EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000004384 (Gene tree)
Gene ID: 101172836
Gene Symbol: scaf4a
Alias: -
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 36438 bases
Position: chr14:10918094-10954531
Accession: 101172836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000005492	RRM_1	PF00076.22	1.4e-07	1	1
ENSORLP00000033266	RRM_1	PF00076.22	1.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000005493	-	5782	XM_011483331	ENSORLP00000005492	1154 (aa)	XP_011481633	H2LHM8
ENSORLT00000028332	-	6934	-	ENSORLP00000033266	1323 (aa)	-	-

Gene Model

Click here to download ENSORLG00000004384's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000004384's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000004384	scaf4a	84	79.893	ENSAPOG00000002946	scaf4a	100	71.851	Acanthochromis_polyacanthus
ENSORLG00000004384	scaf4a	64	80.134	ENSAOCG00000000615	scaf4a	100	72.466	Amphiprion_ocellaris
ENSORLG00000004384	scaf4a	64	80.000	ENSAPEG00000021229	scaf4a	100	72.673	Amphiprion_percula
ENSORLG00000004384	scaf4a	89	56.767	ENSAMXG00000008585	scaf4a	92	59.446	Astyanax_mexicanus
ENSORLG00000004384	scaf4a	52	54.962	ENSCAFG00020026019	SCAF4	92	54.607	Canis_lupus_dingo
ENSORLG00000004384	scaf4a	100	63.993	ENSCSEG00000019549	scaf4a	99	63.074	Cynoglossus_semilaevis
ENSORLG00000004384	scaf4a	86	51.801	ENSDARG00000077093	scaf4a	69	57.649	Danio_rerio
ENSORLG00000004384	scaf4a	66	74.936	ENSFHEG00000017866	scaf4a	63	76.455	Fundulus_heteroclitus
ENSORLG00000004384	scaf4a	65	77.720	ENSGAFG00000019460	scaf4a	85	77.734	Gambusia_affinis
ENSORLG00000004384	scaf4a	75	65.408	ENSGACG00000020580	scaf4a	86	64.343	Gasterosteus_aculeatus
ENSORLG00000004384	scaf4a	100	69.631	ENSHBUG00000007920	scaf4a	100	69.218	Haplochromis_burtoni
ENSORLG00000004384	scaf4a	55	83.673	ENSHCOG00000006849	scaf4a	56	88.235	Hippocampus_comes
ENSORLG00000004384	scaf4a	62	58.675	ENSIPUG00000011285	scaf4	75	73.077	Ictalurus_punctatus
ENSORLG00000004384	scaf4a	98	64.767	ENSLBEG00000014675	scaf4a	100	65.976	Labrus_bergylta
ENSORLG00000004384	scaf4a	80	50.742	ENSLOCG00000009162	scaf4a	65	61.003	Lepisosteus_oculatus
ENSORLG00000004384	scaf4a	53	61.196	ENSLAFG00000010710	SCAF4	52	65.085	Loxodonta_africana
ENSORLG00000004384	scaf4a	74	69.570	ENSMAMG00000013223	scaf4a	100	68.126	Mastacembelus_armatus
ENSORLG00000004384	scaf4a	99	69.492	ENSMZEG00005024349	scaf4a	99	70.085	Maylandia_zebra
ENSORLG00000004384	scaf4a	76	77.397	ENSMALG00000013825	scaf4a	91	76.444	Monopterus_albus
ENSORLG00000004384	scaf4a	100	69.732	ENSONIG00000004687	scaf4a	100	69.302	Oreochromis_niloticus
ENSORLG00000004384	scaf4a	100	98.866	ENSORLG00020011857	scaf4a	100	98.866	Oryzias_latipes_hni
ENSORLG00000004384	scaf4a	100	97.666	ENSORLG00015017880	scaf4a	100	97.666	Oryzias_latipes_hsok
ENSORLG00000004384	scaf4a	99	90.878	ENSOMEG00000014482	scaf4a	99	90.878	Oryzias_melastigma
ENSORLG00000004384	scaf4a	59	62.973	ENSPKIG00000022408	scaf4a	99	62.331	Paramormyrops_kingsleyae
ENSORLG00000004384	scaf4a	59	57.833	ENSPMGG00000016741	scaf4a	60	58.088	Periophthalmus_magnuspinnatus
ENSORLG00000004384	scaf4a	85	77.793	ENSPFOG00000017156	scaf4a	100	74.774	Poecilia_formosa
ENSORLG00000004384	scaf4a	67	78.278	ENSPLAG00000001972	scaf4a	94	78.646	Poecilia_latipinna
ENSORLG00000004384	scaf4a	74	58.717	ENSPNAG00000016892	scaf4a	73	61.557	Pygocentrus_nattereri
ENSORLG00000004384	scaf4a	52	46.799	ENSRNOG00000002104	Scaf4	57	65.116	Rattus_norvegicus
ENSORLG00000004384	scaf4a	87	44.968	ENSSFOG00015006338	scaf4a	67	53.182	Scleropages_formosus
ENSORLG00000004384	scaf4a	64	75.432	ENSSMAG00000017901	scaf4a	99	66.391	Scophthalmus_maximus
ENSORLG00000004384	scaf4a	100	72.498	ENSSDUG00000012918	scaf4a	100	72.498	Seriola_dumerili
ENSORLG00000004384	scaf4a	100	72.582	ENSSLDG00000021671	scaf4a	100	70.672	Seriola_lalandi_dorsalis
ENSORLG00000004384	scaf4a	75	64.479	ENSXETG00000007351	scaf4	53	63.291	Xenopus_tropicalis