EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000004135 (Gene tree)
Gene ID: 101164593
Gene Symbol: -
Alias: -
Full Name: RNA binding protein%2C mRNA processing factor
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 46723 bases
Position: chr18:8064876-8111598
Accession: 101164593
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000005175	RRM_1	PF00076.22	3.2e-11	1	1
ENSORLP00000005172	RRM_1	PF00076.22	3.6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000005176	-	723	XM_004079661	ENSORLP00000005175	194 (aa)	XP_004079709	H2LGS6
ENSORLT00000005173	-	756	-	ENSORLP00000005172	205 (aa)	-	H2LGS3

Gene Model

Click here to download ENSORLG00000004135's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000004135's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000004135	-	91	71.739	ENSORLG00000027223	rbpms2b	70	73.913

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000004135	-	100	83.673	ENSG00000157110	RBPMS	100	83.673	Homo_sapiens
ENSORLG00000004135	-	100	97.423	ENSAPOG00000022304	RBPMS	100	97.423	Acanthochromis_polyacanthus
ENSORLG00000004135	-	84	85.366	ENSAMEG00000001522	RBPMS	75	85.366	Ailuropoda_melanoleuca
ENSORLG00000004135	-	70	85.294	ENSACIG00000011395	RBPMS	77	83.333	Amphilophus_citrinellus
ENSORLG00000004135	-	100	97.423	ENSAOCG00000007731	RBPMS	100	97.423	Amphiprion_ocellaris
ENSORLG00000004135	-	100	97.423	ENSAPEG00000023543	RBPMS	100	97.423	Amphiprion_percula
ENSORLG00000004135	-	100	97.423	ENSATEG00000018184	RBPMS	100	97.423	Anabas_testudineus
ENSORLG00000004135	-	100	82.653	ENSACAG00000003012	RBPMS	100	81.122	Anolis_carolinensis
ENSORLG00000004135	-	100	83.673	ENSANAG00000028150	RBPMS	100	83.673	Aotus_nancymaae
ENSORLG00000004135	-	100	97.938	ENSACLG00000002926	RBPMS	100	97.938	Astatotilapia_calliptera
ENSORLG00000004135	-	99	91.667	ENSAMXG00000033491	rbpms	99	91.667	Astyanax_mexicanus
ENSORLG00000004135	-	100	83.163	ENSBTAG00000033727	RBPMS	81	83.616	Bos_taurus
ENSORLG00000004135	-	100	83.673	ENSCJAG00000012366	RBPMS	100	83.673	Callithrix_jacchus
ENSORLG00000004135	-	90	84.181	ENSCAFG00000006503	RBPMS	81	84.181	Canis_familiaris
ENSORLG00000004135	-	90	84.181	ENSCAFG00020001031	RBPMS	81	84.181	Canis_lupus_dingo
ENSORLG00000004135	-	100	77.157	ENSCHIG00000027156	RBPMS	100	77.157	Capra_hircus
ENSORLG00000004135	-	57	90.000	ENSTSYG00000013982	RBPMS	83	90.000	Carlito_syrichta
ENSORLG00000004135	-	100	83.673	ENSCPOG00000038597	RBPMS	100	83.673	Cavia_porcellus
ENSORLG00000004135	-	100	83.673	ENSCCAG00000033226	RBPMS	100	83.673	Cebus_capucinus
ENSORLG00000004135	-	100	83.673	ENSCATG00000036486	RBPMS	100	83.673	Cercocebus_atys
ENSORLG00000004135	-	89	87.356	ENSCLAG00000001518	RBPMS	100	87.356	Chinchilla_lanigera
ENSORLG00000004135	-	90	84.181	ENSCSAG00000015838	RBPMS	81	84.181	Chlorocebus_sabaeus
ENSORLG00000004135	-	79	88.387	ENSCHOG00000008745	RBPMS	79	88.387	Choloepus_hoffmanni
ENSORLG00000004135	-	100	81.026	ENSCPBG00000013437	RBPMS	100	81.026	Chrysemys_picta_bellii
ENSORLG00000004135	-	89	87.356	ENSCANG00000034997	RBPMS	100	87.356	Colobus_angolensis_palliatus
ENSORLG00000004135	-	99	78.462	ENSCGRG00001002814	Rbpms	99	82.564	Cricetulus_griseus_chok1gshd
ENSORLG00000004135	-	89	82.286	ENSCGRG00000006095	Rbpms	100	86.857	Cricetulus_griseus_crigri
ENSORLG00000004135	-	100	96.392	ENSCSEG00000002777	rbpms	100	96.392	Cynoglossus_semilaevis
ENSORLG00000004135	-	100	97.423	ENSCVAG00000013975	RBPMS	100	97.423	Cyprinodon_variegatus
ENSORLG00000004135	-	87	71.006	ENSDARG00000099396	rbpms	100	71.006	Danio_rerio
ENSORLG00000004135	-	90	83.616	ENSDNOG00000008126	RBPMS	81	83.616	Dasypus_novemcinctus
ENSORLG00000004135	-	90	84.746	ENSETEG00000017582	RBPMS	81	84.746	Echinops_telfairi
ENSORLG00000004135	-	79	88.387	ENSEASG00005016962	RBPMS	78	88.387	Equus_asinus_asinus
ENSORLG00000004135	-	90	84.181	ENSECAG00000020735	RBPMS	78	88.387	Equus_caballus
ENSORLG00000004135	-	100	92.784	ENSELUG00000009787	rbpms	100	92.784	Esox_lucius
ENSORLG00000004135	-	100	83.673	ENSFCAG00000025639	-	100	83.673	Felis_catus
ENSORLG00000004135	-	88	52.907	ENSFCAG00000022292	-	93	47.959	Felis_catus
ENSORLG00000004135	-	89	87.356	ENSFDAG00000012078	RBPMS	100	87.356	Fukomys_damarensis
ENSORLG00000004135	-	100	96.907	ENSFHEG00000000618	rbpms	100	96.907	Fundulus_heteroclitus
ENSORLG00000004135	-	77	60.000	ENSGMOG00000009646	-	100	60.000	Gadus_morhua
ENSORLG00000004135	-	100	97.938	ENSGAFG00000016566	RBPMS	100	97.938	Gambusia_affinis
ENSORLG00000004135	-	100	86.598	ENSGACG00000019471	rbpms	100	86.598	Gasterosteus_aculeatus
ENSORLG00000004135	-	59	86.087	ENSGAGG00000023634	RBPMS	53	83.740	Gopherus_agassizii
ENSORLG00000004135	-	100	97.938	ENSHBUG00000005888	RBPMS	100	97.938	Haplochromis_burtoni
ENSORLG00000004135	-	100	83.673	ENSHGLG00000002303	RBPMS	100	83.673	Heterocephalus_glaber_female
ENSORLG00000004135	-	89	87.356	ENSHGLG00100008787	RBPMS	100	87.356	Heterocephalus_glaber_male
ENSORLG00000004135	-	98	96.859	ENSHCOG00000005774	rbpms	99	96.859	Hippocampus_comes
ENSORLG00000004135	-	97	87.895	ENSIPUG00000012459	RBPMS	99	87.895	Ictalurus_punctatus
ENSORLG00000004135	-	100	83.673	ENSSTOG00000026546	RBPMS	100	83.673	Ictidomys_tridecemlineatus
ENSORLG00000004135	-	100	83.673	ENSJJAG00000014024	Rbpms	100	83.673	Jaculus_jaculus
ENSORLG00000004135	-	89	79.545	ENSKMAG00000006377	RBPMS	90	80.337	Kryptolebias_marmoratus
ENSORLG00000004135	-	100	97.423	ENSLBEG00000027989	RBPMS	100	97.423	Labrus_bergylta
ENSORLG00000004135	-	90	92.571	ENSLOCG00000013199	RBPMS	96	93.143	Lepisosteus_oculatus
ENSORLG00000004135	-	90	84.181	ENSLAFG00000000209	RBPMS	81	84.181	Loxodonta_africana
ENSORLG00000004135	-	100	83.673	ENSMFAG00000036911	RBPMS	100	83.673	Macaca_fascicularis
ENSORLG00000004135	-	100	83.673	ENSMMUG00000000458	RBPMS	100	83.673	Macaca_mulatta
ENSORLG00000004135	-	100	83.673	ENSMNEG00000043805	RBPMS	100	83.673	Macaca_nemestrina
ENSORLG00000004135	-	89	87.356	ENSMLEG00000015635	RBPMS	100	87.356	Mandrillus_leucophaeus
ENSORLG00000004135	-	95	76.216	ENSMAMG00000004604	RBPMS	94	76.216	Mastacembelus_armatus
ENSORLG00000004135	-	100	97.938	ENSMZEG00005000698	RBPMS	100	97.938	Maylandia_zebra
ENSORLG00000004135	-	90	85.714	ENSMGAG00000005088	RBPMS	90	85.714	Meleagris_gallopavo
ENSORLG00000004135	-	99	78.462	ENSMAUG00000018892	Rbpms	99	82.564	Mesocricetus_auratus
ENSORLG00000004135	-	100	79.592	ENSMICG00000001295	RBPMS	100	83.163	Microcebus_murinus
ENSORLG00000004135	-	99	78.462	ENSMOCG00000014009	Rbpms	99	82.564	Microtus_ochrogaster
ENSORLG00000004135	-	82	94.969	ENSMMOG00000012036	RBPMS	67	94.969	Mola_mola
ENSORLG00000004135	-	91	88.136	ENSMODG00000019006	RBPMS	92	81.443	Monodelphis_domestica
ENSORLG00000004135	-	100	95.876	ENSMALG00000003261	RBPMS	100	95.876	Monopterus_albus
ENSORLG00000004135	-	99	77.949	MGP_CAROLIEiJ_G0030970	Rbpms	100	82.234	Mus_caroli
ENSORLG00000004135	-	99	77.949	ENSMUSG00000031586	Rbpms	100	82.234	Mus_musculus
ENSORLG00000004135	-	100	78.173	MGP_PahariEiJ_G0021439	Rbpms	100	82.234	Mus_pahari
ENSORLG00000004135	-	99	77.949	MGP_SPRETEiJ_G0032087	Rbpms	100	82.234	Mus_spretus
ENSORLG00000004135	-	84	85.366	ENSMPUG00000011314	RBPMS	75	85.366	Mustela_putorius_furo
ENSORLG00000004135	-	100	83.673	ENSMLUG00000009391	RBPMS	100	84.810	Myotis_lucifugus
ENSORLG00000004135	-	90	84.181	ENSNGAG00000011141	Rbpms	81	84.181	Nannospalax_galili
ENSORLG00000004135	-	90	98.851	ENSNBRG00000003313	RBPMS	97	99.425	Neolamprologus_brichardi
ENSORLG00000004135	-	100	83.673	ENSNLEG00000036183	-	100	83.673	Nomascus_leucogenys
ENSORLG00000004135	-	68	84.091	ENSOPRG00000013151	RBPMS	60	84.091	Ochotona_princeps
ENSORLG00000004135	-	100	83.673	ENSODEG00000006700	RBPMS	100	83.673	Octodon_degus
ENSORLG00000004135	-	90	98.851	ENSONIG00000007546	RBPMS	100	98.851	Oreochromis_niloticus
ENSORLG00000004135	-	90	84.181	ENSOCUG00000008572	RBPMS	81	84.181	Oryctolagus_cuniculus
ENSORLG00000004135	-	100	99.512	ENSORLG00020016179	RBPMS	100	99.512	Oryzias_latipes_hni
ENSORLG00000004135	-	100	99.512	ENSORLG00015013770	RBPMS	100	99.512	Oryzias_latipes_hsok
ENSORLG00000004135	-	100	97.938	ENSOMEG00000005044	RBPMS	100	97.938	Oryzias_melastigma
ENSORLG00000004135	-	92	82.873	ENSOGAG00000030298	RBPMS	81	82.873	Otolemur_garnettii
ENSORLG00000004135	-	65	83.333	ENSOARG00000010366	RBPMS	89	82.677	Ovis_aries
ENSORLG00000004135	-	89	87.356	ENSPPAG00000033108	RBPMS	100	87.356	Pan_paniscus
ENSORLG00000004135	-	100	83.673	ENSPPRG00000004836	RBPMS	100	83.673	Panthera_pardus
ENSORLG00000004135	-	89	87.356	ENSPTIG00000015964	RBPMS	89	87.356	Panthera_tigris_altaica
ENSORLG00000004135	-	100	83.673	ENSPTRG00000020135	RBPMS	100	83.673	Pan_troglodytes
ENSORLG00000004135	-	100	83.673	ENSPANG00000008143	RBPMS	100	83.673	Papio_anubis
ENSORLG00000004135	-	97	89.362	ENSPKIG00000004836	rbpms	99	89.362	Paramormyrops_kingsleyae
ENSORLG00000004135	-	100	91.237	ENSPKIG00000000535	-	100	91.237	Paramormyrops_kingsleyae
ENSORLG00000004135	-	89	85.632	ENSPSIG00000006136	RBPMS	99	85.632	Pelodiscus_sinensis
ENSORLG00000004135	-	81	96.835	ENSPMGG00000018012	RBPMS	74	96.835	Periophthalmus_magnuspinnatus
ENSORLG00000004135	-	99	78.571	ENSPEMG00000021130	Rbpms	100	82.323	Peromyscus_maniculatus_bairdii
ENSORLG00000004135	-	90	86.364	ENSPCIG00000019298	-	71	82.456	Phascolarctos_cinereus
ENSORLG00000004135	-	100	97.938	ENSPFOG00000017158	RBPMS	100	97.938	Poecilia_formosa
ENSORLG00000004135	-	100	97.938	ENSPLAG00000010767	RBPMS	100	97.938	Poecilia_latipinna
ENSORLG00000004135	-	100	97.938	ENSPMEG00000009788	RBPMS	100	97.938	Poecilia_mexicana
ENSORLG00000004135	-	100	97.938	ENSPREG00000016959	RBPMS	100	97.938	Poecilia_reticulata
ENSORLG00000004135	-	90	84.181	ENSPPYG00000018487	RBPMS	81	84.181	Pongo_abelii
ENSORLG00000004135	-	57	90.000	ENSPCAG00000013493	-	100	90.000	Procavia_capensis
ENSORLG00000004135	-	92	68.508	ENSPCOG00000015948	RBPMS	75	85.385	Propithecus_coquereli
ENSORLG00000004135	-	90	84.181	ENSPVAG00000001661	RBPMS	81	84.181	Pteropus_vampyrus
ENSORLG00000004135	-	100	97.938	ENSPNYG00000001172	RBPMS	100	97.938	Pundamilia_nyererei
ENSORLG00000004135	-	99	94.792	ENSPNAG00000029160	RBPMS	99	94.792	Pygocentrus_nattereri
ENSORLG00000004135	-	92	77.473	ENSRNOG00000013328	Rbpms	88	81.868	Rattus_norvegicus
ENSORLG00000004135	-	89	87.356	ENSRBIG00000038218	RBPMS	100	87.356	Rhinopithecus_bieti
ENSORLG00000004135	-	100	83.673	ENSRROG00000042518	RBPMS	100	83.673	Rhinopithecus_roxellana
ENSORLG00000004135	-	100	83.163	ENSSBOG00000026670	RBPMS	100	83.163	Saimiri_boliviensis_boliviensis
ENSORLG00000004135	-	91	85.955	ENSSHAG00000010114	RBPMS	92	85.955	Sarcophilus_harrisii
ENSORLG00000004135	-	100	89.691	ENSSFOG00015000417	rbpms	100	89.691	Scleropages_formosus
ENSORLG00000004135	-	90	90.230	ENSSFOG00015017481	-	99	86.702	Scleropages_formosus
ENSORLG00000004135	-	100	96.392	ENSSMAG00000010871	rbpms	100	96.392	Scophthalmus_maximus
ENSORLG00000004135	-	100	97.938	ENSSDUG00000010894	RBPMS	100	97.938	Seriola_dumerili
ENSORLG00000004135	-	100	97.938	ENSSLDG00000012916	RBPMS	100	97.938	Seriola_lalandi_dorsalis
ENSORLG00000004135	-	90	79.661	ENSSARG00000000274	RBPMS	81	79.661	Sorex_araneus
ENSORLG00000004135	-	90	85.795	ENSSPUG00000017525	RBPMS	67	86.932	Sphenodon_punctatus
ENSORLG00000004135	-	89	77.457	ENSSPAG00000004777	rbpms	82	94.074	Stegastes_partitus
ENSORLG00000004135	-	100	83.673	ENSSSCG00000015846	RBPMS	100	83.673	Sus_scrofa
ENSORLG00000004135	-	97	81.053	ENSTGUG00000001776	RBPMS	100	81.053	Taeniopygia_guttata
ENSORLG00000004135	-	100	95.361	ENSTRUG00000000041	RBPMS	100	95.361	Takifugu_rubripes
ENSORLG00000004135	-	90	84.091	ENSTTRG00000012451	RBPMS	81	84.091	Tursiops_truncatus
ENSORLG00000004135	-	60	86.207	ENSUAMG00000026353	RBPMS	76	86.207	Ursus_americanus
ENSORLG00000004135	-	85	86.061	ENSUMAG00000007347	RBPMS	76	88.462	Ursus_maritimus
ENSORLG00000004135	-	79	88.387	ENSVPAG00000010991	RBPMS	79	88.387	Vicugna_pacos
ENSORLG00000004135	-	100	83.673	ENSVVUG00000019770	RBPMS	100	83.673	Vulpes_vulpes
ENSORLG00000004135	-	89	88.506	ENSXETG00000011290	rbpms	100	88.506	Xenopus_tropicalis
ENSORLG00000004135	-	90	92.529	ENSXCOG00000002436	RBPMS	90	92.529	Xiphophorus_couchianus
ENSORLG00000004135	-	100	97.938	ENSXMAG00000027637	RBPMS	100	97.938	Xiphophorus_maculatus