EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000005314 (Gene tree)
Gene ID: 101171767
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1B
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 4624 bases
Position: chr14:12604311-12608934
Accession: 101171767
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000028767	RRM_1	PF00076.22	1.2e-33	1	2
ENSORLP00000028767	RRM_1	PF00076.22	1.2e-33	2	2
ENSORLP00000006698	RRM_1	PF00076.22	1.4e-33	1	2
ENSORLP00000006698	RRM_1	PF00076.22	1.4e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000006699	-	1178	XM_023962353	ENSORLP00000006698	256 (aa)	XP_023818121	H2LKZ0
ENSORLT00000038036	-	1163	-	ENSORLP00000028767	251 (aa)	-	-

Gene Model

Click here to download ENSORLG00000005314's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG
ola05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000005314's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000005314	-	76	89.175	ENSORLG00000004580	srsf1a	78	87.113
ENSORLG00000005314	-	76	44.335	ENSORLG00000009268	srsf5a	74	38.938
ENSORLG00000005314	-	64	50.000	ENSORLG00000029854	srsf5b	53	47.368
ENSORLG00000005314	-	71	68.306	ENSORLG00000023709	srsf9	74	66.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000005314	-	75	95.187	ENSACIG00000002623	-	98	95.187	Amphilophus_citrinellus
ENSORLG00000005314	-	76	88.660	ENSACLG00000005676	-	78	87.113	Astatotilapia_calliptera
ENSORLG00000005314	-	99	93.870	ENSACLG00000021693	-	100	93.870	Astatotilapia_calliptera
ENSORLG00000005314	-	72	64.433	WBGene00004700	rsp-3	75	63.077	Caenorhabditis_elegans
ENSORLG00000005314	-	52	66.667	ENSCING00000000257	-	84	57.534	Ciona_intestinalis
ENSORLG00000005314	-	71	73.770	ENSCING00000007375	-	76	71.038	Ciona_intestinalis
ENSORLG00000005314	-	71	72.131	ENSCSAVG00000006093	-	91	69.399	Ciona_savignyi
ENSORLG00000005314	-	51	62.595	ENSCSAVG00000003567	-	89	52.632	Ciona_savignyi
ENSORLG00000005314	-	71	67.204	FBgn0283477	SF2	73	67.204	Drosophila_melanogaster
ENSORLG00000005314	-	96	73.171	ENSEBUG00000009582	-	97	72.881	Eptatretus_burgeri
ENSORLG00000005314	-	77	93.467	ENSFHEG00000017425	-	98	92.513	Fundulus_heteroclitus
ENSORLG00000005314	-	73	90.217	ENSGMOG00000010606	-	97	89.674	Gadus_morhua
ENSORLG00000005314	-	100	91.373	ENSGAFG00000000609	-	80	93.500	Gambusia_affinis
ENSORLG00000005314	-	76	89.175	ENSGAFG00000012721	-	78	87.113	Gambusia_affinis
ENSORLG00000005314	-	72	90.055	ENSGACG00000011094	-	96	88.950	Gasterosteus_aculeatus
ENSORLG00000005314	-	99	94.231	ENSHBUG00000015576	-	100	94.231	Haplochromis_burtoni
ENSORLG00000005314	-	50	65.600	ENSHBUG00000015600	-	92	60.465	Haplochromis_burtoni
ENSORLG00000005314	-	76	84.264	ENSHCOG00000008016	-	77	83.756	Hippocampus_comes
ENSORLG00000005314	-	94	84.082	ENSMFAG00000034223	-	65	87.179	Macaca_fascicularis
ENSORLG00000005314	-	99	94.595	ENSMZEG00005019071	-	100	94.595	Maylandia_zebra
ENSORLG00000005314	-	76	88.660	ENSMZEG00005007947	-	78	87.113	Maylandia_zebra
ENSORLG00000005314	-	77	92.386	ENSMMOG00000018849	-	79	92.386	Mola_mola
ENSORLG00000005314	-	99	93.870	ENSNBRG00000008134	-	100	93.870	Neolamprologus_brichardi
ENSORLG00000005314	-	76	88.660	ENSNBRG00000019981	-	78	87.113	Neolamprologus_brichardi
ENSORLG00000005314	-	66	66.265	ENSOPRG00000004745	-	96	65.663	Ochotona_princeps
ENSORLG00000005314	-	77	92.195	ENSONIG00000004857	-	81	92.195	Oreochromis_niloticus
ENSORLG00000005314	-	52	86.957	ENSOANG00000007320	-	53	97.674	Ornithorhynchus_anatinus
ENSORLG00000005314	-	69	53.179	ENSOCUG00000026856	-	96	54.913	Oryctolagus_cuniculus
ENSORLG00000005314	-	100	100.000	ENSORLG00015015497	-	100	100.000	Oryzias_latipes_hsok
ENSORLG00000005314	-	100	97.656	ENSOMEG00000017711	-	100	97.656	Oryzias_melastigma
ENSORLG00000005314	-	73	88.462	ENSPLAG00000019613	-	71	87.845	Poecilia_latipinna
ENSORLG00000005314	-	76	87.310	ENSPLAG00000019553	-	91	87.432	Poecilia_latipinna
ENSORLG00000005314	-	92	93.249	ENSPREG00000016792	-	80	94.444	Poecilia_reticulata
ENSORLG00000005314	-	76	88.660	ENSPNYG00000017115	-	78	87.113	Pundamilia_nyererei
ENSORLG00000005314	-	99	93.870	ENSPNYG00000020651	-	100	93.870	Pundamilia_nyererei
ENSORLG00000005314	-	81	92.754	ENSSFOG00015004989	-	71	90.769	Scleropages_formosus
ENSORLG00000005314	-	76	90.431	ENSSDUG00000003887	-	79	88.995	Seriola_dumerili
ENSORLG00000005314	-	77	85.787	ENSTRUG00000017058	-	80	84.772	Takifugu_rubripes
ENSORLG00000005314	-	77	82.828	ENSTNIG00000009993	-	81	81.818	Tetraodon_nigroviridis
ENSORLG00000005314	-	92	92.857	ENSXCOG00000017888	-	80	93.970	Xiphophorus_couchianus
ENSORLG00000005314	-	76	87.310	ENSXCOG00000009643	-	78	87.368	Xiphophorus_couchianus
ENSORLG00000005314	-	100	91.732	ENSXMAG00000010797	-	80	93.970	Xiphophorus_maculatus