EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000005119 (Gene tree)
Gene ID: 101174612
Gene Symbol: smfn
Alias: -
Full Name: RNA exonuclease 2
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 8339 bases
Position: chr14:12381453-12389791
Accession: 101174612
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000006457	RNase_T	PF00929.24	6.7e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000006458	-	1806	XM_004076230	ENSORLP00000006457	308 (aa)	XP_004076278	H2LKA6

Gene Model

Click here to download ENSORLG00000005119's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000005119's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000005119	smfn	67	80.097	ENSG00000076043	REXO2	98	82.162	Homo_sapiens
ENSORLG00000005119	smfn	67	80.583	ENSAMEG00000013263	REXO2	87	80.583	Ailuropoda_melanoleuca
ENSORLG00000005119	smfn	60	85.326	ENSACIG00000023553	smfn	99	85.326	Amphilophus_citrinellus
ENSORLG00000005119	smfn	85	69.349	ENSAPEG00000012435	smfn	96	69.349	Amphiprion_percula
ENSORLG00000005119	smfn	90	67.626	ENSATEG00000015385	smfn	97	67.626	Anabas_testudineus
ENSORLG00000005119	smfn	62	78.534	ENSAPLG00000005045	REXO2	93	78.534	Anas_platyrhynchos
ENSORLG00000005119	smfn	65	66.502	ENSACAG00000011631	REXO2	99	64.623	Anolis_carolinensis
ENSORLG00000005119	smfn	67	81.068	ENSANAG00000020834	REXO2	87	81.068	Aotus_nancymaae
ENSORLG00000005119	smfn	74	68.924	ENSACLG00000024566	smfn	95	83.516	Astatotilapia_calliptera
ENSORLG00000005119	smfn	67	80.583	ENSBTAG00000005843	REXO2	87	80.583	Bos_taurus
ENSORLG00000005119	smfn	60	47.568	WBGene00007429	C08B6.8	93	58.904	Caenorhabditis_elegans
ENSORLG00000005119	smfn	67	80.097	ENSCJAG00000012434	REXO2	87	80.097	Callithrix_jacchus
ENSORLG00000005119	smfn	67	79.612	ENSCAFG00000013511	REXO2	87	79.612	Canis_familiaris
ENSORLG00000005119	smfn	67	80.583	ENSCAFG00020002513	REXO2	87	80.583	Canis_lupus_dingo
ENSORLG00000005119	smfn	67	80.583	ENSCHIG00000009264	REXO2	87	80.583	Capra_hircus
ENSORLG00000005119	smfn	67	80.583	ENSTSYG00000002237	REXO2	87	80.583	Carlito_syrichta
ENSORLG00000005119	smfn	62	71.875	ENSTSYG00000027948	-	98	71.875	Carlito_syrichta
ENSORLG00000005119	smfn	60	83.243	ENSCAPG00000006093	REXO2	98	83.243	Cavia_aperea
ENSORLG00000005119	smfn	68	79.426	ENSCPOG00000010548	REXO2	88	79.426	Cavia_porcellus
ENSORLG00000005119	smfn	67	81.068	ENSCCAG00000034979	REXO2	87	81.068	Cebus_capucinus
ENSORLG00000005119	smfn	67	80.097	ENSCATG00000015278	REXO2	87	80.097	Cercocebus_atys
ENSORLG00000005119	smfn	67	80.488	ENSCLAG00000011195	REXO2	87	80.488	Chinchilla_lanigera
ENSORLG00000005119	smfn	67	80.097	ENSCSAG00000002754	REXO2	87	80.097	Chlorocebus_sabaeus
ENSORLG00000005119	smfn	67	79.612	ENSCHOG00000000642	-	87	79.612	Choloepus_hoffmanni
ENSORLG00000005119	smfn	59	57.143	ENSCING00000009858	-	88	57.143	Ciona_intestinalis
ENSORLG00000005119	smfn	67	80.097	ENSCANG00000034756	REXO2	87	80.097	Colobus_angolensis_palliatus
ENSORLG00000005119	smfn	65	78.713	ENSCGRG00001010922	-	99	78.713	Cricetulus_griseus_chok1gshd
ENSORLG00000005119	smfn	65	80.198	ENSCGRG00001013673	-	99	80.198	Cricetulus_griseus_chok1gshd
ENSORLG00000005119	smfn	68	79.426	ENSCGRG00001019814	-	88	79.426	Cricetulus_griseus_chok1gshd
ENSORLG00000005119	smfn	68	79.426	ENSCGRG00000006235	Rexo2	88	79.426	Cricetulus_griseus_crigri
ENSORLG00000005119	smfn	88	67.266	ENSCSEG00000007214	smfn	98	67.266	Cynoglossus_semilaevis
ENSORLG00000005119	smfn	59	79.781	ENSCVAG00000012008	smfn	99	79.781	Cyprinodon_variegatus
ENSORLG00000005119	smfn	62	83.246	ENSDARG00000009806	smfn	73	83.246	Danio_rerio
ENSORLG00000005119	smfn	58	82.873	ENSDNOG00000046533	REXO2	87	82.873	Dasypus_novemcinctus
ENSORLG00000005119	smfn	62	64.062	ENSDORG00000025142	-	90	61.463	Dipodomys_ordii
ENSORLG00000005119	smfn	67	81.068	ENSDORG00000011255	Rexo2	87	81.068	Dipodomys_ordii
ENSORLG00000005119	smfn	66	48.544	FBgn0039115	CG10214	98	48.544	Drosophila_melanogaster
ENSORLG00000005119	smfn	58	79.888	ENSEBUG00000013964	REXO2	61	79.888	Eptatretus_burgeri
ENSORLG00000005119	smfn	67	80.583	ENSEASG00005006674	REXO2	87	80.583	Equus_asinus_asinus
ENSORLG00000005119	smfn	67	80.583	ENSECAG00000005988	REXO2	87	80.583	Equus_caballus
ENSORLG00000005119	smfn	70	77.419	ENSELUG00000020072	smfn	75	77.419	Esox_lucius
ENSORLG00000005119	smfn	67	80.583	ENSFCAG00000018632	REXO2	87	80.583	Felis_catus
ENSORLG00000005119	smfn	60	79.032	ENSFALG00000010044	REXO2	92	79.032	Ficedula_albicollis
ENSORLG00000005119	smfn	67	81.068	ENSFDAG00000011764	REXO2	87	81.068	Fukomys_damarensis
ENSORLG00000005119	smfn	61	82.979	ENSGMOG00000006370	smfn	97	82.979	Gadus_morhua
ENSORLG00000005119	smfn	63	81.443	ENSGALG00000035980	REXO2	84	81.122	Gallus_gallus
ENSORLG00000005119	smfn	83	68.441	ENSGAFG00000015349	smfn	94	68.441	Gambusia_affinis
ENSORLG00000005119	smfn	63	80.513	ENSGACG00000020096	smfn	96	80.513	Gasterosteus_aculeatus
ENSORLG00000005119	smfn	66	76.961	ENSGAGG00000021126	REXO2	89	76.961	Gopherus_agassizii
ENSORLG00000005119	smfn	67	80.097	ENSGGOG00000023267	REXO2	87	80.097	Gorilla_gorilla
ENSORLG00000005119	smfn	65	58.209	ENSHBUG00000020097	REXO2	75	58.209	Haplochromis_burtoni
ENSORLG00000005119	smfn	68	78.947	ENSHGLG00000013556	REXO2	88	78.947	Heterocephalus_glaber_female
ENSORLG00000005119	smfn	68	79.426	ENSHGLG00100005257	REXO2	88	79.426	Heterocephalus_glaber_male
ENSORLG00000005119	smfn	58	78.333	ENSHCOG00000007122	smfn	98	78.333	Hippocampus_comes
ENSORLG00000005119	smfn	63	87.113	ENSIPUG00000020440	rexo2	77	83.173	Ictalurus_punctatus
ENSORLG00000005119	smfn	67	81.068	ENSSTOG00000012465	REXO2	87	81.068	Ictidomys_tridecemlineatus
ENSORLG00000005119	smfn	67	81.068	ENSJJAG00000013710	-	87	81.068	Jaculus_jaculus
ENSORLG00000005119	smfn	65	58.706	ENSJJAG00000022605	-	81	58.706	Jaculus_jaculus
ENSORLG00000005119	smfn	72	76.211	ENSKMAG00000016795	smfn	80	76.652	Kryptolebias_marmoratus
ENSORLG00000005119	smfn	60	85.326	ENSLBEG00000006021	smfn	97	85.326	Labrus_bergylta
ENSORLG00000005119	smfn	72	67.257	ENSLACG00000018623	REXO2	91	67.257	Latimeria_chalumnae
ENSORLG00000005119	smfn	64	86.735	ENSLOCG00000002389	smfn	93	86.735	Lepisosteus_oculatus
ENSORLG00000005119	smfn	64	82.653	ENSLAFG00000012451	REXO2	88	78.947	Loxodonta_africana
ENSORLG00000005119	smfn	67	80.097	ENSMFAG00000041155	REXO2	87	80.097	Macaca_fascicularis
ENSORLG00000005119	smfn	67	80.097	ENSMMUG00000012269	REXO2	87	80.097	Macaca_mulatta
ENSORLG00000005119	smfn	67	80.097	ENSMNEG00000033379	REXO2	87	80.097	Macaca_nemestrina
ENSORLG00000005119	smfn	67	80.097	ENSMLEG00000036571	REXO2	87	80.097	Mandrillus_leucophaeus
ENSORLG00000005119	smfn	65	83.582	ENSMAMG00000021209	smfn	72	83.582	Mastacembelus_armatus
ENSORLG00000005119	smfn	74	68.924	ENSMZEG00005023224	-	96	68.924	Maylandia_zebra
ENSORLG00000005119	smfn	74	68.924	ENSMZEG00005020730	REXO2	96	68.924	Maylandia_zebra
ENSORLG00000005119	smfn	51	78.750	ENSMGAG00000003026	REXO2	98	78.750	Meleagris_gallopavo
ENSORLG00000005119	smfn	68	79.426	ENSMAUG00000014576	Rexo2	88	79.426	Mesocricetus_auratus
ENSORLG00000005119	smfn	67	81.068	ENSMICG00000010094	REXO2	87	81.068	Microcebus_murinus
ENSORLG00000005119	smfn	68	78.947	ENSMOCG00000009016	Rexo2	88	78.947	Microtus_ochrogaster
ENSORLG00000005119	smfn	67	81.463	ENSMMOG00000006430	smfn	76	81.463	Mola_mola
ENSORLG00000005119	smfn	66	80.488	ENSMODG00000013913	REXO2	87	80.488	Monodelphis_domestica
ENSORLG00000005119	smfn	91	63.889	ENSMALG00000018130	smfn	79	64.437	Monopterus_albus
ENSORLG00000005119	smfn	68	77.143	MGP_CAROLIEiJ_G0032166	Rexo2	89	77.143	Mus_caroli
ENSORLG00000005119	smfn	68	77.143	ENSMUSG00000032026	Rexo2	89	77.143	Mus_musculus
ENSORLG00000005119	smfn	68	77.143	MGP_PahariEiJ_G0015034	Rexo2	89	77.143	Mus_pahari
ENSORLG00000005119	smfn	68	77.143	MGP_SPRETEiJ_G0033305	Rexo2	89	77.143	Mus_spretus
ENSORLG00000005119	smfn	67	80.583	ENSMPUG00000003947	REXO2	87	80.583	Mustela_putorius_furo
ENSORLG00000005119	smfn	67	80.097	ENSMLUG00000009030	REXO2	87	80.097	Myotis_lucifugus
ENSORLG00000005119	smfn	65	81.188	ENSNGAG00000008819	Rexo2	99	81.188	Nannospalax_galili
ENSORLG00000005119	smfn	59	84.066	ENSNBRG00000006529	smfn	96	84.066	Neolamprologus_brichardi
ENSORLG00000005119	smfn	67	80.097	ENSNLEG00000029745	REXO2	87	80.097	Nomascus_leucogenys
ENSORLG00000005119	smfn	69	77.209	ENSMEUG00000011558	REXO2	99	77.209	Notamacropus_eugenii
ENSORLG00000005119	smfn	67	56.796	ENSOPRG00000011076	REXO2	87	56.796	Ochotona_princeps
ENSORLG00000005119	smfn	60	83.243	ENSODEG00000009750	-	98	83.243	Octodon_degus
ENSORLG00000005119	smfn	59	64.641	ENSODEG00000016046	-	91	64.641	Octodon_degus
ENSORLG00000005119	smfn	64	83.249	ENSONIG00000001954	smfn	84	83.249	Oreochromis_niloticus
ENSORLG00000005119	smfn	65	79.703	ENSOANG00000001754	REXO2	87	78.641	Ornithorhynchus_anatinus
ENSORLG00000005119	smfn	67	81.068	ENSOCUG00000004274	REXO2	82	81.068	Oryctolagus_cuniculus
ENSORLG00000005119	smfn	100	98.377	ENSORLG00020010121	smfn	100	98.377	Oryzias_latipes_hni
ENSORLG00000005119	smfn	100	97.735	ENSORLG00015015699	smfn	100	97.735	Oryzias_latipes_hsok
ENSORLG00000005119	smfn	89	85.766	ENSOMEG00000016878	REXO2	100	85.766	Oryzias_melastigma
ENSORLG00000005119	smfn	67	81.068	ENSOGAG00000016860	REXO2	87	81.068	Otolemur_garnettii
ENSORLG00000005119	smfn	64	82.653	ENSOARG00000001040	REXO2	97	79.710	Ovis_aries
ENSORLG00000005119	smfn	67	80.097	ENSPPAG00000039849	REXO2	87	80.097	Pan_paniscus
ENSORLG00000005119	smfn	67	80.583	ENSPPRG00000007255	REXO2	87	80.583	Panthera_pardus
ENSORLG00000005119	smfn	60	82.703	ENSPTIG00000015578	REXO2	98	82.703	Panthera_tigris_altaica
ENSORLG00000005119	smfn	67	80.097	ENSPTRG00000004306	REXO2	87	80.097	Pan_troglodytes
ENSORLG00000005119	smfn	67	80.097	ENSPANG00000010675	REXO2	87	80.097	Papio_anubis
ENSORLG00000005119	smfn	87	67.384	ENSPKIG00000000911	smfn	77	87.838	Paramormyrops_kingsleyae
ENSORLG00000005119	smfn	64	80.612	ENSPSIG00000005151	REXO2	75	79.024	Pelodiscus_sinensis
ENSORLG00000005119	smfn	60	82.703	ENSPMGG00000007442	smfn	98	82.703	Periophthalmus_magnuspinnatus
ENSORLG00000005119	smfn	68	64.115	ENSPEMG00000001421	Rexo2	87	63.636	Peromyscus_maniculatus_bairdii
ENSORLG00000005119	smfn	66	80.488	ENSPCIG00000011227	REXO2	55	80.488	Phascolarctos_cinereus
ENSORLG00000005119	smfn	85	67.528	ENSPFOG00000017861	smfn	99	81.592	Poecilia_formosa
ENSORLG00000005119	smfn	66	72.330	ENSPLAG00000007327	REXO2	90	66.239	Poecilia_latipinna
ENSORLG00000005119	smfn	85	67.528	ENSPMEG00000017343	smfn	96	67.528	Poecilia_mexicana
ENSORLG00000005119	smfn	85	66.052	ENSPREG00000016438	smfn	96	66.052	Poecilia_reticulata
ENSORLG00000005119	smfn	67	80.097	ENSPPYG00000003895	REXO2	87	80.097	Pongo_abelii
ENSORLG00000005119	smfn	64	82.143	ENSPCAG00000005237	REXO2	87	79.710	Procavia_capensis
ENSORLG00000005119	smfn	54	82.635	ENSPCOG00000027639	REXO2	86	82.635	Propithecus_coquereli
ENSORLG00000005119	smfn	67	68.750	ENSPVAG00000005295	REXO2	87	68.750	Pteropus_vampyrus
ENSORLG00000005119	smfn	74	68.526	ENSPNYG00000018401	smfn	96	68.526	Pundamilia_nyererei
ENSORLG00000005119	smfn	63	85.567	ENSPNAG00000005290	smfn	73	84.848	Pygocentrus_nattereri
ENSORLG00000005119	smfn	68	77.619	ENSRNOG00000018939	Rexo2	89	77.619	Rattus_norvegicus
ENSORLG00000005119	smfn	67	80.097	ENSRBIG00000037809	REXO2	87	80.097	Rhinopithecus_bieti
ENSORLG00000005119	smfn	67	80.097	ENSRROG00000038928	REXO2	87	80.097	Rhinopithecus_roxellana
ENSORLG00000005119	smfn	60	40.415	YLR059C	REX2	75	39.303	Saccharomyces_cerevisiae
ENSORLG00000005119	smfn	67	81.068	ENSSBOG00000028651	REXO2	87	81.068	Saimiri_boliviensis_boliviensis
ENSORLG00000005119	smfn	66	80.488	ENSSHAG00000008008	REXO2	88	80.488	Sarcophilus_harrisii
ENSORLG00000005119	smfn	60	83.243	ENSSFOG00015022414	smfn	98	83.243	Scleropages_formosus
ENSORLG00000005119	smfn	70	74.783	ENSSMAG00000003168	smfn	84	74.783	Scophthalmus_maximus
ENSORLG00000005119	smfn	81	72.656	ENSSDUG00000015624	smfn	90	72.656	Seriola_dumerili
ENSORLG00000005119	smfn	81	71.923	ENSSLDG00000014005	smfn	90	71.923	Seriola_lalandi_dorsalis
ENSORLG00000005119	smfn	51	75.159	ENSSPUG00000006005	REXO2	84	75.159	Sphenodon_punctatus
ENSORLG00000005119	smfn	60	87.568	ENSSPAG00000001530	smfn	99	87.568	Stegastes_partitus
ENSORLG00000005119	smfn	67	80.583	ENSSSCG00000015056	REXO2	87	80.583	Sus_scrofa
ENSORLG00000005119	smfn	64	78.173	ENSTGUG00000000121	REXO2	86	77.114	Taeniopygia_guttata
ENSORLG00000005119	smfn	63	79.381	ENSTRUG00000021529	smfn	73	79.397	Takifugu_rubripes
ENSORLG00000005119	smfn	62	83.158	ENSTNIG00000008588	smfn	86	83.077	Tetraodon_nigroviridis
ENSORLG00000005119	smfn	67	81.068	ENSTBEG00000017040	REXO2	88	79.426	Tupaia_belangeri
ENSORLG00000005119	smfn	68	77.990	ENSTTRG00000014928	REXO2	88	77.990	Tursiops_truncatus
ENSORLG00000005119	smfn	67	74.038	ENSUAMG00000019096	REXO2	86	82.036	Ursus_americanus
ENSORLG00000005119	smfn	67	80.583	ENSUMAG00000003770	REXO2	87	80.583	Ursus_maritimus
ENSORLG00000005119	smfn	60	64.865	ENSVPAG00000006301	REXO2	98	64.865	Vicugna_pacos
ENSORLG00000005119	smfn	67	80.583	ENSVVUG00000025223	REXO2	87	80.583	Vulpes_vulpes
ENSORLG00000005119	smfn	65	82.000	ENSXETG00000012648	rexo2	94	74.783	Xenopus_tropicalis
ENSORLG00000005119	smfn	62	77.368	ENSXCOG00000018838	smfn	94	78.919	Xiphophorus_couchianus
ENSORLG00000005119	smfn	85	66.045	ENSXMAG00000021125	smfn	85	66.045	Xiphophorus_maculatus