLG00000004041lig410065.284ENSGALG00000016854LIG410065.284Gallus_gallus
ENSORLG00000004041lig49883.760ENSGAFG00000019779lig49683.097Gambusia_affinis
ENSORLG00000004041lig49981.958ENSGACG00000014135lig49981.958Gasterosteus_aculeatus
ENSORLG00000004041lig49964.615ENSGGOG00000027771LIG49964.615Gorilla_gorilla
ENSORLG00000004041lig49985.291ENSHBUG00000006245lig49985.291Haplochromis_burtoni
ENSORLG00000004041lig49963.956ENSHGLG00000000718LIG49963.736Heterocephalus_glaber_female
ENSORLG00000004041lig49963.956ENSHGLG00100003265LIG49963.736Heterocephalus_glaber_male
ENSORLG00000004041lig49979.628ENSHCOG00000012010lig49979.628Hippocampus_comes
ENSORLG00000004041lig410075.904ENSIPUG00000013748lig410075.904Ictalurus_punctatus
ENSORLG00000004041lig49965.132ENSSTOG00000024303LIG49965.132Ictidomys_tridecemlineatus
ENSORLG00000004041lig49963.706ENSJJAG00000006750Lig49963.816Jaculus_jaculus
ENSORLG00000004041lig49981.559ENSKMAG00000001149lig49981.559Kryptolebias_marmoratus
ENSORLG00000004041lig49184.337ENSLBEG00000014578lig410084.337Labrus_bergylta
ENSORLG00000004041lig49967.689ENSLACG00000003282LIG49967.689Latimeria_chalumnae
ENSORLG00000004041lig49971.382ENSLOCG00000008901lig49871.053Lepisosteus_oculatus
ENSORLG00000004041lig49963.268ENSLAFG00000031152LIG49963.268Loxodonta_africana
ENSORLG00000004041lig49964.066ENSMFAG00000037235LIG49964.066Macaca_fascicularis
ENSORLG00000004041lig49963.956ENSMMUG00000008874LIG49963.956Macaca_mulatta
ENSORLG00000004041lig49964.066ENSMNEG00000023575LIG49964.066Macaca_nemestrina
ENSORLG00000004041lig49963.956ENSMLEG00000026720LIG49963.956Mandrillus_leucophaeus
ENSORLG00000004041lig49984.430ENSMAMG00000008472lig49984.430Mastacembelus_armatus
ENSORLG00000004041lig49985.181ENSMZEG00005001855lig49985.181Maylandia_zebra
ENSORLG00000004041lig410065.175ENSMGAG00000015532LIG410065.175Meleagris_gallopavo
ENSORLG00000004041lig49963.706ENSMOCG00000019000Lig49963.377Microtus_ochrogaster
ENSORLG00000004041lig49984.320ENSMMOG00000004390lig49984.320Mola_mola
ENSORLG00000004041lig49965.011ENSMODG00000025064LIG49965.011Monodelphis_domestica
ENSORLG00000004041lig49983.114ENSMALG00000008555lig49982.785Monopterus_albus
ENSORLG00000004041lig49963.925MGP_CAROLIEiJ_G0030809Lig49963.816Mus_caroli
ENSORLG00000004041lig49963.596ENSMUSG00000049717Lig49963.377Mus_musculus
ENSORLG00000004041lig49963.268MGP_PahariEiJ_G0021270Lig49963.158Mus_pahari
ENSORLG00000004041lig49964.035MGP_SPRETEiJ_G0031917Lig49963.816Mus_spretus
ENSORLG00000004041lig49964.035ENSMPUG00000018675LIG49964.035Mustela_putorius_furo
ENSORLG00000004041lig49963.956ENSMLUG00000001267LIG49963.736Myotis_lucifugus
ENSORLG00000004041lig49964.035ENSNGAG00000013258Lig49963.925Nannospalax_galili
ENSORLG00000004041lig49985.071ENSNBRG00000021252lig49985.071Neolamprologus_brichardi
ENSORLG00000004041lig49963.956ENSNLEG00000007888LIG49963.956Nomascus_leucogenys
ENSORLG00000004041lig49963.216ENSOPRG00000005765LIG49963.216Ochotona_princeps
ENSORLG00000004041lig49963.987ENSODEG00000019683LIG49963.767Octodon_degus
ENSORLG00000004041lig49985.510ENSONIG00000011969lig49885.291Oreochromis_niloticus
ENSORLG00000004041lig49963.925ENSOCUG00000015734LIG49963.925Oryctolagus_cuniculus
ENSORLG00000004041lig410098.794ENSORLG00020019607lig410098.794Oryzias_latipes_hni
ENSORLG00000004041lig410099.342ENSORLG00015017754lig410099.342Oryzias_latipes_hsok
ENSORLG00000004041lig47693.343ENSOMEG00000003459lig49993.343Oryzias_melastigma
ENSORLG00000004041lig49963.755ENSOGAG00000032120LIG49963.755Otolemur_garnettii
ENSORLG00000004041lig48368.079ENSOARG00000005590LIG49968.079Ovis_aries
ENSORLG00000004041lig49964.615ENSPPAG00000032998LIG49964.615Pan_paniscus
ENSORLG00000004041lig49964.097ENSPPRG00000017804LIG49964.097Panthera_pardus
ENSORLG00000004041lig49963.987ENSPTIG00000010051LIG49963.987Panthera_tigris_altaica
ENSORLG00000004041lig49964.725ENSPTRG00000006025LIG49964.725Pan_troglodytes
ENSORLG00000004041lig49964.459ENSPANG00000007562LIG49964.459Papio_anubis
ENSORLG00000004041lig410075.575ENSPKIG00000011645lig49975.356Paramormyrops_kingsleyae
ENSORLG00000004041lig49967.251ENSPSIG00000001504LIG49967.251Pelodiscus_sinensis
ENSORLG00000004041lig49879.665ENSPMGG00000013486lig49978.705Periophthalmus_magnuspinnatus
ENSORLG00000004041lig49962.651ENSPEMG00000000076Lig49962.678Peromyscus_maniculatus_bairdii
ENSORLG00000004041lig49964.145ENSPCIG00000021882LIG49964.145Phascolarctos_cinereus
ENSORLG00000004041lig49884.633ENSPFOG00000000797lig410083.716Poecilia_formosa
ENSORLG00000004041lig49884.521ENSPLAG00000001196lig410083.607Poecilia_latipinna
ENSORLG00000004041lig49884.521ENSPMEG00000021353lig410083.607Poecilia_mexicana
ENSORLG00000004041lig49884.076ENSPREG00000007323lig410083.169Poecilia_reticulata
ENSORLG00000004041lig49963.736ENSPPYG00000005540LIG49963.736Pongo_abelii
ENSORLG00000004041lig49963.407ENSPVAG00000016403LIG49963.407Pteropus_vampyrus
ENSORLG00000004041lig49985.291ENSPNYG00000009660lig49985.291Pundamilia_nyererei
ENSORLG00000004041lig49979.341ENSPNAG00000028056lig49979.341Pygocentrus_nattereri
ENSORLG00000004041lig49979.341ENSPNAG00000028069LIG49979.341Pygocentrus_nattereri
ENSORLG00000004041lig49963.268ENSRNOG00000014605Lig49963.158Rattus_norvegicus
ENSORLG00000004041lig49963.407ENSRBIG00000039962LIG49963.407Rhinopithecus_bieti
ENSORLG00000004041lig49964.176ENSRROG00000006040LIG49964.176Rhinopithecus_roxellana
ENSORLG00000004041lig49964.066ENSSBOG00000019029LIG49963.846Saimiri_boliviensis_boliviensis
ENSORLG00000004041lig49961.842ENSSHAG00000009525LIG49961.842Sarcophilus_harrisii
ENSORLG00000004041lig49976.619ENSSFOG00015012835lig49976.400Scleropages_formosus
ENSORLG00000004041lig49979.780ENSSMAG00000011267lig49979.451Scophthalmus_maximus
ENSORLG00000004041lig49983.515ENSSDUG00000010343lig49983.297Seriola_dumerili
ENSORLG00000004041lig49982.424ENSSLDG00000003239lig49982.096Seriola_lalandi_dorsalis
ENSORLG00000004041lig49864.609ENSSARG00000006573LIG49964.609Sorex_araneus
ENSORLG00000004041lig49267.734ENSSPUG00000002444LIG410067.734Sphenodon_punctatus
ENSORLG00000004041lig49984.649ENSSPAG00000001609lig49984.649Stegastes_partitus
ENSORLG00000004041lig49963.846ENSSSCG00000009540LIG49964.145Sus_scrofa
ENSORLG00000004041lig49966.334ENSTGUG00000010795LIG49966.224Taeniopygia_guttata
ENSORLG00000004041lig49982.566ENSTRUG00000009984lig49982.566Takifugu_rubripes
ENSORLG00000004041lig49981.648ENSTNIG00000010348lig49981.648Tetraodon_nigroviridis
ENSORLG00000004041lig49963.956ENSTBEG00000017741LIG49963.956Tupaia_belangeri
ENSORLG00000004041lig49963.407ENSTTRG00000012660LIG49963.407Tursiops_truncatus
ENSORLG00000004041lig49863.204ENSUAMG00000003773LIG49963.204Ursus_americanus
ENSORLG00000004041lig49966.375ENSXETG00000002654lig49966.375Xenopus_tropicalis
ENSORLG00000004041lig49884.281ENSXCOG00000017401lig410083.388Xiphophorus_couchianus
ENSORLG00000004041lig49884.615ENSXMAG00000015142lig49983.716Xiphophorus_maculatus

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