EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000004427 (Gene tree)
Gene ID: 101157002
Gene Symbol: si:ch211-117n7.8
Alias: -
Full Name: S1 RNA binding domain 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 47634 bases
Position: chr15:16000922-16048555
Accession: 101157002
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000005558	S1	PF00575.23	4.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000005559	-	3660	XM_023963391	ENSORLP00000005558	981 (aa)	XP_023819159	H2LHU2

Gene Model

Click here to download ENSORLG00000004427's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000004427's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000004427	si:ch211-117n7.8	84	53.617	ENSG00000068784	SRBD1	85	53.617	Homo_sapiens
ENSORLG00000004427	si:ch211-117n7.8	100	73.099	ENSAPOG00000005103	si:ch211-117n7.8	100	73.099	Acanthochromis_polyacanthus
ENSORLG00000004427	si:ch211-117n7.8	85	53.628	ENSAMEG00000005993	SRBD1	98	49.556	Ailuropoda_melanoleuca
ENSORLG00000004427	si:ch211-117n7.8	97	73.690	ENSACIG00000009875	si:ch211-117n7.8	100	73.690	Amphilophus_citrinellus
ENSORLG00000004427	si:ch211-117n7.8	100	72.798	ENSAOCG00000024718	si:ch211-117n7.8	100	72.798	Amphiprion_ocellaris
ENSORLG00000004427	si:ch211-117n7.8	97	73.212	ENSAPEG00000002645	si:ch211-117n7.8	100	73.212	Amphiprion_percula
ENSORLG00000004427	si:ch211-117n7.8	100	70.968	ENSATEG00000010844	si:ch211-117n7.8	100	71.261	Anabas_testudineus
ENSORLG00000004427	si:ch211-117n7.8	96	51.249	ENSAPLG00000006313	SRBD1	98	50.932	Anas_platyrhynchos
ENSORLG00000004427	si:ch211-117n7.8	81	53.475	ENSANAG00000025573	SRBD1	99	47.633	Aotus_nancymaae
ENSORLG00000004427	si:ch211-117n7.8	100	73.659	ENSACLG00000024219	si:ch211-117n7.8	100	74.634	Astatotilapia_calliptera
ENSORLG00000004427	si:ch211-117n7.8	100	59.381	ENSAMXG00000004294	SRBD1	100	59.768	Astyanax_mexicanus
ENSORLG00000004427	si:ch211-117n7.8	96	49.202	ENSBTAG00000007508	SRBD1	97	47.305	Bos_taurus
ENSORLG00000004427	si:ch211-117n7.8	97	49.205	ENSCJAG00000000727	SRBD1	98	48.733	Callithrix_jacchus
ENSORLG00000004427	si:ch211-117n7.8	82	53.783	ENSCAFG00000002554	SRBD1	98	49.217	Canis_familiaris
ENSORLG00000004427	si:ch211-117n7.8	82	54.502	ENSCAFG00020026284	SRBD1	98	54.502	Canis_lupus_dingo
ENSORLG00000004427	si:ch211-117n7.8	96	49.401	ENSCHIG00000016535	SRBD1	97	49.213	Capra_hircus
ENSORLG00000004427	si:ch211-117n7.8	84	53.547	ENSTSYG00000012797	SRBD1	85	53.547	Carlito_syrichta
ENSORLG00000004427	si:ch211-117n7.8	84	53.900	ENSCPOG00000004773	SRBD1	86	53.900	Cavia_porcellus
ENSORLG00000004427	si:ch211-117n7.8	84	53.157	ENSCCAG00000025589	SRBD1	85	53.157	Cebus_capucinus
ENSORLG00000004427	si:ch211-117n7.8	84	53.272	ENSCATG00000039530	SRBD1	85	53.272	Cercocebus_atys
ENSORLG00000004427	si:ch211-117n7.8	84	54.598	ENSCLAG00000008623	SRBD1	85	54.598	Chinchilla_lanigera
ENSORLG00000004427	si:ch211-117n7.8	84	53.272	ENSCSAG00000013350	SRBD1	85	53.272	Chlorocebus_sabaeus
ENSORLG00000004427	si:ch211-117n7.8	71	67.347	ENSCHOG00000003805	SRBD1	71	67.347	Choloepus_hoffmanni
ENSORLG00000004427	si:ch211-117n7.8	82	55.124	ENSCPBG00000005677	SRBD1	97	50.400	Chrysemys_picta_bellii
ENSORLG00000004427	si:ch211-117n7.8	76	38.202	ENSCING00000005950	-	99	38.202	Ciona_intestinalis
ENSORLG00000004427	si:ch211-117n7.8	76	38.734	ENSCSAVG00000000861	-	99	38.734	Ciona_savignyi
ENSORLG00000004427	si:ch211-117n7.8	84	53.617	ENSCANG00000016307	SRBD1	85	53.617	Colobus_angolensis_palliatus
ENSORLG00000004427	si:ch211-117n7.8	83	54.007	ENSCGRG00001000513	Srbd1	85	54.007	Cricetulus_griseus_chok1gshd
ENSORLG00000004427	si:ch211-117n7.8	83	54.007	ENSCGRG00000002283	Srbd1	85	54.007	Cricetulus_griseus_crigri
ENSORLG00000004427	si:ch211-117n7.8	100	66.112	ENSCSEG00000000856	si:ch211-117n7.8	100	65.854	Cynoglossus_semilaevis
ENSORLG00000004427	si:ch211-117n7.8	85	77.346	ENSCVAG00000020212	si:ch211-117n7.8	99	70.382	Cyprinodon_variegatus
ENSORLG00000004427	si:ch211-117n7.8	84	53.196	ENSDNOG00000018686	SRBD1	85	53.196	Dasypus_novemcinctus
ENSORLG00000004427	si:ch211-117n7.8	97	49.405	ENSDORG00000010468	Srbd1	97	49.405	Dipodomys_ordii
ENSORLG00000004427	si:ch211-117n7.8	76	32.956	FBgn0051156	CG31156	79	33.459	Drosophila_melanogaster
ENSORLG00000004427	si:ch211-117n7.8	87	53.188	ENSETEG00000000739	SRBD1	91	53.188	Echinops_telfairi
ENSORLG00000004427	si:ch211-117n7.8	70	45.179	ENSEBUG00000008902	si:ch211-117n7.8	95	45.179	Eptatretus_burgeri
ENSORLG00000004427	si:ch211-117n7.8	84	51.376	ENSEASG00005003132	SRBD1	94	54.928	Equus_asinus_asinus
ENSORLG00000004427	si:ch211-117n7.8	84	53.670	ENSECAG00000013865	SRBD1	83	53.670	Equus_caballus
ENSORLG00000004427	si:ch211-117n7.8	100	60.417	ENSELUG00000012592	si:ch211-117n7.8	100	60.529	Esox_lucius
ENSORLG00000004427	si:ch211-117n7.8	84	53.670	ENSFCAG00000005101	SRBD1	85	53.670	Felis_catus
ENSORLG00000004427	si:ch211-117n7.8	96	50.000	ENSFALG00000012966	SRBD1	97	49.749	Ficedula_albicollis
ENSORLG00000004427	si:ch211-117n7.8	84	54.133	ENSFDAG00000016670	SRBD1	87	54.133	Fukomys_damarensis
ENSORLG00000004427	si:ch211-117n7.8	100	72.710	ENSFHEG00000019480	si:ch211-117n7.8	100	72.710	Fundulus_heteroclitus
ENSORLG00000004427	si:ch211-117n7.8	83	55.684	ENSGALG00000009990	SRBD1	96	52.277	Gallus_gallus
ENSORLG00000004427	si:ch211-117n7.8	100	72.407	ENSGAFG00000019664	si:ch211-117n7.8	100	72.701	Gambusia_affinis
ENSORLG00000004427	si:ch211-117n7.8	60	74.961	ENSGACG00000010794	si:ch211-117n7.8	100	74.961	Gasterosteus_aculeatus
ENSORLG00000004427	si:ch211-117n7.8	82	55.595	ENSGAGG00000006166	SRBD1	99	55.595	Gopherus_agassizii
ENSORLG00000004427	si:ch211-117n7.8	84	53.617	ENSGGOG00000005910	SRBD1	87	53.617	Gorilla_gorilla
ENSORLG00000004427	si:ch211-117n7.8	97	61.895	ENSHBUG00000013207	si:ch211-117n7.8	100	62.198	Haplochromis_burtoni
ENSORLG00000004427	si:ch211-117n7.8	97	49.546	ENSHGLG00000018153	-	97	49.546	Heterocephalus_glaber_female
ENSORLG00000004427	si:ch211-117n7.8	84	53.873	ENSHGLG00100015183	-	86	53.873	Heterocephalus_glaber_male
ENSORLG00000004427	si:ch211-117n7.8	86	64.520	ENSIPUG00000009661	srbd1	100	59.863	Ictalurus_punctatus
ENSORLG00000004427	si:ch211-117n7.8	84	54.693	ENSSTOG00000005898	SRBD1	85	54.693	Ictidomys_tridecemlineatus
ENSORLG00000004427	si:ch211-117n7.8	99	46.311	ENSJJAG00000022244	Srbd1	99	46.311	Jaculus_jaculus
ENSORLG00000004427	si:ch211-117n7.8	99	73.137	ENSKMAG00000003473	si:ch211-117n7.8	100	73.137	Kryptolebias_marmoratus
ENSORLG00000004427	si:ch211-117n7.8	100	72.293	ENSLBEG00000027518	si:ch211-117n7.8	100	72.293	Labrus_bergylta
ENSORLG00000004427	si:ch211-117n7.8	82	56.287	ENSLACG00000009790	SRBD1	98	56.287	Latimeria_chalumnae
ENSORLG00000004427	si:ch211-117n7.8	83	63.963	ENSLOCG00000016360	si:ch211-117n7.8	99	56.867	Lepisosteus_oculatus
ENSORLG00000004427	si:ch211-117n7.8	84	53.272	ENSMFAG00000042026	SRBD1	85	53.272	Macaca_fascicularis
ENSORLG00000004427	si:ch211-117n7.8	84	53.272	ENSMMUG00000003490	SRBD1	85	53.272	Macaca_mulatta
ENSORLG00000004427	si:ch211-117n7.8	84	51.665	ENSMNEG00000034701	SRBD1	85	51.665	Macaca_nemestrina
ENSORLG00000004427	si:ch211-117n7.8	84	53.387	ENSMLEG00000000745	SRBD1	85	53.387	Mandrillus_leucophaeus
ENSORLG00000004427	si:ch211-117n7.8	100	70.939	ENSMAMG00000021921	si:ch211-117n7.8	100	71.526	Mastacembelus_armatus
ENSORLG00000004427	si:ch211-117n7.8	100	74.732	ENSMZEG00005027369	si:ch211-117n7.8	100	74.732	Maylandia_zebra
ENSORLG00000004427	si:ch211-117n7.8	77	53.218	ENSMGAG00000010273	SRBD1	99	53.218	Meleagris_gallopavo
ENSORLG00000004427	si:ch211-117n7.8	75	53.325	ENSMAUG00000013916	Srbd1	95	53.571	Mesocricetus_auratus
ENSORLG00000004427	si:ch211-117n7.8	84	54.305	ENSMICG00000007835	SRBD1	85	54.305	Microcebus_murinus
ENSORLG00000004427	si:ch211-117n7.8	98	48.574	ENSMOCG00000018716	Srbd1	98	48.574	Microtus_ochrogaster
ENSORLG00000004427	si:ch211-117n7.8	97	69.324	ENSMMOG00000007507	si:ch211-117n7.8	100	69.324	Mola_mola
ENSORLG00000004427	si:ch211-117n7.8	100	70.789	ENSMALG00000001562	si:ch211-117n7.8	100	71.178	Monopterus_albus
ENSORLG00000004427	si:ch211-117n7.8	83	53.140	MGP_CAROLIEiJ_G0021934	Srbd1	99	50.489	Mus_caroli
ENSORLG00000004427	si:ch211-117n7.8	83	52.975	ENSMUSG00000024135	Srbd1	96	47.232	Mus_musculus
ENSORLG00000004427	si:ch211-117n7.8	83	52.607	MGP_PahariEiJ_G0020924	Srbd1	85	52.607	Mus_pahari
ENSORLG00000004427	si:ch211-117n7.8	83	53.023	MGP_SPRETEiJ_G0022850	Srbd1	85	53.023	Mus_spretus
ENSORLG00000004427	si:ch211-117n7.8	81	54.384	ENSMLUG00000007039	SRBD1	83	54.384	Myotis_lucifugus
ENSORLG00000004427	si:ch211-117n7.8	82	52.638	ENSNGAG00000011893	Srbd1	84	52.638	Nannospalax_galili
ENSORLG00000004427	si:ch211-117n7.8	98	71.171	ENSNBRG00000012873	si:ch211-117n7.8	100	71.171	Neolamprologus_brichardi
ENSORLG00000004427	si:ch211-117n7.8	84	53.387	ENSNLEG00000016877	SRBD1	85	53.387	Nomascus_leucogenys
ENSORLG00000004427	si:ch211-117n7.8	84	53.078	ENSODEG00000012095	SRBD1	86	53.078	Octodon_degus
ENSORLG00000004427	si:ch211-117n7.8	100	74.927	ENSONIG00000000945	si:ch211-117n7.8	100	79.059	Oreochromis_niloticus
ENSORLG00000004427	si:ch211-117n7.8	84	53.379	ENSOCUG00000015385	SRBD1	99	47.927	Oryctolagus_cuniculus
ENSORLG00000004427	si:ch211-117n7.8	100	95.196	ENSORLG00020012792	si:ch211-117n7.8	100	95.196	Oryzias_latipes_hni
ENSORLG00000004427	si:ch211-117n7.8	100	94.603	ENSORLG00015018598	si:ch211-117n7.8	100	94.603	Oryzias_latipes_hsok
ENSORLG00000004427	si:ch211-117n7.8	99	84.320	ENSOMEG00000012229	si:ch211-117n7.8	99	85.649	Oryzias_melastigma
ENSORLG00000004427	si:ch211-117n7.8	82	52.113	ENSOGAG00000001076	SRBD1	84	51.865	Otolemur_garnettii
ENSORLG00000004427	si:ch211-117n7.8	96	46.577	ENSOARG00000005958	SRBD1	98	46.432	Ovis_aries
ENSORLG00000004427	si:ch211-117n7.8	81	54.064	ENSPPAG00000038442	SRBD1	85	53.502	Pan_paniscus
ENSORLG00000004427	si:ch211-117n7.8	84	53.502	ENSPPRG00000003449	SRBD1	85	53.502	Panthera_pardus
ENSORLG00000004427	si:ch211-117n7.8	84	53.502	ENSPTIG00000012495	SRBD1	85	53.502	Panthera_tigris_altaica
ENSORLG00000004427	si:ch211-117n7.8	81	54.064	ENSPTRG00000011889	SRBD1	85	53.502	Pan_troglodytes
ENSORLG00000004427	si:ch211-117n7.8	84	53.272	ENSPANG00000008063	SRBD1	85	53.272	Papio_anubis
ENSORLG00000004427	si:ch211-117n7.8	93	61.900	ENSPKIG00000021973	si:ch211-117n7.8	99	59.591	Paramormyrops_kingsleyae
ENSORLG00000004427	si:ch211-117n7.8	83	54.273	ENSPSIG00000008992	SRBD1	99	48.745	Pelodiscus_sinensis
ENSORLG00000004427	si:ch211-117n7.8	90	68.920	ENSPMGG00000013348	si:ch211-117n7.8	99	66.265	Periophthalmus_magnuspinnatus
ENSORLG00000004427	si:ch211-117n7.8	98	47.864	ENSPEMG00000020684	Srbd1	98	47.864	Peromyscus_maniculatus_bairdii
ENSORLG00000004427	si:ch211-117n7.8	100	73.092	ENSPFOG00000010650	si:ch211-117n7.8	100	73.092	Poecilia_formosa
ENSORLG00000004427	si:ch211-117n7.8	100	73.190	ENSPLAG00000002141	si:ch211-117n7.8	100	73.190	Poecilia_latipinna
ENSORLG00000004427	si:ch211-117n7.8	100	73.288	ENSPMEG00000018537	si:ch211-117n7.8	100	73.288	Poecilia_mexicana
ENSORLG00000004427	si:ch211-117n7.8	100	71.220	ENSPREG00000003258	si:ch211-117n7.8	100	71.220	Poecilia_reticulata
ENSORLG00000004427	si:ch211-117n7.8	84	49.624	ENSPPYG00000012444	SRBD1	85	49.517	Pongo_abelii
ENSORLG00000004427	si:ch211-117n7.8	73	49.077	ENSPCAG00000005629	SRBD1	80	49.077	Procavia_capensis
ENSORLG00000004427	si:ch211-117n7.8	84	45.268	ENSPCOG00000017669	SRBD1	84	45.268	Propithecus_coquereli
ENSORLG00000004427	si:ch211-117n7.8	84	46.445	ENSPVAG00000001782	SRBD1	85	46.445	Pteropus_vampyrus
ENSORLG00000004427	si:ch211-117n7.8	97	69.161	ENSPNYG00000000508	si:ch211-117n7.8	99	69.161	Pundamilia_nyererei
ENSORLG00000004427	si:ch211-117n7.8	94	62.487	ENSPNAG00000013492	SRBD1	100	60.352	Pygocentrus_nattereri
ENSORLG00000004427	si:ch211-117n7.8	83	52.729	ENSRNOG00000014720	Srbd1	85	52.729	Rattus_norvegicus
ENSORLG00000004427	si:ch211-117n7.8	81	53.737	ENSRBIG00000033486	SRBD1	83	53.737	Rhinopithecus_bieti
ENSORLG00000004427	si:ch211-117n7.8	81	53.737	ENSRROG00000041599	SRBD1	83	53.737	Rhinopithecus_roxellana
ENSORLG00000004427	si:ch211-117n7.8	81	53.765	ENSSBOG00000024982	SRBD1	83	53.765	Saimiri_boliviensis_boliviensis
ENSORLG00000004427	si:ch211-117n7.8	84	62.227	ENSSFOG00015001128	si:ch211-117n7.8	94	62.227	Scleropages_formosus
ENSORLG00000004427	si:ch211-117n7.8	100	71.331	ENSSMAG00000018256	si:ch211-117n7.8	100	71.331	Scophthalmus_maximus
ENSORLG00000004427	si:ch211-117n7.8	93	73.787	ENSSLDG00000023189	si:ch211-117n7.8	100	72.655	Seriola_lalandi_dorsalis
ENSORLG00000004427	si:ch211-117n7.8	83	49.024	ENSSARG00000009740	SRBD1	88	49.024	Sorex_araneus
ENSORLG00000004427	si:ch211-117n7.8	83	55.830	ENSSPUG00000010475	SRBD1	94	55.830	Sphenodon_punctatus
ENSORLG00000004427	si:ch211-117n7.8	92	72.611	ENSSPAG00000008092	-	100	69.862	Stegastes_partitus
ENSORLG00000004427	si:ch211-117n7.8	97	49.405	ENSSSCG00000008445	SRBD1	97	49.657	Sus_scrofa
ENSORLG00000004427	si:ch211-117n7.8	81	54.923	ENSTGUG00000003878	SRBD1	99	54.923	Taeniopygia_guttata
ENSORLG00000004427	si:ch211-117n7.8	100	67.476	ENSTRUG00000007080	si:ch211-117n7.8	98	73.077	Takifugu_rubripes
ENSORLG00000004427	si:ch211-117n7.8	97	66.567	ENSTNIG00000007464	si:ch211-117n7.8	98	66.567	Tetraodon_nigroviridis
ENSORLG00000004427	si:ch211-117n7.8	55	78.723	ENSTBEG00000004556	SRBD1	52	78.723	Tupaia_belangeri
ENSORLG00000004427	si:ch211-117n7.8	75	57.951	ENSTTRG00000011871	SRBD1	91	49.528	Tursiops_truncatus
ENSORLG00000004427	si:ch211-117n7.8	81	54.706	ENSUAMG00000008126	SRBD1	97	46.014	Ursus_americanus
ENSORLG00000004427	si:ch211-117n7.8	81	54.824	ENSUMAG00000012902	SRBD1	83	54.824	Ursus_maritimus
ENSORLG00000004427	si:ch211-117n7.8	81	53.710	ENSVPAG00000006825	SRBD1	91	53.710	Vicugna_pacos
ENSORLG00000004427	si:ch211-117n7.8	82	53.846	ENSVVUG00000005389	SRBD1	98	49.112	Vulpes_vulpes
ENSORLG00000004427	si:ch211-117n7.8	98	42.762	ENSXETG00000002760	srbd1	98	42.410	Xenopus_tropicalis
ENSORLG00000004427	si:ch211-117n7.8	100	72.407	ENSXMAG00000016861	si:ch211-117n7.8	100	72.407	Xiphophorus_maculatus