EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000004883 (Gene tree)
Gene ID: 101169936
Gene Symbol: edc3
Alias: -
Full Name: enhancer of mRNA-decapping protein 3
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 6790 bases
Position: chr6:14911705-14918494
Accession: 101169936
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000006148	FDF	PF09532.10	7.8e-11	1	1
ENSORLP00000040144	FDF	PF09532.10	8.3e-11	1	1
ENSORLP00000006148	LSM14	PF12701.7	2.5e-10	1	1
ENSORLP00000040144	LSM14	PF12701.7	2.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000041830	-	4097	-	ENSORLP00000040144	491 (aa)	-	-
ENSORLT00000006149	-	3859	XM_004069559	ENSORLP00000006148	479 (aa)	XP_004069607	H2LJG0

Gene Model

Click here to download ENSORLG00000004883's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000004883's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000004883	edc3	100	62.733	ENSORLG00000014399	-	98	62.733

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000004883	edc3	100	67.780	ENSG00000179151	EDC3	100	77.778	Homo_sapiens
ENSORLG00000004883	edc3	100	87.891	ENSAPOG00000010791	edc3	100	87.891	Acanthochromis_polyacanthus
ENSORLG00000004883	edc3	100	58.182	ENSAPOG00000008655	EDC3	100	58.182	Acanthochromis_polyacanthus
ENSORLG00000004883	edc3	100	66.994	ENSAMEG00000008963	EDC3	100	66.994	Ailuropoda_melanoleuca
ENSORLG00000004883	edc3	99	63.690	ENSACIG00000005330	EDC3	99	64.113	Amphilophus_citrinellus
ENSORLG00000004883	edc3	100	87.056	ENSACIG00000017751	edc3	100	87.056	Amphilophus_citrinellus
ENSORLG00000004883	edc3	100	64.463	ENSAOCG00000009103	-	100	64.463	Amphiprion_ocellaris
ENSORLG00000004883	edc3	100	88.309	ENSAOCG00000005431	edc3	100	88.309	Amphiprion_ocellaris
ENSORLG00000004883	edc3	100	64.669	ENSAPEG00000007841	EDC3	100	64.669	Amphiprion_percula
ENSORLG00000004883	edc3	100	88.309	ENSAPEG00000000968	edc3	100	88.309	Amphiprion_percula
ENSORLG00000004883	edc3	100	65.155	ENSATEG00000004205	-	100	65.155	Anabas_testudineus
ENSORLG00000004883	edc3	100	88.935	ENSATEG00000015505	edc3	100	88.935	Anabas_testudineus
ENSORLG00000004883	edc3	89	66.960	ENSAPLG00000008957	EDC3	100	66.960	Anas_platyrhynchos
ENSORLG00000004883	edc3	77	65.909	ENSACAG00000000460	-	100	65.909	Anolis_carolinensis
ENSORLG00000004883	edc3	100	67.976	ENSANAG00000024078	EDC3	100	67.976	Aotus_nancymaae
ENSORLG00000004883	edc3	100	87.056	ENSACLG00000007232	edc3	100	87.056	Astatotilapia_calliptera
ENSORLG00000004883	edc3	100	64.050	ENSACLG00000018776	-	100	64.050	Astatotilapia_calliptera
ENSORLG00000004883	edc3	100	77.183	ENSAMXG00000001589	edc3	100	77.183	Astyanax_mexicanus
ENSORLG00000004883	edc3	100	67.191	ENSBTAG00000007308	EDC3	100	67.191	Bos_taurus
ENSORLG00000004883	edc3	100	67.976	ENSCJAG00000017681	EDC3	100	67.976	Callithrix_jacchus
ENSORLG00000004883	edc3	100	66.994	ENSCAFG00000017935	EDC3	100	66.994	Canis_familiaris
ENSORLG00000004883	edc3	100	66.994	ENSCAFG00020003909	EDC3	100	66.994	Canis_lupus_dingo
ENSORLG00000004883	edc3	100	67.387	ENSCHIG00000023658	EDC3	100	67.387	Capra_hircus
ENSORLG00000004883	edc3	100	67.583	ENSTSYG00000004822	EDC3	100	67.583	Carlito_syrichta
ENSORLG00000004883	edc3	100	67.780	ENSCPOG00000015595	EDC3	100	67.780	Cavia_porcellus
ENSORLG00000004883	edc3	100	67.780	ENSCCAG00000021663	EDC3	100	67.780	Cebus_capucinus
ENSORLG00000004883	edc3	100	67.780	ENSCATG00000037511	EDC3	100	67.780	Cercocebus_atys
ENSORLG00000004883	edc3	100	67.583	ENSCLAG00000005700	EDC3	100	67.583	Chinchilla_lanigera
ENSORLG00000004883	edc3	100	67.780	ENSCSAG00000014239	EDC3	100	67.780	Chlorocebus_sabaeus
ENSORLG00000004883	edc3	100	68.566	ENSCPBG00000024239	EDC3	100	68.566	Chrysemys_picta_bellii
ENSORLG00000004883	edc3	100	38.114	ENSCING00000022142	-	99	38.114	Ciona_intestinalis
ENSORLG00000004883	edc3	100	67.780	ENSCANG00000028699	EDC3	100	67.780	Colobus_angolensis_palliatus
ENSORLG00000004883	edc3	100	67.976	ENSCGRG00001013874	Edc3	100	67.976	Cricetulus_griseus_chok1gshd
ENSORLG00000004883	edc3	100	67.976	ENSCGRG00000011885	Edc3	100	67.976	Cricetulus_griseus_crigri
ENSORLG00000004883	edc3	99	85.983	ENSCSEG00000012996	edc3	99	85.983	Cynoglossus_semilaevis
ENSORLG00000004883	edc3	100	87.891	ENSCVAG00000008023	edc3	100	87.891	Cyprinodon_variegatus
ENSORLG00000004883	edc3	99	74.653	ENSDARG00000051931	edc3	99	74.653	Danio_rerio
ENSORLG00000004883	edc3	100	59.884	ENSDNOG00000030661	EDC3	100	59.884	Dasypus_novemcinctus
ENSORLG00000004883	edc3	68	77.778	ENSETEG00000002398	-	64	77.778	Echinops_telfairi
ENSORLG00000004883	edc3	100	66.994	ENSEASG00005005071	EDC3	100	66.994	Equus_asinus_asinus
ENSORLG00000004883	edc3	100	66.994	ENSECAG00000017994	EDC3	100	66.994	Equus_caballus
ENSORLG00000004883	edc3	100	70.062	ENSELUG00000007607	EDC3	100	70.062	Esox_lucius
ENSORLG00000004883	edc3	100	80.041	ENSELUG00000005794	edc3	100	80.041	Esox_lucius
ENSORLG00000004883	edc3	100	66.994	ENSFCAG00000002014	EDC3	100	66.994	Felis_catus
ENSORLG00000004883	edc3	98	67.068	ENSFALG00000004543	EDC3	96	67.068	Ficedula_albicollis
ENSORLG00000004883	edc3	100	68.173	ENSFDAG00000012582	EDC3	100	68.173	Fukomys_damarensis
ENSORLG00000004883	edc3	100	89.144	ENSFHEG00000009375	edc3	100	89.144	Fundulus_heteroclitus
ENSORLG00000004883	edc3	100	84.025	ENSGMOG00000002715	edc3	100	84.025	Gadus_morhua
ENSORLG00000004883	edc3	100	68.245	ENSGALG00000040181	EDC3	100	68.245	Gallus_gallus
ENSORLG00000004883	edc3	100	86.430	ENSGAFG00000014433	edc3	100	86.430	Gambusia_affinis
ENSORLG00000004883	edc3	99	60.117	ENSGACG00000014671	EDC3	99	61.057	Gasterosteus_aculeatus
ENSORLG00000004883	edc3	100	86.013	ENSGACG00000009783	edc3	100	86.013	Gasterosteus_aculeatus
ENSORLG00000004883	edc3	100	68.836	ENSGAGG00000023477	EDC3	100	68.836	Gopherus_agassizii
ENSORLG00000004883	edc3	100	67.780	ENSGGOG00000003552	EDC3	100	67.780	Gorilla_gorilla
ENSORLG00000004883	edc3	100	87.056	ENSHBUG00000003635	edc3	100	87.056	Haplochromis_burtoni
ENSORLG00000004883	edc3	100	64.256	ENSHBUG00000020817	EDC3	100	64.256	Haplochromis_burtoni
ENSORLG00000004883	edc3	100	85.239	ENSHCOG00000016834	edc3	100	85.239	Hippocampus_comes
ENSORLG00000004883	edc3	99	76.707	ENSIPUG00000005695	edc3	100	76.707	Ictalurus_punctatus
ENSORLG00000004883	edc3	100	67.976	ENSSTOG00000013936	EDC3	100	67.976	Ictidomys_tridecemlineatus
ENSORLG00000004883	edc3	100	67.583	ENSJJAG00000008074	Edc3	100	67.583	Jaculus_jaculus
ENSORLG00000004883	edc3	100	62.112	ENSKMAG00000001987	EDC3	100	62.112	Kryptolebias_marmoratus
ENSORLG00000004883	edc3	100	88.518	ENSKMAG00000001243	edc3	100	88.518	Kryptolebias_marmoratus
ENSORLG00000004883	edc3	100	63.895	ENSLBEG00000017984	EDC3	100	63.895	Labrus_bergylta
ENSORLG00000004883	edc3	100	87.056	ENSLBEG00000013435	edc3	99	87.056	Labrus_bergylta
ENSORLG00000004883	edc3	100	69.844	ENSLACG00000014149	EDC3	100	69.844	Latimeria_chalumnae
ENSORLG00000004883	edc3	99	72.267	ENSLOCG00000014625	edc3	99	72.470	Lepisosteus_oculatus
ENSORLG00000004883	edc3	100	67.717	ENSLAFG00000002992	EDC3	100	67.717	Loxodonta_africana
ENSORLG00000004883	edc3	100	67.583	ENSMFAG00000043074	EDC3	100	67.583	Macaca_fascicularis
ENSORLG00000004883	edc3	100	67.583	ENSMMUG00000011071	EDC3	100	67.583	Macaca_mulatta
ENSORLG00000004883	edc3	100	67.583	ENSMNEG00000035316	EDC3	100	67.583	Macaca_nemestrina
ENSORLG00000004883	edc3	100	67.780	ENSMLEG00000030372	EDC3	100	67.780	Mandrillus_leucophaeus
ENSORLG00000004883	edc3	99	63.485	ENSMAMG00000005423	-	99	63.485	Mastacembelus_armatus
ENSORLG00000004883	edc3	100	87.474	ENSMAMG00000000505	edc3	100	87.474	Mastacembelus_armatus
ENSORLG00000004883	edc3	100	86.848	ENSMZEG00005004892	edc3	100	86.848	Maylandia_zebra
ENSORLG00000004883	edc3	100	64.213	ENSMZEG00005005654	EDC3	100	64.213	Maylandia_zebra
ENSORLG00000004883	edc3	100	68.442	ENSMGAG00000002617	EDC3	100	68.442	Meleagris_gallopavo
ENSORLG00000004883	edc3	100	67.976	ENSMICG00000043190	EDC3	100	67.976	Microcebus_murinus
ENSORLG00000004883	edc3	100	68.173	ENSMOCG00000016205	Edc3	100	68.173	Microtus_ochrogaster
ENSORLG00000004883	edc3	99	88.075	ENSMMOG00000012278	edc3	99	88.075	Mola_mola
ENSORLG00000004883	edc3	100	67.780	ENSMODG00000009442	EDC3	100	67.780	Monodelphis_domestica
ENSORLG00000004883	edc3	100	87.474	ENSMALG00000008658	edc3	100	87.474	Monopterus_albus
ENSORLG00000004883	edc3	100	67.780	MGP_CAROLIEiJ_G0032280	Edc3	100	76.923	Mus_caroli
ENSORLG00000004883	edc3	100	67.780	ENSMUSG00000038957	Edc3	100	76.923	Mus_musculus
ENSORLG00000004883	edc3	100	67.780	MGP_PahariEiJ_G0015146	Edc3	100	76.923	Mus_pahari
ENSORLG00000004883	edc3	100	67.780	MGP_SPRETEiJ_G0033420	Edc3	100	76.923	Mus_spretus
ENSORLG00000004883	edc3	100	67.191	ENSMPUG00000017293	EDC3	100	67.191	Mustela_putorius_furo
ENSORLG00000004883	edc3	100	67.319	ENSMLUG00000016382	EDC3	100	67.319	Myotis_lucifugus
ENSORLG00000004883	edc3	100	67.387	ENSNGAG00000010923	Edc3	100	67.387	Nannospalax_galili
ENSORLG00000004883	edc3	100	64.742	ENSNBRG00000007881	EDC3	100	64.742	Neolamprologus_brichardi
ENSORLG00000004883	edc3	100	86.848	ENSNBRG00000002434	edc3	100	86.848	Neolamprologus_brichardi
ENSORLG00000004883	edc3	100	57.957	ENSNLEG00000014577	EDC3	100	57.957	Nomascus_leucogenys
ENSORLG00000004883	edc3	100	67.850	ENSMEUG00000009077	EDC3	100	67.850	Notamacropus_eugenii
ENSORLG00000004883	edc3	84	77.778	ENSOPRG00000009540	-	79	77.778	Ochotona_princeps
ENSORLG00000004883	edc3	100	60.618	ENSONIG00000002932	-	100	60.618	Oreochromis_niloticus
ENSORLG00000004883	edc3	100	87.265	ENSONIG00000008434	edc3	100	87.265	Oreochromis_niloticus
ENSORLG00000004883	edc3	77	64.987	ENSOCUG00000017740	EDC3	86	64.987	Oryctolagus_cuniculus
ENSORLG00000004883	edc3	100	99.165	ENSORLG00020012262	edc3	100	99.165	Oryzias_latipes_hni
ENSORLG00000004883	edc3	100	62.733	ENSORLG00020019446	-	100	62.733	Oryzias_latipes_hni
ENSORLG00000004883	edc3	100	99.165	ENSORLG00015005634	edc3	100	99.165	Oryzias_latipes_hsok
ENSORLG00000004883	edc3	100	62.733	ENSORLG00015017635	-	96	62.733	Oryzias_latipes_hsok
ENSORLG00000004883	edc3	100	63.636	ENSOMEG00000017354	EDC3	100	63.636	Oryzias_melastigma
ENSORLG00000004883	edc3	100	95.825	ENSOMEG00000014026	edc3	100	95.825	Oryzias_melastigma
ENSORLG00000004883	edc3	100	67.976	ENSOGAG00000014441	EDC3	100	68.173	Otolemur_garnettii
ENSORLG00000004883	edc3	100	66.667	ENSOARG00000003476	EDC3	100	67.059	Ovis_aries
ENSORLG00000004883	edc3	100	67.780	ENSPPAG00000040143	EDC3	100	67.780	Pan_paniscus
ENSORLG00000004883	edc3	100	67.191	ENSPPRG00000006257	EDC3	100	67.191	Panthera_pardus
ENSORLG00000004883	edc3	100	67.191	ENSPTIG00000017424	EDC3	100	67.191	Panthera_tigris_altaica
ENSORLG00000004883	edc3	100	67.780	ENSPTRG00000007279	EDC3	100	67.780	Pan_troglodytes
ENSORLG00000004883	edc3	100	67.780	ENSPANG00000015997	EDC3	100	67.780	Papio_anubis
ENSORLG00000004883	edc3	100	73.320	ENSPKIG00000004416	edc3	100	73.320	Paramormyrops_kingsleyae
ENSORLG00000004883	edc3	100	72.525	ENSPKIG00000019810	EDC3	100	72.525	Paramormyrops_kingsleyae
ENSORLG00000004883	edc3	100	64.244	ENSPSIG00000008474	EDC3	100	65.226	Pelodiscus_sinensis
ENSORLG00000004883	edc3	100	85.239	ENSPMGG00000007223	edc3	100	85.239	Periophthalmus_magnuspinnatus
ENSORLG00000004883	edc3	100	68.369	ENSPEMG00000015260	Edc3	100	68.369	Peromyscus_maniculatus_bairdii
ENSORLG00000004883	edc3	100	67.653	ENSPCIG00000006276	EDC3	70	67.787	Phascolarctos_cinereus
ENSORLG00000004883	edc3	100	87.683	ENSPFOG00000012204	edc3	100	87.683	Poecilia_formosa
ENSORLG00000004883	edc3	100	87.683	ENSPLAG00000014420	edc3	100	87.683	Poecilia_latipinna
ENSORLG00000004883	edc3	100	87.683	ENSPMEG00000023289	edc3	100	87.683	Poecilia_mexicana
ENSORLG00000004883	edc3	100	87.474	ENSPREG00000016022	edc3	100	87.474	Poecilia_reticulata
ENSORLG00000004883	edc3	100	66.601	ENSPPYG00000006642	EDC3	100	66.601	Pongo_abelii
ENSORLG00000004883	edc3	93	77.778	ENSPCAG00000002802	EDC3	88	77.778	Procavia_capensis
ENSORLG00000004883	edc3	100	67.976	ENSPCOG00000013364	EDC3	100	67.976	Propithecus_coquereli
ENSORLG00000004883	edc3	100	67.976	ENSPVAG00000014733	EDC3	100	67.976	Pteropus_vampyrus
ENSORLG00000004883	edc3	100	87.056	ENSPNYG00000021797	edc3	100	87.056	Pundamilia_nyererei
ENSORLG00000004883	edc3	100	64.256	ENSPNYG00000009669	EDC3	100	64.256	Pundamilia_nyererei
ENSORLG00000004883	edc3	100	78.175	ENSPNAG00000019657	edc3	100	78.175	Pygocentrus_nattereri
ENSORLG00000004883	edc3	99	67.787	ENSRNOG00000019579	Edc3	99	67.984	Rattus_norvegicus
ENSORLG00000004883	edc3	100	67.780	ENSRBIG00000019488	EDC3	100	67.780	Rhinopithecus_bieti
ENSORLG00000004883	edc3	100	67.780	ENSRROG00000034959	EDC3	100	67.780	Rhinopithecus_roxellana
ENSORLG00000004883	edc3	100	67.191	ENSSBOG00000004896	EDC3	100	67.191	Saimiri_boliviensis_boliviensis
ENSORLG00000004883	edc3	96	67.623	ENSSHAG00000015075	EDC3	95	67.623	Sarcophilus_harrisii
ENSORLG00000004883	edc3	100	71.074	ENSSFOG00015002439	edc3	100	71.134	Scleropages_formosus
ENSORLG00000004883	edc3	100	76.938	ENSSFOG00015016939	edc3	100	76.938	Scleropages_formosus
ENSORLG00000004883	edc3	100	87.265	ENSSMAG00000010695	edc3	100	87.265	Scophthalmus_maximus
ENSORLG00000004883	edc3	99	65.145	ENSSMAG00000010176	-	99	65.145	Scophthalmus_maximus
ENSORLG00000004883	edc3	100	66.942	ENSSDUG00000007671	EDC3	100	66.942	Seriola_dumerili
ENSORLG00000004883	edc3	100	89.353	ENSSDUG00000021844	edc3	100	89.353	Seriola_dumerili
ENSORLG00000004883	edc3	100	89.144	ENSSLDG00000022046	edc3	100	89.144	Seriola_lalandi_dorsalis
ENSORLG00000004883	edc3	79	79.839	ENSSARG00000003907	EDC3	80	79.839	Sorex_araneus
ENSORLG00000004883	edc3	100	66.994	ENSSPUG00000008232	EDC3	100	66.994	Sphenodon_punctatus
ENSORLG00000004883	edc3	100	88.100	ENSSPAG00000010009	edc3	100	88.100	Stegastes_partitus
ENSORLG00000004883	edc3	100	64.050	ENSSPAG00000020327	EDC3	100	64.463	Stegastes_partitus
ENSORLG00000004883	edc3	100	70.208	ENSSSCG00000001903	EDC3	100	70.208	Sus_scrofa
ENSORLG00000004883	edc3	100	68.442	ENSTGUG00000004007	EDC3	100	68.442	Taeniopygia_guttata
ENSORLG00000004883	edc3	100	85.625	ENSTRUG00000017078	edc3	100	85.625	Takifugu_rubripes
ENSORLG00000004883	edc3	100	85.239	ENSTNIG00000016047	edc3	100	85.239	Tetraodon_nigroviridis
ENSORLG00000004883	edc3	100	67.717	ENSTTRG00000007990	EDC3	100	67.717	Tursiops_truncatus
ENSORLG00000004883	edc3	100	66.994	ENSUAMG00000026710	-	100	66.994	Ursus_americanus
ENSORLG00000004883	edc3	100	66.994	ENSUMAG00000005006	EDC3	96	66.994	Ursus_maritimus
ENSORLG00000004883	edc3	84	68.519	ENSVPAG00000003499	-	79	68.519	Vicugna_pacos
ENSORLG00000004883	edc3	100	66.798	ENSVVUG00000018601	EDC3	100	66.798	Vulpes_vulpes
ENSORLG00000004883	edc3	72	73.352	ENSXETG00000010622	edc3	99	74.785	Xenopus_tropicalis
ENSORLG00000004883	edc3	100	87.474	ENSXMAG00000007377	edc3	100	87.474	Xiphophorus_maculatus