EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000004232 (Gene tree)
Gene ID: 101167184
Gene Symbol: -
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 7619 bases
Position: chr2:17527182-17534800
Accession: 101167184
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000005300	RRM_1	PF00076.22	4.5e-30	1	2
ENSORLP00000005300	RRM_1	PF00076.22	4.5e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000005301	-	1674	XM_004066570	ENSORLP00000005300	506 (aa)	XP_004066618	H2LH46

Gene Model

Click here to download ENSORLG00000004232's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000004232's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000004232	-	77	55.257	ENSORLG00000007459	sfpq	52	60.163
ENSORLG00000004232	-	71	58.639	ENSORLG00000012801	nono	87	58.901

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000004232	-	87	64.182	ENSG00000121390	PSPC1	82	79.012	Homo_sapiens
ENSORLG00000004232	-	100	77.863	ENSAPOG00000015946	pspc1	100	78.244	Acanthochromis_polyacanthus
ENSORLG00000004232	-	92	62.231	ENSAMEG00000017420	PSPC1	88	70.213	Ailuropoda_melanoleuca
ENSORLG00000004232	-	100	70.817	ENSACIG00000018695	pspc1	100	70.441	Amphilophus_citrinellus
ENSORLG00000004232	-	100	77.376	ENSAOCG00000005279	pspc1	100	77.947	Amphiprion_ocellaris
ENSORLG00000004232	-	100	77.820	ENSAPEG00000015927	pspc1	100	78.394	Amphiprion_percula
ENSORLG00000004232	-	100	66.925	ENSATEG00000004878	pspc1	100	65.458	Anabas_testudineus
ENSORLG00000004232	-	75	64.593	ENSAPLG00000006246	PSPC1	100	68.460	Anas_platyrhynchos
ENSORLG00000004232	-	67	65.439	ENSAPLG00000003643	SFPQ	82	57.778	Anas_platyrhynchos
ENSORLG00000004232	-	87	64.803	ENSACAG00000002093	PSPC1	91	67.470	Anolis_carolinensis
ENSORLG00000004232	-	71	58.967	ENSACAG00000013307	-	73	51.004	Anolis_carolinensis
ENSORLG00000004232	-	91	62.648	ENSANAG00000000059	PSPC1	83	76.543	Aotus_nancymaae
ENSORLG00000004232	-	100	69.804	ENSACLG00000027220	pspc1	100	69.482	Astatotilapia_calliptera
ENSORLG00000004232	-	100	59.889	ENSAMXG00000036881	pspc1	100	63.803	Astyanax_mexicanus
ENSORLG00000004232	-	93	62.089	ENSBTAG00000003934	PSPC1	89	70.000	Bos_taurus
ENSORLG00000004232	-	87	66.091	ENSCJAG00000004554	PSPC1	88	70.213	Callithrix_jacchus
ENSORLG00000004232	-	87	64.389	ENSCAFG00020002009	PSPC1	83	79.012	Canis_lupus_dingo
ENSORLG00000004232	-	93	62.089	ENSCHIG00000016708	PSPC1	89	70.000	Capra_hircus
ENSORLG00000004232	-	75	61.576	ENSTSYG00000032882	PSPC1	88	62.935	Carlito_syrichta
ENSORLG00000004232	-	87	64.182	ENSCPOG00000000395	PSPC1	83	79.012	Cavia_porcellus
ENSORLG00000004232	-	91	62.648	ENSCCAG00000033498	PSPC1	88	70.213	Cebus_capucinus
ENSORLG00000004232	-	87	64.182	ENSCATG00000036434	PSPC1	90	79.012	Cercocebus_atys
ENSORLG00000004232	-	76	62.587	ENSCLAG00000005241	PSPC1	92	68.019	Chinchilla_lanigera
ENSORLG00000004232	-	92	58.546	ENSCHOG00000008913	PSPC1	88	66.738	Choloepus_hoffmanni
ENSORLG00000004232	-	87	65.756	ENSCPBG00000020859	PSPC1	88	69.165	Chrysemys_picta_bellii
ENSORLG00000004232	-	86	44.493	ENSCSAVG00000003533	-	81	45.714	Ciona_savignyi
ENSORLG00000004232	-	82	53.472	ENSCANG00000018948	PSPC1	87	81.298	Colobus_angolensis_palliatus
ENSORLG00000004232	-	92	62.745	ENSCGRG00001018368	Pspc1	88	70.000	Cricetulus_griseus_chok1gshd
ENSORLG00000004232	-	92	62.745	ENSCGRG00000011724	Pspc1	88	70.000	Cricetulus_griseus_crigri
ENSORLG00000004232	-	100	69.808	ENSCVAG00000007679	-	100	73.166	Cyprinodon_variegatus
ENSORLG00000004232	-	100	61.582	ENSDARG00000006621	pspc1	100	66.998	Danio_rerio
ENSORLG00000004232	-	87	64.596	ENSDNOG00000011078	PSPC1	88	70.000	Dasypus_novemcinctus
ENSORLG00000004232	-	87	62.500	ENSDORG00000016050	Pspc1	88	67.591	Dipodomys_ordii
ENSORLG00000004232	-	52	78.218	ENSETEG00000000502	-	60	78.218	Echinops_telfairi
ENSORLG00000004232	-	60	42.857	ENSEBUG00000010133	pspc1	72	47.273	Eptatretus_burgeri
ENSORLG00000004232	-	91	52.579	ENSEBUG00000003964	-	63	65.625	Eptatretus_burgeri
ENSORLG00000004232	-	87	64.596	ENSEASG00005000119	PSPC1	87	73.803	Equus_asinus_asinus
ENSORLG00000004232	-	87	64.596	ENSECAG00000017286	PSPC1	87	73.803	Equus_caballus
ENSORLG00000004232	-	51	70.000	ENSEEUG00000011288	-	51	70.000	Erinaceus_europaeus
ENSORLG00000004232	-	100	65.556	ENSELUG00000003746	pspc1	100	65.934	Esox_lucius
ENSORLG00000004232	-	87	64.596	ENSFCAG00000027841	PSPC1	83	79.012	Felis_catus
ENSORLG00000004232	-	89	65.298	ENSFALG00000008750	PSPC1	89	68.553	Ficedula_albicollis
ENSORLG00000004232	-	87	66.809	ENSFDAG00000002617	PSPC1	90	69.787	Fukomys_damarensis
ENSORLG00000004232	-	100	63.027	ENSGMOG00000015074	pspc1	100	63.671	Gadus_morhua
ENSORLG00000004232	-	87	65.966	ENSGALG00000017142	PSPC1	88	69.379	Gallus_gallus
ENSORLG00000004232	-	76	78.372	ENSGAFG00000006327	pspc1	81	78.117	Gambusia_affinis
ENSORLG00000004232	-	100	67.121	ENSGACG00000014901	pspc1	94	79.104	Gasterosteus_aculeatus
ENSORLG00000004232	-	88	55.269	ENSGAGG00000017325	-	69	56.616	Gopherus_agassizii
ENSORLG00000004232	-	87	65.756	ENSGAGG00000019164	PSPC1	88	69.165	Gopherus_agassizii
ENSORLG00000004232	-	87	64.182	ENSGGOG00000003414	PSPC1	82	79.012	Gorilla_gorilla
ENSORLG00000004232	-	100	77.992	ENSHBUG00000001139	pspc1	100	79.151	Haplochromis_burtoni
ENSORLG00000004232	-	92	64.386	ENSHGLG00000018811	PSPC1	89	69.787	Heterocephalus_glaber_female
ENSORLG00000004232	-	57	80.903	ENSHGLG00100007962	PSPC1	87	81.469	Heterocephalus_glaber_male
ENSORLG00000004232	-	81	72.488	ENSHCOG00000013251	pspc1	96	72.248	Hippocampus_comes
ENSORLG00000004232	-	100	65.918	ENSIPUG00000013192	pspc1	100	66.854	Ictalurus_punctatus
ENSORLG00000004232	-	90	63.074	ENSSTOG00000026833	PSPC1	82	79.012	Ictidomys_tridecemlineatus
ENSORLG00000004232	-	87	64.182	ENSJJAG00000018334	Pspc1	88	70.000	Jaculus_jaculus
ENSORLG00000004232	-	100	66.339	ENSKMAG00000013525	-	98	73.770	Kryptolebias_marmoratus
ENSORLG00000004232	-	97	69.260	ENSLBEG00000004474	pspc1	98	72.190	Labrus_bergylta
ENSORLG00000004232	-	100	61.993	ENSLACG00000010762	PSPC1	100	62.243	Latimeria_chalumnae
ENSORLG00000004232	-	100	65.977	ENSLOCG00000010832	pspc1	99	66.604	Lepisosteus_oculatus
ENSORLG00000004232	-	87	64.596	ENSLAFG00000010968	PSPC1	88	69.742	Loxodonta_africana
ENSORLG00000004232	-	87	64.182	ENSMFAG00000032728	PSPC1	91	79.077	Macaca_fascicularis
ENSORLG00000004232	-	87	64.182	ENSMMUG00000020262	PSPC1	88	79.012	Macaca_mulatta
ENSORLG00000004232	-	87	64.182	ENSMNEG00000027401	PSPC1	85	74.564	Macaca_nemestrina
ENSORLG00000004232	-	75	63.420	ENSMLEG00000039043	PSPC1	94	70.343	Mandrillus_leucophaeus
ENSORLG00000004232	-	100	75.330	ENSMAMG00000004333	pspc1	100	74.812	Mastacembelus_armatus
ENSORLG00000004232	-	100	69.804	ENSMZEG00005005726	pspc1	100	69.482	Maylandia_zebra
ENSORLG00000004232	-	76	64.524	ENSMGAG00000015134	PSPC1	100	68.370	Meleagris_gallopavo
ENSORLG00000004232	-	80	66.121	ENSMAUG00000021067	Pspc1	85	67.003	Mesocricetus_auratus
ENSORLG00000004232	-	90	66.667	ENSMICG00000013970	PSPC1	83	79.012	Microcebus_murinus
ENSORLG00000004232	-	87	63.975	ENSMOCG00000006060	Pspc1	88	69.787	Microtus_ochrogaster
ENSORLG00000004232	-	73	71.429	ENSMMOG00000004352	pspc1	65	71.429	Mola_mola
ENSORLG00000004232	-	77	71.429	ENSMODG00000008029	PSPC1	66	73.966	Monodelphis_domestica
ENSORLG00000004232	-	100	75.828	ENSMALG00000008914	pspc1	100	76.998	Monopterus_albus
ENSORLG00000004232	-	82	67.882	MGP_CAROLIEiJ_G0019341	Pspc1	86	73.881	Mus_caroli
ENSORLG00000004232	-	87	64.108	ENSMUSG00000021938	Pspc1	86	73.881	Mus_musculus
ENSORLG00000004232	-	87	64.108	MGP_PahariEiJ_G0030359	Pspc1	86	73.881	Mus_pahari
ENSORLG00000004232	-	87	64.108	MGP_SPRETEiJ_G0020232	Pspc1	86	73.881	Mus_spretus
ENSORLG00000004232	-	87	64.389	ENSMPUG00000013347	PSPC1	88	70.213	Mustela_putorius_furo
ENSORLG00000004232	-	87	65.417	ENSMLUG00000017663	PSPC1	89	69.979	Myotis_lucifugus
ENSORLG00000004232	-	87	65.618	ENSNGAG00000011271	Pspc1	88	69.296	Nannospalax_galili
ENSORLG00000004232	-	76	75.000	ENSNBRG00000014059	pspc1	92	71.717	Neolamprologus_brichardi
ENSORLG00000004232	-	87	64.182	ENSNLEG00000001294	PSPC1	88	70.213	Nomascus_leucogenys
ENSORLG00000004232	-	87	56.394	ENSODEG00000007817	-	88	58.547	Octodon_degus
ENSORLG00000004232	-	87	63.853	ENSODEG00000019012	-	88	65.227	Octodon_degus
ENSORLG00000004232	-	100	78.613	ENSONIG00000012010	pspc1	99	79.769	Oreochromis_niloticus
ENSORLG00000004232	-	81	58.216	ENSOANG00000011381	-	92	55.991	Ornithorhynchus_anatinus
ENSORLG00000004232	-	70	67.460	ENSOANG00000009017	-	100	69.853	Ornithorhynchus_anatinus
ENSORLG00000004232	-	87	64.182	ENSOCUG00000006153	PSPC1	88	70.000	Oryctolagus_cuniculus
ENSORLG00000004232	-	100	97.826	ENSORLG00020000578	PSPC1	100	97.826	Oryzias_latipes_hni
ENSORLG00000004232	-	100	97.628	ENSORLG00015017480	pspc1	100	97.628	Oryzias_latipes_hsok
ENSORLG00000004232	-	91	63.241	ENSOGAG00000012643	PSPC1	88	70.213	Otolemur_garnettii
ENSORLG00000004232	-	86	64.241	ENSOARG00000014163	PSPC1	95	69.658	Ovis_aries
ENSORLG00000004232	-	88	58.921	ENSPPAG00000009836	PSPC1	92	79.012	Pan_paniscus
ENSORLG00000004232	-	87	64.596	ENSPPRG00000008833	PSPC1	88	70.213	Panthera_pardus
ENSORLG00000004232	-	75	63.420	ENSPTIG00000016917	PSPC1	84	70.098	Panthera_tigris_altaica
ENSORLG00000004232	-	82	68.192	ENSPTRG00000005677	PSPC1	82	79.012	Pan_troglodytes
ENSORLG00000004232	-	87	64.182	ENSPANG00000001992	PSPC1	89	79.077	Papio_anubis
ENSORLG00000004232	-	100	60.108	ENSPKIG00000003578	pspc1	100	64.432	Paramormyrops_kingsleyae
ENSORLG00000004232	-	87	66.098	ENSPSIG00000005168	PSPC1	88	68.308	Pelodiscus_sinensis
ENSORLG00000004232	-	70	69.806	ENSPMGG00000015135	pspc1	98	68.732	Periophthalmus_magnuspinnatus
ENSORLG00000004232	-	87	63.975	ENSPEMG00000015214	Pspc1	88	69.787	Peromyscus_maniculatus_bairdii
ENSORLG00000004232	-	57	43.197	ENSPMAG00000004618	pspc1	83	43.956	Petromyzon_marinus
ENSORLG00000004232	-	86	66.447	ENSPCIG00000017680	PSPC1	88	70.213	Phascolarctos_cinereus
ENSORLG00000004232	-	99	77.973	ENSPFOG00000003362	pspc1	100	77.778	Poecilia_formosa
ENSORLG00000004232	-	76	54.774	ENSPLAG00000004407	-	54	53.563	Poecilia_latipinna
ENSORLG00000004232	-	100	77.992	ENSPLAG00000011540	pspc1	100	77.799	Poecilia_latipinna
ENSORLG00000004232	-	100	77.606	ENSPMEG00000008322	pspc1	100	77.413	Poecilia_mexicana
ENSORLG00000004232	-	81	53.555	ENSPMEG00000001025	-	53	54.054	Poecilia_mexicana
ENSORLG00000004232	-	100	77.220	ENSPREG00000007786	pspc1	100	77.027	Poecilia_reticulata
ENSORLG00000004232	-	87	63.768	ENSPPYG00000005186	PSPC1	84	74.564	Pongo_abelii
ENSORLG00000004232	-	91	63.232	ENSPCOG00000014364	PSPC1	88	67.021	Propithecus_coquereli
ENSORLG00000004232	-	87	66.316	ENSPVAG00000005036	PSPC1	89	69.787	Pteropus_vampyrus
ENSORLG00000004232	-	100	70.000	ENSPNYG00000008893	pspc1	100	69.674	Pundamilia_nyererei
ENSORLG00000004232	-	100	65.028	ENSPNAG00000016511	pspc1	100	65.977	Pygocentrus_nattereri
ENSORLG00000004232	-	90	62.475	ENSRNOG00000020782	Pspc1	86	74.065	Rattus_norvegicus
ENSORLG00000004232	-	91	63.095	ENSRBIG00000036057	PSPC1	91	79.012	Rhinopithecus_bieti
ENSORLG00000004232	-	92	62.035	ENSRROG00000036334	PSPC1	82	79.012	Rhinopithecus_roxellana
ENSORLG00000004232	-	77	57.176	ENSSBOG00000028172	PSPC1	91	76.140	Saimiri_boliviensis_boliviensis
ENSORLG00000004232	-	86	61.255	ENSSHAG00000004696	PSPC1	88	65.254	Sarcophilus_harrisii
ENSORLG00000004232	-	87	69.198	ENSSFOG00015001395	pspc1	99	73.134	Scleropages_formosus
ENSORLG00000004232	-	100	76.038	ENSSMAG00000001761	pspc1	100	74.858	Scophthalmus_maximus
ENSORLG00000004232	-	100	74.259	ENSSDUG00000010651	pspc1	100	75.970	Seriola_dumerili
ENSORLG00000004232	-	100	69.368	ENSSLDG00000004284	pspc1	100	69.305	Seriola_lalandi_dorsalis
ENSORLG00000004232	-	82	62.273	ENSSARG00000000888	PSPC1	89	64.468	Sorex_araneus
ENSORLG00000004232	-	86	51.454	ENSSPUG00000001136	-	64	51.454	Sphenodon_punctatus
ENSORLG00000004232	-	90	57.500	ENSSPUG00000008550	PSPC1	88	59.829	Sphenodon_punctatus
ENSORLG00000004232	-	100	77.632	ENSSPAG00000001921	pspc1	100	78.008	Stegastes_partitus
ENSORLG00000004232	-	87	64.389	ENSSSCG00000009569	PSPC1	84	78.704	Sus_scrofa
ENSORLG00000004232	-	87	65.966	ENSTGUG00000011295	PSPC1	99	69.379	Taeniopygia_guttata
ENSORLG00000004232	-	100	69.632	ENSTRUG00000011335	pspc1	100	68.919	Takifugu_rubripes
ENSORLG00000004232	-	100	68.350	ENSTNIG00000010358	pspc1	100	70.955	Tetraodon_nigroviridis
ENSORLG00000004232	-	92	56.148	ENSTBEG00000002361	PSPC1	88	60.613	Tupaia_belangeri
ENSORLG00000004232	-	91	63.221	ENSTTRG00000003343	PSPC1	89	70.000	Tursiops_truncatus
ENSORLG00000004232	-	63	76.025	ENSUAMG00000012309	PSPC1	82	81.469	Ursus_americanus
ENSORLG00000004232	-	92	62.035	ENSUMAG00000013993	PSPC1	91	78.704	Ursus_maritimus
ENSORLG00000004232	-	75	63.420	ENSVPAG00000010029	PSPC1	100	70.098	Vicugna_pacos
ENSORLG00000004232	-	87	64.389	ENSVVUG00000006414	PSPC1	84	79.012	Vulpes_vulpes
ENSORLG00000004232	-	76	74.300	ENSXCOG00000017438	pspc1	93	78.372	Xiphophorus_couchianus
ENSORLG00000004232	-	76	79.135	ENSXMAG00000007929	pspc1	93	78.880	Xiphophorus_maculatus