EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000004397 (Gene tree)
Gene ID: 101159890
Gene Symbol: fip1l1b
Alias: -
Full Name: pre-mRNA 3'-end-processing factor FIP1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 19102 bases
Position: chr1:11134324-11153425
Accession: 101159890
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000005517	Fip1	PF05182.13	2.4e-24	1	1
ENSORLP00000033814	Fip1	PF05182.13	2.6e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000005518	-	2620	XM_004065716	ENSORLP00000005517	538 (aa)	XP_004065764	H2LHQ3
ENSORLT00000039759	-	3083	-	ENSORLP00000033814	567 (aa)	-	-

Gene Model

Click here to download ENSORLG00000004397's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000004397's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000004397	fip1l1b	70	90.625	ENSACIG00000001454	fip1l1b	96	90.625	Amphilophus_citrinellus
ENSORLG00000004397	fip1l1b	100	84.767	ENSAOCG00000021043	fip1l1b	100	86.022	Amphiprion_ocellaris
ENSORLG00000004397	fip1l1b	100	84.767	ENSAPEG00000022229	fip1l1b	100	86.022	Amphiprion_percula
ENSORLG00000004397	fip1l1b	100	88.889	ENSATEG00000021757	fip1l1b	100	88.889	Anabas_testudineus
ENSORLG00000004397	fip1l1b	70	51.639	ENSAPLG00000008548	-	85	51.210	Anas_platyrhynchos
ENSORLG00000004397	fip1l1b	89	54.446	ENSAPLG00000003042	-	95	55.172	Anas_platyrhynchos
ENSORLG00000004397	fip1l1b	77	63.636	ENSACAG00000010556	-	89	53.686	Anolis_carolinensis
ENSORLG00000004397	fip1l1b	100	89.054	ENSACLG00000010418	fip1l1b	100	90.167	Astatotilapia_calliptera
ENSORLG00000004397	fip1l1b	59	43.519	ENSAMXG00000031045	fip1l1a	77	41.971	Astyanax_mexicanus
ENSORLG00000004397	fip1l1b	56	66.563	ENSAMXG00000011126	fip1l1b	90	70.629	Astyanax_mexicanus
ENSORLG00000004397	fip1l1b	99	57.636	ENSBTAG00000020653	FIP1L1	99	62.000	Bos_taurus
ENSORLG00000004397	fip1l1b	99	55.323	ENSCHIG00000025903	-	99	59.686	Capra_hircus
ENSORLG00000004397	fip1l1b	83	54.386	ENSCAPG00000009569	-	77	68.342	Cavia_aperea
ENSORLG00000004397	fip1l1b	83	61.184	ENSCPOG00000010770	-	85	66.079	Cavia_porcellus
ENSORLG00000004397	fip1l1b	99	60.000	ENSCPBG00000025019	-	97	60.644	Chrysemys_picta_bellii
ENSORLG00000004397	fip1l1b	99	55.495	ENSCGRG00001018568	Fip1l1	99	60.180	Cricetulus_griseus_chok1gshd
ENSORLG00000004397	fip1l1b	99	55.495	ENSCGRG00000000208	Fip1l1	99	60.180	Cricetulus_griseus_crigri
ENSORLG00000004397	fip1l1b	100	86.137	ENSCSEG00000006583	fip1l1b	100	86.137	Cynoglossus_semilaevis
ENSORLG00000004397	fip1l1b	100	86.900	ENSCVAG00000023435	fip1l1b	100	86.900	Cyprinodon_variegatus
ENSORLG00000004397	fip1l1b	100	66.321	ENSDARG00000070431	fip1l1b	100	67.876	Danio_rerio
ENSORLG00000004397	fip1l1b	80	48.697	ENSETEG00000018271	-	72	64.052	Echinops_telfairi
ENSORLG00000004397	fip1l1b	83	58.333	ENSEASG00005019566	-	99	58.834	Equus_asinus_asinus
ENSORLG00000004397	fip1l1b	53	54.360	ENSEEUG00000004965	-	59	54.678	Erinaceus_europaeus
ENSORLG00000004397	fip1l1b	99	53.165	ENSELUG00000004607	fip1l1a	99	54.128	Esox_lucius
ENSORLG00000004397	fip1l1b	67	69.725	ENSELUG00000001280	fip1l1b	74	69.585	Esox_lucius
ENSORLG00000004397	fip1l1b	100	85.818	ENSFHEG00000003843	fip1l1b	100	85.818	Fundulus_heteroclitus
ENSORLG00000004397	fip1l1b	100	68.476	ENSGMOG00000004913	fip1l1b	100	69.002	Gadus_morhua
ENSORLG00000004397	fip1l1b	99	60.326	ENSGALG00000013943	-	99	60.870	Gallus_gallus
ENSORLG00000004397	fip1l1b	100	85.353	ENSGAFG00000008253	fip1l1b	100	85.353	Gambusia_affinis
ENSORLG00000004397	fip1l1b	100	70.500	ENSGACG00000015946	fip1l1b	100	70.500	Gasterosteus_aculeatus
ENSORLG00000004397	fip1l1b	50	53.957	ENSGAGG00000017677	-	57	62.019	Gopherus_agassizii
ENSORLG00000004397	fip1l1b	99	60.000	ENSGAGG00000009763	-	99	59.582	Gopherus_agassizii
ENSORLG00000004397	fip1l1b	100	89.054	ENSHBUG00000013978	fip1l1b	100	90.167	Haplochromis_burtoni
ENSORLG00000004397	fip1l1b	99	81.618	ENSHCOG00000015834	fip1l1b	99	84.007	Hippocampus_comes
ENSORLG00000004397	fip1l1b	100	57.143	ENSIPUG00000022454	fip1l1b	98	69.474	Ictalurus_punctatus
ENSORLG00000004397	fip1l1b	100	85.978	ENSKMAG00000021938	fip1l1b	100	85.978	Kryptolebias_marmoratus
ENSORLG00000004397	fip1l1b	100	83.005	ENSLBEG00000028819	fip1l1b	100	83.005	Labrus_bergylta
ENSORLG00000004397	fip1l1b	96	61.670	ENSLACG00000011991	fip1l1a	96	62.477	Latimeria_chalumnae
ENSORLG00000004397	fip1l1b	99	61.872	ENSLOCG00000014127	fip1l1b	99	63.415	Lepisosteus_oculatus
ENSORLG00000004397	fip1l1b	100	86.322	ENSMAMG00000004535	fip1l1b	100	86.322	Mastacembelus_armatus
ENSORLG00000004397	fip1l1b	100	88.868	ENSMZEG00005023828	fip1l1b	100	89.981	Maylandia_zebra
ENSORLG00000004397	fip1l1b	86	52.209	ENSMAUG00000010526	Fip1l1	99	57.522	Mesocricetus_auratus
ENSORLG00000004397	fip1l1b	99	53.860	ENSMOCG00000008020	Fip1l1	99	58.739	Microtus_ochrogaster
ENSORLG00000004397	fip1l1b	81	96.154	ENSMMOG00000008262	fip1l1b	92	96.154	Mola_mola
ENSORLG00000004397	fip1l1b	75	53.030	ENSMODG00000020654	-	93	52.756	Monodelphis_domestica
ENSORLG00000004397	fip1l1b	100	66.426	ENSMALG00000000838	fip1l1b	100	59.025	Monopterus_albus
ENSORLG00000004397	fip1l1b	83	60.480	MGP_CAROLIEiJ_G0027304	Fip1l1	99	60.541	Mus_caroli
ENSORLG00000004397	fip1l1b	83	60.480	ENSMUSG00000029227	Fip1l1	99	60.541	Mus_musculus
ENSORLG00000004397	fip1l1b	83	60.480	MGP_PahariEiJ_G0017085	Fip1l1	99	60.541	Mus_pahari
ENSORLG00000004397	fip1l1b	83	60.480	MGP_SPRETEiJ_G0028299	Fip1l1	99	60.541	Mus_spretus
ENSORLG00000004397	fip1l1b	83	60.965	ENSNGAG00000008849	Fip1l1	99	60.579	Nannospalax_galili
ENSORLG00000004397	fip1l1b	100	86.176	ENSNBRG00000017832	fip1l1b	100	87.253	Neolamprologus_brichardi
ENSORLG00000004397	fip1l1b	100	85.637	ENSONIG00000008785	fip1l1b	100	86.715	Oreochromis_niloticus
ENSORLG00000004397	fip1l1b	83	51.048	ENSOANG00000003384	-	90	49.904	Ornithorhynchus_anatinus
ENSORLG00000004397	fip1l1b	100	99.628	ENSORLG00020008716	fip1l1b	100	99.628	Oryzias_latipes_hni
ENSORLG00000004397	fip1l1b	100	99.118	ENSORLG00015006736	fip1l1b	100	99.118	Oryzias_latipes_hsok
ENSORLG00000004397	fip1l1b	100	64.413	ENSOMEG00000015730	fip1l1b	97	92.308	Oryzias_melastigma
ENSORLG00000004397	fip1l1b	83	55.625	ENSOARG00000018767	-	86	60.669	Ovis_aries
ENSORLG00000004397	fip1l1b	50	48.571	ENSPKIG00000014162	-	97	42.729	Paramormyrops_kingsleyae
ENSORLG00000004397	fip1l1b	100	70.160	ENSPMGG00000017028	fip1l1b	100	69.123	Periophthalmus_magnuspinnatus
ENSORLG00000004397	fip1l1b	86	56.879	ENSPEMG00000002025	Fip1l1	99	59.537	Peromyscus_maniculatus_bairdii
ENSORLG00000004397	fip1l1b	51	55.663	ENSPCIG00000019318	-	97	55.340	Phascolarctos_cinereus
ENSORLG00000004397	fip1l1b	100	85.299	ENSPFOG00000014745	fip1l1b	100	85.299	Poecilia_formosa
ENSORLG00000004397	fip1l1b	100	83.152	ENSPLAG00000010954	fip1l1b	100	85.870	Poecilia_latipinna
ENSORLG00000004397	fip1l1b	100	85.481	ENSPMEG00000019187	fip1l1b	100	85.481	Poecilia_mexicana
ENSORLG00000004397	fip1l1b	83	68.610	ENSPREG00000012535	fip1l1b	90	68.456	Poecilia_reticulata
ENSORLG00000004397	fip1l1b	67	84.960	ENSPNYG00000015976	fip1l1b	99	86.544	Pundamilia_nyererei
ENSORLG00000004397	fip1l1b	56	66.875	ENSPNAG00000015341	fip1l1b	79	61.773	Pygocentrus_nattereri
ENSORLG00000004397	fip1l1b	52	44.330	ENSPNAG00000007456	-	52	44.599	Pygocentrus_nattereri
ENSORLG00000004397	fip1l1b	62	44.776	ENSPNAG00000009853	fip1l1a	58	52.427	Pygocentrus_nattereri
ENSORLG00000004397	fip1l1b	83	58.079	ENSRNOG00000002275	Fip1l1	99	58.919	Rattus_norvegicus
ENSORLG00000004397	fip1l1b	83	52.157	ENSSHAG00000015789	-	86	57.283	Sarcophilus_harrisii
ENSORLG00000004397	fip1l1b	91	59.763	ENSSFOG00015017653	fip1l1b	99	59.295	Scleropages_formosus
ENSORLG00000004397	fip1l1b	52	50.000	ENSSFOG00015010948	-	57	55.140	Scleropages_formosus
ENSORLG00000004397	fip1l1b	100	87.616	ENSSMAG00000013444	fip1l1b	100	87.616	Scophthalmus_maximus
ENSORLG00000004397	fip1l1b	100	89.815	ENSSDUG00000004117	fip1l1b	100	89.815	Seriola_dumerili
ENSORLG00000004397	fip1l1b	100	89.259	ENSSLDG00000024099	fip1l1b	100	89.259	Seriola_lalandi_dorsalis
ENSORLG00000004397	fip1l1b	69	54.435	ENSSARG00000001973	-	89	58.763	Sorex_araneus
ENSORLG00000004397	fip1l1b	52	58.099	ENSSPUG00000017328	-	92	58.451	Sphenodon_punctatus
ENSORLG00000004397	fip1l1b	100	85.125	ENSSPAG00000017564	fip1l1b	100	86.201	Stegastes_partitus
ENSORLG00000004397	fip1l1b	100	83.978	ENSTRUG00000001545	fip1l1b	100	84.346	Takifugu_rubripes
ENSORLG00000004397	fip1l1b	100	74.916	ENSTNIG00000004104	fip1l1b	100	74.916	Tetraodon_nigroviridis
ENSORLG00000004397	fip1l1b	83	55.126	ENSUMAG00000002758	-	95	55.200	Ursus_maritimus
ENSORLG00000004397	fip1l1b	69	54.435	ENSVPAG00000011574	-	76	58.763	Vicugna_pacos
ENSORLG00000004397	fip1l1b	98	57.192	ENSXETG00000011679	fip1l1	92	57.040	Xenopus_tropicalis
ENSORLG00000004397	fip1l1b	100	65.809	ENSXCOG00000013656	fip1l1b	95	70.562	Xiphophorus_couchianus
ENSORLG00000004397	fip1l1b	100	85.481	ENSXMAG00000017620	fip1l1b	100	85.481	Xiphophorus_maculatus