EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000004297 (Gene tree)
Gene ID: 101156720
Gene Symbol: r3hdm1
Alias: -
Full Name: R3H domain-containing protein 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 34034 bases
Position: chr2:17646808-17680841
Accession: 101156720
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000005383	R3H	PF01424.22	6.7e-13	1	1
ENSORLP00000040104	R3H	PF01424.22	7.3e-13	1	1
ENSORLP00000029567	R3H	PF01424.22	7.4e-13	1	1
ENSORLP00000043304	R3H	PF01424.22	7.8e-13	1	1
ENSORLP00000036844	R3H	PF01424.22	7.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000037986	-	4540	XM_023965434	ENSORLP00000036844	996 (aa)	XP_023821202	-
ENSORLT00000005384	-	2954	-	ENSORLP00000005383	923 (aa)	-	H2LHC5
ENSORLT00000037227	-	4522	XM_023965445	ENSORLP00000043304	990 (aa)	XP_023821213	-
ENSORLT00000039438	-	3083	XM_023965452	ENSORLP00000029567	966 (aa)	XP_023821220	-
ENSORLT00000041166	-	3065	XM_023965462	ENSORLP00000040104	960 (aa)	XP_023821230	-

Gene Model

Click here to download ENSORLG00000004297's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000004297's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000004297	r3hdm1	77	62.094	ENSORLG00000005502	r3hdm2	72	56.637

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000004297	r3hdm1	90	60.638	ENSG00000048991	R3HDM1	97	65.125	Homo_sapiens
ENSORLG00000004297	r3hdm1	100	76.820	ENSAPOG00000020850	r3hdm1	96	76.533	Acanthochromis_polyacanthus
ENSORLG00000004297	r3hdm1	94	47.764	ENSAMEG00000014886	R3HDM1	89	45.127	Ailuropoda_melanoleuca
ENSORLG00000004297	r3hdm1	100	76.409	ENSAOCG00000005192	r3hdm1	100	76.218	Amphiprion_ocellaris
ENSORLG00000004297	r3hdm1	100	75.876	ENSAPEG00000016108	r3hdm1	100	75.670	Amphiprion_percula
ENSORLG00000004297	r3hdm1	100	73.728	ENSATEG00000000232	r3hdm1	100	74.143	Anabas_testudineus
ENSORLG00000004297	r3hdm1	99	44.956	ENSAPLG00000015231	R3HDM1	89	44.912	Anas_platyrhynchos
ENSORLG00000004297	r3hdm1	99	46.965	ENSACAG00000001676	R3HDM1	89	46.592	Anolis_carolinensis
ENSORLG00000004297	r3hdm1	90	60.904	ENSANAG00000035334	R3HDM1	87	60.904	Aotus_nancymaae
ENSORLG00000004297	r3hdm1	100	75.364	ENSACLG00000027282	r3hdm1	100	74.740	Astatotilapia_calliptera
ENSORLG00000004297	r3hdm1	86	72.697	ENSAMXG00000012861	R3HDM1	89	58.354	Astyanax_mexicanus
ENSORLG00000004297	r3hdm1	87	70.382	ENSAMXG00000003536	r3hdm1	81	68.497	Astyanax_mexicanus
ENSORLG00000004297	r3hdm1	99	46.452	ENSBTAG00000013302	R3HDM1	85	53.448	Bos_taurus
ENSORLG00000004297	r3hdm1	90	60.638	ENSCJAG00000011718	R3HDM1	87	60.638	Callithrix_jacchus
ENSORLG00000004297	r3hdm1	94	47.511	ENSCAFG00000005075	R3HDM1	89	44.477	Canis_familiaris
ENSORLG00000004297	r3hdm1	99	46.097	ENSCAFG00020016119	R3HDM1	92	57.418	Canis_lupus_dingo
ENSORLG00000004297	r3hdm1	99	46.635	ENSCHIG00000020851	R3HDM1	89	45.728	Capra_hircus
ENSORLG00000004297	r3hdm1	99	45.779	ENSCPOG00000012784	R3HDM1	100	61.433	Cavia_porcellus
ENSORLG00000004297	r3hdm1	90	60.106	ENSCCAG00000027199	R3HDM1	87	60.106	Cebus_capucinus
ENSORLG00000004297	r3hdm1	92	62.319	ENSCATG00000023642	R3HDM1	87	60.372	Cercocebus_atys
ENSORLG00000004297	r3hdm1	99	45.548	ENSCLAG00000007962	R3HDM1	100	63.481	Chinchilla_lanigera
ENSORLG00000004297	r3hdm1	99	45.787	ENSCSAG00000016356	R3HDM1	89	45.880	Chlorocebus_sabaeus
ENSORLG00000004297	r3hdm1	79	65.116	ENSCHOG00000013638	R3HDM1	63	65.116	Choloepus_hoffmanni
ENSORLG00000004297	r3hdm1	82	69.424	ENSCPBG00000009645	R3HDM1	86	69.424	Chrysemys_picta_bellii
ENSORLG00000004297	r3hdm1	90	60.372	ENSCANG00000034748	R3HDM1	87	60.372	Colobus_angolensis_palliatus
ENSORLG00000004297	r3hdm1	99	46.754	ENSCGRG00001012357	R3hdm1	86	45.845	Cricetulus_griseus_chok1gshd
ENSORLG00000004297	r3hdm1	99	46.754	ENSCGRG00000012080	R3hdm1	100	64.846	Cricetulus_griseus_crigri
ENSORLG00000004297	r3hdm1	100	62.535	ENSCSEG00000008944	r3hdm1	100	62.908	Cynoglossus_semilaevis
ENSORLG00000004297	r3hdm1	100	73.892	ENSCVAG00000007582	r3hdm1	100	73.314	Cyprinodon_variegatus
ENSORLG00000004297	r3hdm1	97	44.898	ENSDNOG00000000771	R3HDM1	80	44.268	Dasypus_novemcinctus
ENSORLG00000004297	r3hdm1	85	61.965	ENSETEG00000013606	R3HDM1	84	56.719	Echinops_telfairi
ENSORLG00000004297	r3hdm1	50	44.000	ENSEBUG00000014746	arpp21	99	39.642	Eptatretus_burgeri
ENSORLG00000004297	r3hdm1	86	67.419	ENSEASG00005007392	R3HDM1	88	60.382	Equus_asinus_asinus
ENSORLG00000004297	r3hdm1	86	67.419	ENSECAG00000019114	R3HDM1	88	60.382	Equus_caballus
ENSORLG00000004297	r3hdm1	94	47.035	ENSELUG00000014413	r3hdm1	83	51.877	Esox_lucius
ENSORLG00000004297	r3hdm1	96	50.488	ENSELUG00000004909	R3HDM1	86	50.975	Esox_lucius
ENSORLG00000004297	r3hdm1	86	67.419	ENSFCAG00000027113	R3HDM1	88	59.905	Felis_catus
ENSORLG00000004297	r3hdm1	84	49.162	ENSFALG00000013731	R3HDM1	90	44.464	Ficedula_albicollis
ENSORLG00000004297	r3hdm1	99	45.775	ENSFDAG00000016478	R3HDM1	100	64.505	Fukomys_damarensis
ENSORLG00000004297	r3hdm1	100	73.684	ENSFHEG00000018713	r3hdm1	100	73.014	Fundulus_heteroclitus
ENSORLG00000004297	r3hdm1	62	68.848	ENSGMOG00000006042	-	79	55.773	Gadus_morhua
ENSORLG00000004297	r3hdm1	80	66.118	ENSGALG00000012246	R3HDM1	84	65.461	Gallus_gallus
ENSORLG00000004297	r3hdm1	100	71.830	ENSGAFG00000006203	r3hdm1	100	72.037	Gambusia_affinis
ENSORLG00000004297	r3hdm1	95	72.883	ENSGACG00000014925	r3hdm1	95	72.553	Gasterosteus_aculeatus
ENSORLG00000004297	r3hdm1	86	65.161	ENSGAGG00000007840	R3HDM1	84	58.578	Gopherus_agassizii
ENSORLG00000004297	r3hdm1	90	60.638	ENSGGOG00000008156	R3HDM1	87	60.638	Gorilla_gorilla
ENSORLG00000004297	r3hdm1	51	81.871	ENSHBUG00000015737	R3HDM1	92	82.046	Haplochromis_burtoni
ENSORLG00000004297	r3hdm1	99	46.742	ENSHGLG00000015718	R3HDM1	100	64.041	Heterocephalus_glaber_female
ENSORLG00000004297	r3hdm1	99	46.648	ENSHGLG00100003184	-	100	64.384	Heterocephalus_glaber_male
ENSORLG00000004297	r3hdm1	99	38.558	ENSHGLG00100015374	-	91	38.470	Heterocephalus_glaber_male
ENSORLG00000004297	r3hdm1	100	62.578	ENSHCOG00000013366	r3hdm1	100	62.578	Hippocampus_comes
ENSORLG00000004297	r3hdm1	86	69.811	ENSIPUG00000001676	R3HDM1	100	58.998	Ictalurus_punctatus
ENSORLG00000004297	r3hdm1	83	70.100	ENSIPUG00000013629	r3hdm1	81	69.103	Ictalurus_punctatus
ENSORLG00000004297	r3hdm1	99	45.837	ENSSTOG00000007572	R3HDM1	100	64.846	Ictidomys_tridecemlineatus
ENSORLG00000004297	r3hdm1	90	63.202	ENSLACG00000005334	R3HDM1	87	49.197	Latimeria_chalumnae
ENSORLG00000004297	r3hdm1	99	49.079	ENSLOCG00000001641	r3hdm1	90	48.221	Lepisosteus_oculatus
ENSORLG00000004297	r3hdm1	99	46.060	ENSLAFG00000009065	R3HDM1	85	64.773	Loxodonta_africana
ENSORLG00000004297	r3hdm1	84	67.742	ENSMFAG00000030331	R3HDM1	87	60.638	Macaca_fascicularis
ENSORLG00000004297	r3hdm1	90	60.638	ENSMMUG00000009844	R3HDM1	87	60.638	Macaca_mulatta
ENSORLG00000004297	r3hdm1	84	67.742	ENSMNEG00000027793	R3HDM1	87	60.638	Macaca_nemestrina
ENSORLG00000004297	r3hdm1	90	60.638	ENSMLEG00000043189	R3HDM1	87	60.638	Mandrillus_leucophaeus
ENSORLG00000004297	r3hdm1	100	75.313	ENSMAMG00000004532	r3hdm1	100	74.928	Mastacembelus_armatus
ENSORLG00000004297	r3hdm1	100	75.336	ENSMZEG00005003157	r3hdm1	100	74.760	Maylandia_zebra
ENSORLG00000004297	r3hdm1	88	54.302	ENSMGAG00000012461	R3HDM1	88	44.652	Meleagris_gallopavo
ENSORLG00000004297	r3hdm1	99	46.717	ENSMAUG00000010315	R3hdm1	100	64.846	Mesocricetus_auratus
ENSORLG00000004297	r3hdm1	90	60.904	ENSMICG00000042655	-	92	60.904	Microcebus_murinus
ENSORLG00000004297	r3hdm1	90	61.170	ENSMICG00000005900	-	87	61.170	Microcebus_murinus
ENSORLG00000004297	r3hdm1	50	58.317	ENSMOCG00000019833	-	100	64.505	Microtus_ochrogaster
ENSORLG00000004297	r3hdm1	99	44.771	ENSMODG00000000923	R3HDM1	96	44.312	Monodelphis_domestica
ENSORLG00000004297	r3hdm1	100	73.740	ENSMALG00000009000	r3hdm1	90	73.256	Monopterus_albus
ENSORLG00000004297	r3hdm1	99	46.698	MGP_CAROLIEiJ_G0014543	R3hdm1	100	65.188	Mus_caroli
ENSORLG00000004297	r3hdm1	99	46.698	ENSMUSG00000056211	R3hdm1	100	65.188	Mus_musculus
ENSORLG00000004297	r3hdm1	99	46.459	MGP_PahariEiJ_G0027779	R3hdm1	100	65.188	Mus_pahari
ENSORLG00000004297	r3hdm1	99	46.698	MGP_SPRETEiJ_G0015350	R3hdm1	100	65.188	Mus_spretus
ENSORLG00000004297	r3hdm1	94	47.432	ENSMPUG00000002412	R3HDM1	89	44.229	Mustela_putorius_furo
ENSORLG00000004297	r3hdm1	99	44.368	ENSMLUG00000013824	R3HDM1	89	43.647	Myotis_lucifugus
ENSORLG00000004297	r3hdm1	90	60.638	ENSNLEG00000008622	R3HDM1	87	60.638	Nomascus_leucogenys
ENSORLG00000004297	r3hdm1	87	45.192	ENSMEUG00000011784	R3HDM1	85	45.385	Notamacropus_eugenii
ENSORLG00000004297	r3hdm1	99	45.164	ENSODEG00000008607	R3HDM1	100	64.164	Octodon_degus
ENSORLG00000004297	r3hdm1	94	74.864	ENSONIG00000012017	r3hdm1	89	71.372	Oreochromis_niloticus
ENSORLG00000004297	r3hdm1	94	46.988	ENSOANG00000007987	R3HDM1	79	47.426	Ornithorhynchus_anatinus
ENSORLG00000004297	r3hdm1	94	47.541	ENSOCUG00000017366	R3HDM1	97	43.961	Oryctolagus_cuniculus
ENSORLG00000004297	r3hdm1	100	98.397	ENSORLG00015017355	r3hdm1	100	98.397	Oryzias_latipes_hsok
ENSORLG00000004297	r3hdm1	53	90.262	ENSOMEG00000003882	-	99	90.075	Oryzias_melastigma
ENSORLG00000004297	r3hdm1	94	47.697	ENSOGAG00000003136	R3HDM1	89	44.882	Otolemur_garnettii
ENSORLG00000004297	r3hdm1	99	44.708	ENSOARG00000010788	R3HDM1	89	43.926	Ovis_aries
ENSORLG00000004297	r3hdm1	90	60.638	ENSPPAG00000027858	R3HDM1	87	60.638	Pan_paniscus
ENSORLG00000004297	r3hdm1	90	60.372	ENSPPRG00000002626	R3HDM1	87	60.372	Panthera_pardus
ENSORLG00000004297	r3hdm1	90	60.638	ENSPTIG00000016581	R3HDM1	87	60.638	Panthera_tigris_altaica
ENSORLG00000004297	r3hdm1	90	60.638	ENSPTRG00000012494	R3HDM1	87	60.638	Pan_troglodytes
ENSORLG00000004297	r3hdm1	90	60.638	ENSPANG00000026448	R3HDM1	87	60.638	Papio_anubis
ENSORLG00000004297	r3hdm1	50	58.761	ENSPKIG00000011224	R3HDM1	83	63.636	Paramormyrops_kingsleyae
ENSORLG00000004297	r3hdm1	87	70.358	ENSPKIG00000004328	r3hdm1	78	70.199	Paramormyrops_kingsleyae
ENSORLG00000004297	r3hdm1	94	48.177	ENSPSIG00000012915	R3HDM1	78	47.755	Pelodiscus_sinensis
ENSORLG00000004297	r3hdm1	50	65.638	ENSPMGG00000011264	-	86	72.816	Periophthalmus_magnuspinnatus
ENSORLG00000004297	r3hdm1	99	46.748	ENSPEMG00000015187	R3hdm1	100	64.846	Peromyscus_maniculatus_bairdii
ENSORLG00000004297	r3hdm1	82	39.953	ENSPMAG00000003369	-	91	39.007	Petromyzon_marinus
ENSORLG00000004297	r3hdm1	85	66.129	ENSPCIG00000002491	R3HDM1	88	58.195	Phascolarctos_cinereus
ENSORLG00000004297	r3hdm1	100	72.605	ENSPFOG00000015036	r3hdm1	100	71.839	Poecilia_formosa
ENSORLG00000004297	r3hdm1	100	72.257	ENSPLAG00000018042	r3hdm1	100	71.325	Poecilia_latipinna
ENSORLG00000004297	r3hdm1	100	72.228	ENSPMEG00000023947	r3hdm1	100	71.399	Poecilia_mexicana
ENSORLG00000004297	r3hdm1	100	71.689	ENSPREG00000007902	r3hdm1	100	71.224	Poecilia_reticulata
ENSORLG00000004297	r3hdm1	94	46.347	ENSPPYG00000012815	R3HDM1	79	46.645	Pongo_abelii
ENSORLG00000004297	r3hdm1	80	69.298	ENSPCAG00000006208	R3HDM1	74	53.571	Procavia_capensis
ENSORLG00000004297	r3hdm1	90	57.487	ENSPCOG00000012698	R3HDM1	87	57.487	Propithecus_coquereli
ENSORLG00000004297	r3hdm1	73	45.070	ENSPVAG00000006098	R3HDM1	89	38.469	Pteropus_vampyrus
ENSORLG00000004297	r3hdm1	83	72.368	ENSPNAG00000013952	r3hdm1	82	69.318	Pygocentrus_nattereri
ENSORLG00000004297	r3hdm1	54	54.545	ENSPNAG00000004162	arpp21	81	48.515	Pygocentrus_nattereri
ENSORLG00000004297	r3hdm1	84	71.382	ENSPNAG00000005436	R3HDM1	87	66.269	Pygocentrus_nattereri
ENSORLG00000004297	r3hdm1	99	46.931	ENSRNOG00000004099	R3hdm1	89	45.951	Rattus_norvegicus
ENSORLG00000004297	r3hdm1	81	70.504	ENSRBIG00000033317	R3HDM1	86	70.504	Rhinopithecus_bieti
ENSORLG00000004297	r3hdm1	90	60.638	ENSRROG00000034534	R3HDM1	87	60.638	Rhinopithecus_roxellana
ENSORLG00000004297	r3hdm1	90	60.800	ENSSBOG00000020389	R3HDM1	87	60.800	Saimiri_boliviensis_boliviensis
ENSORLG00000004297	r3hdm1	99	45.612	ENSSHAG00000016999	R3HDM1	88	45.714	Sarcophilus_harrisii
ENSORLG00000004297	r3hdm1	90	73.422	ENSSFOG00015014134	r3hdm1	78	72.425	Scleropages_formosus
ENSORLG00000004297	r3hdm1	100	46.218	ENSSFOG00015019851	-	94	57.396	Scleropages_formosus
ENSORLG00000004297	r3hdm1	100	71.109	ENSSMAG00000001669	r3hdm1	90	70.397	Scophthalmus_maximus
ENSORLG00000004297	r3hdm1	100	74.335	ENSSDUG00000010749	r3hdm1	100	74.131	Seriola_dumerili
ENSORLG00000004297	r3hdm1	100	73.180	ENSSLDG00000004499	r3hdm1	90	73.180	Seriola_lalandi_dorsalis
ENSORLG00000004297	r3hdm1	53	53.420	ENSSARG00000000352	-	50	53.420	Sorex_araneus
ENSORLG00000004297	r3hdm1	99	45.033	ENSSPUG00000004167	R3HDM1	88	44.553	Sphenodon_punctatus
ENSORLG00000004297	r3hdm1	100	76.278	ENSSPAG00000004648	r3hdm1	100	75.767	Stegastes_partitus
ENSORLG00000004297	r3hdm1	91	59.409	ENSSSCG00000015692	R3HDM1	87	59.409	Sus_scrofa
ENSORLG00000004297	r3hdm1	96	46.418	ENSTGUG00000011750	R3HDM1	89	46.125	Taeniopygia_guttata
ENSORLG00000004297	r3hdm1	100	68.163	ENSTRUG00000011654	r3hdm1	99	67.449	Takifugu_rubripes
ENSORLG00000004297	r3hdm1	98	63.088	ENSTNIG00000010362	r3hdm1	99	62.574	Tetraodon_nigroviridis
ENSORLG00000004297	r3hdm1	86	47.146	ENSTTRG00000003935	R3HDM1	77	46.765	Tursiops_truncatus
ENSORLG00000004297	r3hdm1	69	61.702	ENSUAMG00000024806	R3HDM1	92	57.088	Ursus_americanus
ENSORLG00000004297	r3hdm1	90	60.904	ENSUMAG00000005552	R3HDM1	87	60.904	Ursus_maritimus
ENSORLG00000004297	r3hdm1	86	47.381	ENSVPAG00000007333	R3HDM1	73	46.968	Vicugna_pacos
ENSORLG00000004297	r3hdm1	91	61.067	ENSVVUG00000006457	R3HDM1	88	61.067	Vulpes_vulpes
ENSORLG00000004297	r3hdm1	93	45.485	ENSXETG00000019330	r3hdm1	87	45.815	Xenopus_tropicalis
ENSORLG00000004297	r3hdm1	77	71.583	ENSXCOG00000017448	r3hdm1	92	71.177	Xiphophorus_couchianus
ENSORLG00000004297	r3hdm1	100	72.543	ENSXMAG00000007885	r3hdm1	100	72.543	Xiphophorus_maculatus