EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000005502 (Gene tree)
Gene ID: 101164145
Gene Symbol: r3hdm2
Alias: -
Full Name: R3H domain containing 2
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 56181 bases
Position: chr5:10836319-10892499
Accession: 101164145
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000006929	R3H	PF01424.22	8.7e-11	1	1
ENSORLP00000006928	R3H	PF01424.22	9.8e-11	1	1
ENSORLP00000039537	R3H	PF01424.22	1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000036179	-	8506	XM_020703177	ENSORLP00000039537	1053 (aa)	XP_020558836	UPI0009DA4222
ENSORLT00000006930	-	2754	-	ENSORLP00000006929	917 (aa)	-	H2LLL5
ENSORLT00000006929	-	8113	XM_011474884	ENSORLP00000006928	1069 (aa)	XP_011473186	H2LLL4

Gene Model

Click here to download ENSORLG00000005502's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000005502's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000005502	r3hdm2	54	35.417	ENSORLG00000011606	-	74	36.940
ENSORLG00000005502	r3hdm2	72	56.637	ENSORLG00000004297	r3hdm1	77	62.094

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000005502	r3hdm2	99	62.778	ENSG00000179912	R3HDM2	89	80.159	Homo_sapiens
ENSORLG00000005502	r3hdm2	100	90.111	ENSAPOG00000020341	r3hdm2	100	90.657	Acanthochromis_polyacanthus
ENSORLG00000005502	r3hdm2	95	66.763	ENSAMEG00000004812	R3HDM2	99	64.543	Ailuropoda_melanoleuca
ENSORLG00000005502	r3hdm2	94	87.906	ENSACIG00000016146	r3hdm2	98	87.458	Amphilophus_citrinellus
ENSORLG00000005502	r3hdm2	100	90.296	ENSAOCG00000023694	r3hdm2	100	90.842	Amphiprion_ocellaris
ENSORLG00000005502	r3hdm2	100	89.002	ENSAPEG00000008851	r3hdm2	100	90.874	Amphiprion_percula
ENSORLG00000005502	r3hdm2	97	89.061	ENSATEG00000025024	r3hdm2	100	90.104	Anabas_testudineus
ENSORLG00000005502	r3hdm2	100	55.612	ENSAPLG00000004298	R3HDM2	93	67.512	Anas_platyrhynchos
ENSORLG00000005502	r3hdm2	99	60.236	ENSACAG00000006388	R3HDM2	99	62.049	Anolis_carolinensis
ENSORLG00000005502	r3hdm2	98	59.439	ENSANAG00000031310	-	99	60.174	Aotus_nancymaae
ENSORLG00000005502	r3hdm2	99	62.917	ENSANAG00000025397	-	99	64.306	Aotus_nancymaae
ENSORLG00000005502	r3hdm2	100	89.537	ENSACLG00000019106	r3hdm2	100	89.342	Astatotilapia_calliptera
ENSORLG00000005502	r3hdm2	95	66.699	ENSAMXG00000017180	r3hdm2	99	70.152	Astyanax_mexicanus
ENSORLG00000005502	r3hdm2	96	64.976	ENSBTAG00000018361	R3HDM2	99	64.202	Bos_taurus
ENSORLG00000005502	r3hdm2	99	62.628	ENSCJAG00000007365	R3HDM2	99	64.237	Callithrix_jacchus
ENSORLG00000005502	r3hdm2	97	65.081	ENSCAFG00000000215	R3HDM2	99	65.175	Canis_familiaris
ENSORLG00000005502	r3hdm2	99	65.056	ENSCAFG00020023713	R3HDM2	99	65.367	Canis_lupus_dingo
ENSORLG00000005502	r3hdm2	95	66.667	ENSCHIG00000014022	R3HDM2	99	64.657	Capra_hircus
ENSORLG00000005502	r3hdm2	99	62.604	ENSTSYG00000001449	R3HDM2	99	64.689	Carlito_syrichta
ENSORLG00000005502	r3hdm2	95	67.861	ENSCPOG00000009217	R3HDM2	99	64.810	Cavia_porcellus
ENSORLG00000005502	r3hdm2	88	62.800	ENSCCAG00000026083	R3HDM2	99	65.483	Cebus_capucinus
ENSORLG00000005502	r3hdm2	99	64.815	ENSCATG00000036929	R3HDM2	99	64.411	Cercocebus_atys
ENSORLG00000005502	r3hdm2	95	67.215	ENSCLAG00000011997	R3HDM2	99	65.121	Chinchilla_lanigera
ENSORLG00000005502	r3hdm2	99	64.266	ENSCSAG00000004911	R3HDM2	99	63.737	Chlorocebus_sabaeus
ENSORLG00000005502	r3hdm2	74	66.267	ENSCHOG00000005636	R3HDM2	89	66.733	Choloepus_hoffmanni
ENSORLG00000005502	r3hdm2	99	63.645	ENSCPBG00000013922	R3HDM2	99	62.860	Chrysemys_picta_bellii
ENSORLG00000005502	r3hdm2	99	64.451	ENSCANG00000043807	R3HDM2	99	64.319	Colobus_angolensis_palliatus
ENSORLG00000005502	r3hdm2	99	63.469	ENSCGRG00001017324	R3hdm2	99	62.113	Cricetulus_griseus_chok1gshd
ENSORLG00000005502	r3hdm2	99	63.469	ENSCGRG00000003862	R3hdm2	99	62.113	Cricetulus_griseus_crigri
ENSORLG00000005502	r3hdm2	100	89.219	ENSCSEG00000010925	r3hdm2	100	88.848	Cynoglossus_semilaevis
ENSORLG00000005502	r3hdm2	100	88.816	ENSCVAG00000009058	r3hdm2	100	88.537	Cyprinodon_variegatus
ENSORLG00000005502	r3hdm2	94	71.135	ENSDARG00000102610	r3hdm2	99	74.330	Danio_rerio
ENSORLG00000005502	r3hdm2	99	63.779	ENSDNOG00000015033	R3HDM2	100	65.550	Dasypus_novemcinctus
ENSORLG00000005502	r3hdm2	94	63.832	ENSDORG00000011462	R3hdm2	98	64.604	Dipodomys_ordii
ENSORLG00000005502	r3hdm2	95	67.183	ENSEASG00005007091	R3HDM2	99	63.927	Equus_asinus_asinus
ENSORLG00000005502	r3hdm2	99	65.157	ENSECAG00000003157	R3HDM2	99	64.935	Equus_caballus
ENSORLG00000005502	r3hdm2	100	78.584	ENSELUG00000015969	r3hdm2	100	78.853	Esox_lucius
ENSORLG00000005502	r3hdm2	99	65.213	ENSFCAG00000000192	R3HDM2	98	64.678	Felis_catus
ENSORLG00000005502	r3hdm2	81	62.883	ENSFALG00000000255	R3HDM2	99	59.914	Ficedula_albicollis
ENSORLG00000005502	r3hdm2	99	64.815	ENSFDAG00000019385	R3HDM2	99	64.907	Fukomys_damarensis
ENSORLG00000005502	r3hdm2	100	89.860	ENSFHEG00000016484	r3hdm2	100	89.488	Fundulus_heteroclitus
ENSORLG00000005502	r3hdm2	95	82.307	ENSGMOG00000007961	r3hdm2	100	83.024	Gadus_morhua
ENSORLG00000005502	r3hdm2	99	62.803	ENSGALG00000043736	R3HDM2	99	61.741	Gallus_gallus
ENSORLG00000005502	r3hdm2	100	90.401	ENSGAFG00000013887	r3hdm2	100	90.019	Gambusia_affinis
ENSORLG00000005502	r3hdm2	95	88.184	ENSGACG00000006442	r3hdm2	100	88.281	Gasterosteus_aculeatus
ENSORLG00000005502	r3hdm2	99	63.101	ENSGAGG00000017797	R3HDM2	99	61.923	Gopherus_agassizii
ENSORLG00000005502	r3hdm2	99	64.815	ENSGGOG00000015007	R3HDM2	99	64.411	Gorilla_gorilla
ENSORLG00000005502	r3hdm2	99	65.399	ENSHGLG00000010434	-	99	65.088	Heterocephalus_glaber_female
ENSORLG00000005502	r3hdm2	89	60.187	ENSHGLG00000010421	-	97	59.277	Heterocephalus_glaber_female
ENSORLG00000005502	r3hdm2	90	60.000	ENSHGLG00100018871	-	96	58.403	Heterocephalus_glaber_male
ENSORLG00000005502	r3hdm2	99	65.306	ENSHGLG00100004183	-	99	64.995	Heterocephalus_glaber_male
ENSORLG00000005502	r3hdm2	100	85.370	ENSHCOG00000001142	r3hdm2	99	86.994	Hippocampus_comes
ENSORLG00000005502	r3hdm2	100	73.436	ENSIPUG00000023873	r3hdm2	100	72.439	Ictalurus_punctatus
ENSORLG00000005502	r3hdm2	99	60.923	ENSSTOG00000013424	R3HDM2	99	61.538	Ictidomys_tridecemlineatus
ENSORLG00000005502	r3hdm2	99	64.810	ENSJJAG00000010001	R3hdm2	99	64.345	Jaculus_jaculus
ENSORLG00000005502	r3hdm2	100	90.233	ENSKMAG00000012695	r3hdm2	97	89.851	Kryptolebias_marmoratus
ENSORLG00000005502	r3hdm2	100	90.056	ENSLBEG00000013115	r3hdm2	96	89.963	Labrus_bergylta
ENSORLG00000005502	r3hdm2	95	66.117	ENSLACG00000019064	r3hdm2	100	65.146	Latimeria_chalumnae
ENSORLG00000005502	r3hdm2	96	74.416	ENSLOCG00000005976	r3hdm2	99	75.000	Lepisosteus_oculatus
ENSORLG00000005502	r3hdm2	99	65.395	ENSLAFG00000006510	R3HDM2	99	65.302	Loxodonta_africana
ENSORLG00000005502	r3hdm2	99	64.842	ENSMFAG00000036385	R3HDM2	99	64.597	Macaca_fascicularis
ENSORLG00000005502	r3hdm2	99	65.463	ENSMMUG00000021789	R3HDM2	99	65.246	Macaca_mulatta
ENSORLG00000005502	r3hdm2	99	64.968	ENSMNEG00000025314	R3HDM2	99	64.782	Macaca_nemestrina
ENSORLG00000005502	r3hdm2	99	64.935	ENSMLEG00000028915	R3HDM2	99	64.504	Mandrillus_leucophaeus
ENSORLG00000005502	r3hdm2	100	91.381	ENSMAMG00000009793	r3hdm2	100	91.729	Mastacembelus_armatus
ENSORLG00000005502	r3hdm2	100	89.537	ENSMZEG00005007319	r3hdm2	100	89.342	Maylandia_zebra
ENSORLG00000005502	r3hdm2	99	62.257	ENSMICG00000012389	R3HDM2	99	64.723	Microcebus_murinus
ENSORLG00000005502	r3hdm2	99	64.200	ENSMOCG00000014425	R3hdm2	99	63.250	Microtus_ochrogaster
ENSORLG00000005502	r3hdm2	94	83.626	ENSMMOG00000007448	r3hdm2	99	83.884	Mola_mola
ENSORLG00000005502	r3hdm2	88	85.429	ENSMALG00000010211	r3hdm2	98	83.717	Monopterus_albus
ENSORLG00000005502	r3hdm2	99	64.750	MGP_CAROLIEiJ_G0015896	R3hdm2	99	63.915	Mus_caroli
ENSORLG00000005502	r3hdm2	99	64.903	ENSMUSG00000025404	R3hdm2	99	64.438	Mus_musculus
ENSORLG00000005502	r3hdm2	95	66.182	MGP_PahariEiJ_G0031189	R3hdm2	99	63.889	Mus_pahari
ENSORLG00000005502	r3hdm2	99	64.875	MGP_SPRETEiJ_G0016722	R3hdm2	99	64.411	Mus_spretus
ENSORLG00000005502	r3hdm2	94	66.275	ENSMPUG00000001818	R3HDM2	96	63.918	Mustela_putorius_furo
ENSORLG00000005502	r3hdm2	99	65.616	ENSMLUG00000004980	R3HDM2	99	64.782	Myotis_lucifugus
ENSORLG00000005502	r3hdm2	99	64.760	ENSNGAG00000018800	R3hdm2	99	64.630	Nannospalax_galili
ENSORLG00000005502	r3hdm2	94	86.157	ENSNBRG00000004483	r3hdm2	100	85.744	Neolamprologus_brichardi
ENSORLG00000005502	r3hdm2	99	65.028	ENSNLEG00000017351	R3HDM2	99	64.597	Nomascus_leucogenys
ENSORLG00000005502	r3hdm2	99	56.244	ENSMEUG00000008588	R3HDM2	99	55.360	Notamacropus_eugenii
ENSORLG00000005502	r3hdm2	99	58.998	ENSOPRG00000013670	R3HDM2	99	59.202	Ochotona_princeps
ENSORLG00000005502	r3hdm2	97	88.834	ENSONIG00000005075	r3hdm2	100	88.737	Oreochromis_niloticus
ENSORLG00000005502	r3hdm2	99	64.945	ENSOCUG00000013258	R3HDM2	99	63.488	Oryctolagus_cuniculus
ENSORLG00000005502	r3hdm2	100	99.626	ENSORLG00020017069	r3hdm2	100	99.626	Oryzias_latipes_hni
ENSORLG00000005502	r3hdm2	52	35.919	ENSORLG00020019613	-	66	36.567	Oryzias_latipes_hni
ENSORLG00000005502	r3hdm2	100	99.719	ENSORLG00015012735	r3hdm2	100	99.719	Oryzias_latipes_hsok
ENSORLG00000005502	r3hdm2	97	89.922	ENSOMEG00000018079	r3hdm2	100	89.922	Oryzias_melastigma
ENSORLG00000005502	r3hdm2	96	55.063	ENSOGAG00000027966	-	99	55.876	Otolemur_garnettii
ENSORLG00000005502	r3hdm2	99	62.280	ENSOGAG00000012055	R3HDM2	99	62.280	Otolemur_garnettii
ENSORLG00000005502	r3hdm2	99	61.531	ENSOARG00000006929	R3HDM2	99	64.113	Ovis_aries
ENSORLG00000005502	r3hdm2	99	65.000	ENSPPAG00000034395	R3HDM2	99	64.597	Pan_paniscus
ENSORLG00000005502	r3hdm2	99	62.338	ENSPPRG00000009240	R3HDM2	99	64.626	Panthera_pardus
ENSORLG00000005502	r3hdm2	99	62.338	ENSPTIG00000008752	R3HDM2	99	64.626	Panthera_tigris_altaica
ENSORLG00000005502	r3hdm2	99	64.907	ENSPTRG00000046457	R3HDM2	99	64.690	Pan_troglodytes
ENSORLG00000005502	r3hdm2	94	66.113	ENSPANG00000024002	R3HDM2	97	65.955	Papio_anubis
ENSORLG00000005502	r3hdm2	100	77.870	ENSPKIG00000003171	r3hdm2	100	77.315	Paramormyrops_kingsleyae
ENSORLG00000005502	r3hdm2	65	53.399	ENSPSIG00000006954	R3HDM2	99	56.449	Pelodiscus_sinensis
ENSORLG00000005502	r3hdm2	94	85.281	ENSPMGG00000007061	r3hdm2	99	86.149	Periophthalmus_magnuspinnatus
ENSORLG00000005502	r3hdm2	99	64.292	ENSPEMG00000015964	R3hdm2	99	63.333	Peromyscus_maniculatus_bairdii
ENSORLG00000005502	r3hdm2	99	61.553	ENSPCIG00000023841	R3HDM2	99	63.337	Phascolarctos_cinereus
ENSORLG00000005502	r3hdm2	91	87.606	ENSPFOG00000006077	r3hdm2	92	90.704	Poecilia_formosa
ENSORLG00000005502	r3hdm2	100	88.630	ENSPLAG00000002971	r3hdm2	100	90.313	Poecilia_latipinna
ENSORLG00000005502	r3hdm2	100	88.630	ENSPMEG00000005330	r3hdm2	100	90.313	Poecilia_mexicana
ENSORLG00000005502	r3hdm2	100	90.308	ENSPREG00000008424	r3hdm2	100	90.028	Poecilia_reticulata
ENSORLG00000005502	r3hdm2	96	59.729	ENSPPYG00000004685	R3HDM2	80	59.771	Pongo_abelii
ENSORLG00000005502	r3hdm2	88	79.859	ENSPCAG00000014642	R3HDM2	92	80.919	Procavia_capensis
ENSORLG00000005502	r3hdm2	99	62.488	ENSPCOG00000013201	R3HDM2	99	63.375	Propithecus_coquereli
ENSORLG00000005502	r3hdm2	99	65.274	ENSPVAG00000003967	R3HDM2	99	63.728	Pteropus_vampyrus
ENSORLG00000005502	r3hdm2	91	84.751	ENSPNYG00000013479	r3hdm2	100	84.855	Pundamilia_nyererei
ENSORLG00000005502	r3hdm2	100	74.275	ENSPNAG00000017473	r3hdm2	100	75.634	Pygocentrus_nattereri
ENSORLG00000005502	r3hdm2	95	65.700	ENSRNOG00000007801	R3hdm2	99	63.401	Rattus_norvegicus
ENSORLG00000005502	r3hdm2	99	60.853	ENSRBIG00000037403	R3HDM2	99	62.367	Rhinopithecus_bieti
ENSORLG00000005502	r3hdm2	99	65.584	ENSRROG00000022271	R3HDM2	99	64.504	Rhinopithecus_roxellana
ENSORLG00000005502	r3hdm2	99	62.591	ENSSBOG00000023547	R3HDM2	99	64.306	Saimiri_boliviensis_boliviensis
ENSORLG00000005502	r3hdm2	99	61.700	ENSSHAG00000003511	R3HDM2	99	64.602	Sarcophilus_harrisii
ENSORLG00000005502	r3hdm2	94	76.948	ENSSFOG00015011219	r3hdm2	99	78.292	Scleropages_formosus
ENSORLG00000005502	r3hdm2	100	88.537	ENSSMAG00000012073	r3hdm2	100	89.096	Scophthalmus_maximus
ENSORLG00000005502	r3hdm2	100	88.437	ENSSDUG00000019269	r3hdm2	100	90.263	Seriola_dumerili
ENSORLG00000005502	r3hdm2	100	89.805	ENSSLDG00000005252	r3hdm2	100	90.242	Seriola_lalandi_dorsalis
ENSORLG00000005502	r3hdm2	90	58.802	ENSSARG00000003958	R3HDM2	94	58.854	Sorex_araneus
ENSORLG00000005502	r3hdm2	92	63.636	ENSSPUG00000014132	R3HDM2	99	60.870	Sphenodon_punctatus
ENSORLG00000005502	r3hdm2	100	88.159	ENSSPAG00000022594	r3hdm2	100	90.291	Stegastes_partitus
ENSORLG00000005502	r3hdm2	99	62.015	ENSSSCG00000026498	R3HDM2	100	65.284	Sus_scrofa
ENSORLG00000005502	r3hdm2	72	63.625	ENSTGUG00000015881	R3HDM2	99	62.675	Taeniopygia_guttata
ENSORLG00000005502	r3hdm2	94	83.279	ENSTRUG00000015075	r3hdm2	99	83.093	Takifugu_rubripes
ENSORLG00000005502	r3hdm2	88	95.068	ENSTNIG00000007057	r3hdm2	89	95.068	Tetraodon_nigroviridis
ENSORLG00000005502	r3hdm2	82	65.052	ENSTBEG00000015967	R3HDM2	78	65.052	Tupaia_belangeri
ENSORLG00000005502	r3hdm2	89	67.898	ENSTTRG00000013082	R3HDM2	94	63.102	Tursiops_truncatus
ENSORLG00000005502	r3hdm2	95	65.988	ENSUAMG00000020913	R3HDM2	99	63.333	Ursus_americanus
ENSORLG00000005502	r3hdm2	91	65.824	ENSUMAG00000019179	R3HDM2	93	66.438	Ursus_maritimus
ENSORLG00000005502	r3hdm2	90	80.456	ENSVPAG00000008656	R3HDM2	91	76.636	Vicugna_pacos
ENSORLG00000005502	r3hdm2	97	64.986	ENSVVUG00000018014	R3HDM2	95	64.706	Vulpes_vulpes
ENSORLG00000005502	r3hdm2	99	61.852	ENSXETG00000017153	r3hdm2	99	60.019	Xenopus_tropicalis
ENSORLG00000005502	r3hdm2	87	85.429	ENSXCOG00000013882	r3hdm2	100	86.486	Xiphophorus_couchianus
ENSORLG00000005502	r3hdm2	100	90.587	ENSXMAG00000017978	r3hdm2	100	90.308	Xiphophorus_maculatus