EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000005847 (Gene tree)
Gene ID: 101167848
Gene Symbol: rbm47
Alias: -
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 31967 bases
Position: chr1:13520208-13552174
Accession: 101167848
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000037618	RRM_1	PF00076.22	3.1e-40	1	3
ENSORLP00000037618	RRM_1	PF00076.22	3.1e-40	2	3
ENSORLP00000037618	RRM_1	PF00076.22	3.1e-40	3	3
ENSORLP00000007356	RRM_1	PF00076.22	4.5e-40	1	3
ENSORLP00000007356	RRM_1	PF00076.22	4.5e-40	2	3
ENSORLP00000007356	RRM_1	PF00076.22	4.5e-40	3	3
ENSORLP00000032975	RRM_1	PF00076.22	5.1e-40	1	3
ENSORLP00000032975	RRM_1	PF00076.22	5.1e-40	2	3
ENSORLP00000032975	RRM_1	PF00076.22	5.1e-40	3	3
ENSORLP00000039967	RRM_1	PF00076.22	5.6e-40	1	3
ENSORLP00000039967	RRM_1	PF00076.22	5.6e-40	2	3
ENSORLP00000039967	RRM_1	PF00076.22	5.6e-40	3	3
ENSORLP00000041358	RRM_1	PF00076.22	5.6e-40	1	3
ENSORLP00000041358	RRM_1	PF00076.22	5.6e-40	2	3
ENSORLP00000041358	RRM_1	PF00076.22	5.6e-40	3	3
ENSORLP00000044095	RRM_1	PF00076.22	5.6e-40	1	3
ENSORLP00000044095	RRM_1	PF00076.22	5.6e-40	2	3
ENSORLP00000044095	RRM_1	PF00076.22	5.6e-40	3	3
ENSORLP00000045301	RRM_1	PF00076.22	5.6e-40	1	3
ENSORLP00000045301	RRM_1	PF00076.22	5.6e-40	2	3
ENSORLP00000045301	RRM_1	PF00076.22	5.6e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000046384	-	5837	XM_011475172	ENSORLP00000032975	603 (aa)	XP_011473474	UPI0005CC0AC4
ENSORLT00000044170	-	5999	XM_011475154	ENSORLP00000045301	611 (aa)	XP_011473456	UPI0005CBBF4C
ENSORLT00000007357	-	1767	-	ENSORLP00000007356	588 (aa)	-	H2LMT3
ENSORLT00000029044	-	5387	XM_011475137	ENSORLP00000041358	611 (aa)	XP_011473439	UPI0005CBBF4C
ENSORLT00000034779	-	5409	XM_020703093	ENSORLP00000044095	611 (aa)	XP_020558752	UPI0005CBBF4C
ENSORLT00000046162	-	4812	XM_020703112	ENSORLP00000037618	533 (aa)	XP_020558771	UPI0005CC589A
ENSORLT00000029003	-	5861	XM_011475132	ENSORLP00000039967	611 (aa)	XP_011473434	UPI0005CBBF4C

Gene Model

Click here to download ENSORLG00000005847's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000005847's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000005847	rbm47	56	65.320	ENSORLG00000002429	rbm46	66	64.725
ENSORLG00000005847	rbm47	57	51.935	ENSORLG00000009190	syncrip	67	45.324
ENSORLG00000005847	rbm47	81	51.264	ENSORLG00000013342	a1cf	92	51.805
ENSORLG00000005847	rbm47	62	51.343	ENSORLG00000014840	syncripl	77	44.893

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000005847	rbm47	100	80.902	ENSG00000163694	RBM47	100	86.175	Homo_sapiens
ENSORLG00000005847	rbm47	100	94.872	ENSAPOG00000011062	rbm47	100	94.872	Acanthochromis_polyacanthus
ENSORLG00000005847	rbm47	94	83.662	ENSAMEG00000009672	RBM47	100	76.578	Ailuropoda_melanoleuca
ENSORLG00000005847	rbm47	100	92.217	ENSACIG00000011531	rbm47	100	92.555	Amphilophus_citrinellus
ENSORLG00000005847	rbm47	100	94.615	ENSAOCG00000022245	rbm47	100	94.615	Amphiprion_ocellaris
ENSORLG00000005847	rbm47	100	94.615	ENSAPEG00000018304	rbm47	100	94.615	Amphiprion_percula
ENSORLG00000005847	rbm47	100	93.814	ENSATEG00000018400	rbm47	100	91.419	Anabas_testudineus
ENSORLG00000005847	rbm47	100	81.586	ENSAPLG00000013974	RBM47	100	76.087	Anas_platyrhynchos
ENSORLG00000005847	rbm47	100	78.608	ENSACAG00000011833	RBM47	100	74.585	Anolis_carolinensis
ENSORLG00000005847	rbm47	100	82.804	ENSANAG00000029440	RBM47	100	84.574	Aotus_nancymaae
ENSORLG00000005847	rbm47	100	93.798	ENSACLG00000016902	rbm47	100	93.798	Astatotilapia_calliptera
ENSORLG00000005847	rbm47	100	85.567	ENSAMXG00000021794	rbm47	100	85.128	Astyanax_mexicanus
ENSORLG00000005847	rbm47	100	79.434	ENSBTAG00000002356	RBM47	100	77.517	Bos_taurus
ENSORLG00000005847	rbm47	97	85.112	ENSCJAG00000019385	RBM47	100	84.840	Callithrix_jacchus
ENSORLG00000005847	rbm47	93	82.720	ENSCAFG00000015898	RBM47	100	75.960	Canis_familiaris
ENSORLG00000005847	rbm47	78	82.720	ENSCAFG00020010558	RBM47	94	82.804	Canis_lupus_dingo
ENSORLG00000005847	rbm47	100	79.434	ENSCHIG00000026214	RBM47	100	77.517	Capra_hircus
ENSORLG00000005847	rbm47	86	86.547	ENSTSYG00000033612	RBM47	93	87.168	Carlito_syrichta
ENSORLG00000005847	rbm47	100	73.454	ENSCAPG00000008426	RBM47	100	73.454	Cavia_aperea
ENSORLG00000005847	rbm47	100	82.540	ENSCPOG00000014100	RBM47	100	81.748	Cavia_porcellus
ENSORLG00000005847	rbm47	100	84.309	ENSCCAG00000030129	-	100	84.309	Cebus_capucinus
ENSORLG00000005847	rbm47	99	54.849	ENSCCAG00000024397	-	99	54.013	Cebus_capucinus
ENSORLG00000005847	rbm47	100	80.902	ENSCATG00000042064	RBM47	100	84.840	Cercocebus_atys
ENSORLG00000005847	rbm47	100	82.011	ENSCLAG00000001684	RBM47	100	84.840	Chinchilla_lanigera
ENSORLG00000005847	rbm47	94	84.225	ENSCSAG00000017060	RBM47	100	77.333	Chlorocebus_sabaeus
ENSORLG00000005847	rbm47	89	74.157	ENSCHOG00000011731	RBM47	88	76.906	Choloepus_hoffmanni
ENSORLG00000005847	rbm47	100	83.033	ENSCPBG00000013831	RBM47	100	78.094	Chrysemys_picta_bellii
ENSORLG00000005847	rbm47	100	81.746	ENSCANG00000019997	RBM47	100	84.574	Colobus_angolensis_palliatus
ENSORLG00000005847	rbm47	100	76.393	ENSCGRG00001020102	-	100	77.984	Cricetulus_griseus_chok1gshd
ENSORLG00000005847	rbm47	100	81.383	ENSCGRG00001000623	-	100	82.713	Cricetulus_griseus_chok1gshd
ENSORLG00000005847	rbm47	100	78.261	ENSCGRG00000007762	-	100	80.380	Cricetulus_griseus_crigri
ENSORLG00000005847	rbm47	100	75.862	ENSCGRG00000014760	-	100	77.454	Cricetulus_griseus_crigri
ENSORLG00000005847	rbm47	100	88.851	ENSCSEG00000004545	rbm47	100	88.851	Cynoglossus_semilaevis
ENSORLG00000005847	rbm47	100	92.564	ENSCVAG00000020144	rbm47	100	92.564	Cyprinodon_variegatus
ENSORLG00000005847	rbm47	100	81.683	ENSDARG00000061985	rbm47	100	81.518	Danio_rerio
ENSORLG00000005847	rbm47	94	85.112	ENSDNOG00000046854	RBM47	100	77.703	Dasypus_novemcinctus
ENSORLG00000005847	rbm47	100	80.612	ENSDORG00000010144	Rbm47	100	76.080	Dipodomys_ordii
ENSORLG00000005847	rbm47	94	82.402	ENSETEG00000009194	RBM47	100	76.628	Echinops_telfairi
ENSORLG00000005847	rbm47	91	73.775	ENSEBUG00000011912	rbm47	95	73.775	Eptatretus_burgeri
ENSORLG00000005847	rbm47	94	84.831	ENSEASG00005008443	RBM47	100	77.852	Equus_asinus_asinus
ENSORLG00000005847	rbm47	94	84.831	ENSECAG00000004400	RBM47	100	77.852	Equus_caballus
ENSORLG00000005847	rbm47	75	83.983	ENSEEUG00000001194	RBM47	75	85.281	Erinaceus_europaeus
ENSORLG00000005847	rbm47	100	87.563	ENSELUG00000006148	rbm47	100	87.563	Esox_lucius
ENSORLG00000005847	rbm47	94	83.662	ENSFCAG00000012399	RBM47	100	78.319	Felis_catus
ENSORLG00000005847	rbm47	100	81.748	ENSFALG00000002861	RBM47	100	77.333	Ficedula_albicollis
ENSORLG00000005847	rbm47	100	79.692	ENSFDAG00000016326	RBM47	100	79.692	Fukomys_damarensis
ENSORLG00000005847	rbm47	100	91.990	ENSFHEG00000007938	rbm47	100	89.386	Fundulus_heteroclitus
ENSORLG00000005847	rbm47	100	87.374	ENSGMOG00000014802	rbm47	100	81.715	Gadus_morhua
ENSORLG00000005847	rbm47	73	82.519	ENSGALG00000014267	RBM47	100	85.146	Gallus_gallus
ENSORLG00000005847	rbm47	73	88.889	ENSGAFG00000020571	rbm47	98	91.689	Gambusia_affinis
ENSORLG00000005847	rbm47	100	88.633	ENSGACG00000016223	rbm47	100	91.026	Gasterosteus_aculeatus
ENSORLG00000005847	rbm47	100	83.033	ENSGAGG00000020051	RBM47	100	78.094	Gopherus_agassizii
ENSORLG00000005847	rbm47	100	80.902	ENSGGOG00000001367	RBM47	100	84.840	Gorilla_gorilla
ENSORLG00000005847	rbm47	100	93.798	ENSHBUG00000003520	rbm47	100	91.176	Haplochromis_burtoni
ENSORLG00000005847	rbm47	100	59.369	ENSHGLG00000016914	RBM47	100	80.380	Heterocephalus_glaber_female
ENSORLG00000005847	rbm47	100	82.447	ENSHGLG00100014028	-	100	82.447	Heterocephalus_glaber_male
ENSORLG00000005847	rbm47	100	68.896	ENSHGLG00100003071	-	100	68.562	Heterocephalus_glaber_male
ENSORLG00000005847	rbm47	99	92.308	ENSHCOG00000002074	rbm47	99	92.308	Hippocampus_comes
ENSORLG00000005847	rbm47	100	87.147	ENSIPUG00000004743	rbm47	100	87.147	Ictalurus_punctatus
ENSORLG00000005847	rbm47	100	80.902	ENSSTOG00000004727	RBM47	100	83.598	Ictidomys_tridecemlineatus
ENSORLG00000005847	rbm47	94	85.393	ENSJJAG00000013823	Rbm47	100	75.456	Jaculus_jaculus
ENSORLG00000005847	rbm47	100	92.583	ENSKMAG00000000084	rbm47	100	92.583	Kryptolebias_marmoratus
ENSORLG00000005847	rbm47	100	91.795	ENSLBEG00000008436	rbm47	100	91.457	Labrus_bergylta
ENSORLG00000005847	rbm47	94	83.777	ENSLACG00000007196	RBM47	100	77.722	Latimeria_chalumnae
ENSORLG00000005847	rbm47	94	90.423	ENSLOCG00000012966	rbm47	95	85.309	Lepisosteus_oculatus
ENSORLG00000005847	rbm47	100	79.124	ENSLAFG00000011998	RBM47	100	77.258	Loxodonta_africana
ENSORLG00000005847	rbm47	100	80.902	ENSMFAG00000037967	RBM47	100	84.840	Macaca_fascicularis
ENSORLG00000005847	rbm47	94	84.225	ENSMMUG00000012036	RBM47	100	84.456	Macaca_mulatta
ENSORLG00000005847	rbm47	100	80.902	ENSMNEG00000040774	RBM47	100	84.840	Macaca_nemestrina
ENSORLG00000005847	rbm47	100	83.175	ENSMLEG00000041432	RBM47	100	86.349	Mandrillus_leucophaeus
ENSORLG00000005847	rbm47	100	93.282	ENSMAMG00000019143	rbm47	100	93.282	Mastacembelus_armatus
ENSORLG00000005847	rbm47	100	93.798	ENSMZEG00005023659	rbm47	100	91.639	Maylandia_zebra
ENSORLG00000005847	rbm47	100	82.005	ENSMGAG00000012226	RBM47	100	77.333	Meleagris_gallopavo
ENSORLG00000005847	rbm47	100	81.432	ENSMAUG00000006493	Rbm47	100	82.759	Mesocricetus_auratus
ENSORLG00000005847	rbm47	100	78.457	ENSMICG00000026417	RBM47	100	81.794	Microcebus_murinus
ENSORLG00000005847	rbm47	100	81.117	ENSMOCG00000021170	Rbm47	100	82.447	Microtus_ochrogaster
ENSORLG00000005847	rbm47	100	90.909	ENSMMOG00000007260	rbm47	100	91.074	Mola_mola
ENSORLG00000005847	rbm47	59	76.730	ENSMODG00000015426	-	97	77.814	Monodelphis_domestica
ENSORLG00000005847	rbm47	100	83.077	ENSMODG00000007003	RBM47	100	77.205	Monodelphis_domestica
ENSORLG00000005847	rbm47	100	75.550	ENSMODG00000020561	-	100	73.187	Monodelphis_domestica
ENSORLG00000005847	rbm47	100	93.041	ENSMALG00000005167	rbm47	100	93.041	Monopterus_albus
ENSORLG00000005847	rbm47	100	81.383	MGP_CAROLIEiJ_G0027258	Rbm47	100	82.713	Mus_caroli
ENSORLG00000005847	rbm47	100	81.383	ENSMUSG00000070780	Rbm47	100	82.713	Mus_musculus
ENSORLG00000005847	rbm47	100	81.117	MGP_PahariEiJ_G0017040	Rbm47	100	82.447	Mus_pahari
ENSORLG00000005847	rbm47	100	81.383	MGP_SPRETEiJ_G0028253	Rbm47	100	82.713	Mus_spretus
ENSORLG00000005847	rbm47	94	84.831	ENSMPUG00000006177	RBM47	94	76.628	Mustela_putorius_furo
ENSORLG00000005847	rbm47	100	80.769	ENSMLUG00000000889	RBM47	100	75.753	Myotis_lucifugus
ENSORLG00000005847	rbm47	100	79.692	ENSNGAG00000003325	Rbm47	100	75.000	Nannospalax_galili
ENSORLG00000005847	rbm47	100	91.489	ENSNBRG00000015092	rbm47	100	91.489	Neolamprologus_brichardi
ENSORLG00000005847	rbm47	100	80.902	ENSNLEG00000017151	RBM47	100	84.840	Nomascus_leucogenys
ENSORLG00000005847	rbm47	66	87.115	ENSMEUG00000009516	-	100	79.398	Notamacropus_eugenii
ENSORLG00000005847	rbm47	86	85.537	ENSOPRG00000016507	-	75	85.537	Ochotona_princeps
ENSORLG00000005847	rbm47	94	83.662	ENSODEG00000004873	RBM47	100	77.685	Octodon_degus
ENSORLG00000005847	rbm47	100	90.476	ENSONIG00000009061	rbm47	100	90.969	Oreochromis_niloticus
ENSORLG00000005847	rbm47	100	81.108	ENSOANG00000008978	RBM47	100	77.704	Ornithorhynchus_anatinus
ENSORLG00000005847	rbm47	100	79.434	ENSOCUG00000012034	RBM47	100	76.884	Oryctolagus_cuniculus
ENSORLG00000005847	rbm47	100	100.000	ENSORLG00020005154	rbm47	100	100.000	Oryzias_latipes_hni
ENSORLG00000005847	rbm47	100	99.742	ENSORLG00015000066	rbm47	100	99.742	Oryzias_latipes_hsok
ENSORLG00000005847	rbm47	100	97.933	ENSOMEG00000010730	rbm47	100	96.774	Oryzias_melastigma
ENSORLG00000005847	rbm47	94	79.213	ENSOGAG00000025193	-	100	71.644	Otolemur_garnettii
ENSORLG00000005847	rbm47	94	84.225	ENSOGAG00000029367	-	100	76.294	Otolemur_garnettii
ENSORLG00000005847	rbm47	100	68.624	ENSOARG00000012711	RBM47	100	69.631	Ovis_aries
ENSORLG00000005847	rbm47	94	84.225	ENSPPAG00000029763	RBM47	95	84.840	Pan_paniscus
ENSORLG00000005847	rbm47	100	73.906	ENSPPRG00000012873	RBM47	100	84.309	Panthera_pardus
ENSORLG00000005847	rbm47	81	85.315	ENSPTIG00000017046	RBM47	100	75.944	Panthera_tigris_altaica
ENSORLG00000005847	rbm47	100	80.902	ENSPTRG00000016006	RBM47	100	84.840	Pan_troglodytes
ENSORLG00000005847	rbm47	100	80.902	ENSPANG00000005980	RBM47	100	84.840	Papio_anubis
ENSORLG00000005847	rbm47	100	79.777	ENSPKIG00000013431	RBM47	98	85.090	Paramormyrops_kingsleyae
ENSORLG00000005847	rbm47	94	89.045	ENSPKIG00000005037	rbm47	100	84.615	Paramormyrops_kingsleyae
ENSORLG00000005847	rbm47	87	83.033	ENSPSIG00000017516	RBM47	97	80.907	Pelodiscus_sinensis
ENSORLG00000005847	rbm47	100	89.983	ENSPMGG00000018540	rbm47	100	89.983	Periophthalmus_magnuspinnatus
ENSORLG00000005847	rbm47	100	81.117	ENSPEMG00000011088	Rbm47	100	82.447	Peromyscus_maniculatus_bairdii
ENSORLG00000005847	rbm47	100	89.421	ENSPFOG00000007997	rbm47	100	89.421	Poecilia_formosa
ENSORLG00000005847	rbm47	100	89.169	ENSPLAG00000002072	rbm47	100	91.667	Poecilia_latipinna
ENSORLG00000005847	rbm47	100	90.513	ENSPMEG00000017492	rbm47	100	90.513	Poecilia_mexicana
ENSORLG00000005847	rbm47	100	90.769	ENSPREG00000008456	rbm47	100	91.935	Poecilia_reticulata
ENSORLG00000005847	rbm47	94	73.611	ENSPPYG00000014688	RBM47	98	68.739	Pongo_abelii
ENSORLG00000005847	rbm47	89	77.215	ENSPCAG00000011879	RBM47	81	83.500	Procavia_capensis
ENSORLG00000005847	rbm47	100	79.255	ENSPCOG00000023451	RBM47	100	82.493	Propithecus_coquereli
ENSORLG00000005847	rbm47	94	83.754	ENSPVAG00000003812	RBM47	100	76.628	Pteropus_vampyrus
ENSORLG00000005847	rbm47	100	91.028	ENSPNYG00000022868	rbm47	100	91.028	Pundamilia_nyererei
ENSORLG00000005847	rbm47	100	86.598	ENSPNAG00000007940	rbm47	100	82.401	Pygocentrus_nattereri
ENSORLG00000005847	rbm47	100	79.028	ENSRNOG00000002408	Rbm47	100	76.127	Rattus_norvegicus
ENSORLG00000005847	rbm47	100	81.746	ENSRBIG00000039601	RBM47	100	84.574	Rhinopithecus_bieti
ENSORLG00000005847	rbm47	100	81.746	ENSRROG00000044696	RBM47	100	84.574	Rhinopithecus_roxellana
ENSORLG00000005847	rbm47	100	74.324	ENSSBOG00000028475	RBM47	100	81.070	Saimiri_boliviensis_boliviensis
ENSORLG00000005847	rbm47	100	82.821	ENSSHAG00000017576	RBM47	100	82.821	Sarcophilus_harrisii
ENSORLG00000005847	rbm47	98	82.540	ENSSFOG00015024101	RBM47	100	82.540	Scleropages_formosus
ENSORLG00000005847	rbm47	100	79.008	ENSSFOG00015012445	rbm47	100	84.143	Scleropages_formosus
ENSORLG00000005847	rbm47	100	93.041	ENSSMAG00000009744	rbm47	100	93.041	Scophthalmus_maximus
ENSORLG00000005847	rbm47	100	92.386	ENSSDUG00000022684	rbm47	99	93.493	Seriola_dumerili
ENSORLG00000005847	rbm47	100	92.712	ENSSLDG00000003109	rbm47	100	92.881	Seriola_lalandi_dorsalis
ENSORLG00000005847	rbm47	85	79.287	ENSSARG00000001735	RBM47	75	81.960	Sorex_araneus
ENSORLG00000005847	rbm47	100	83.158	ENSSPUG00000007515	RBM47	100	83.598	Sphenodon_punctatus
ENSORLG00000005847	rbm47	100	94.359	ENSSPAG00000001257	rbm47	100	94.359	Stegastes_partitus
ENSORLG00000005847	rbm47	94	84.551	ENSSSCG00000008796	RBM47	100	77.349	Sus_scrofa
ENSORLG00000005847	rbm47	100	81.491	ENSTGUG00000008705	RBM47	100	77.219	Taeniopygia_guttata
ENSORLG00000005847	rbm47	100	89.474	ENSTRUG00000014050	rbm47	100	89.474	Takifugu_rubripes
ENSORLG00000005847	rbm47	100	91.990	ENSTNIG00000006127	rbm47	100	89.735	Tetraodon_nigroviridis
ENSORLG00000005847	rbm47	82	82.535	ENSTBEG00000001607	RBM47	76	82.181	Tupaia_belangeri
ENSORLG00000005847	rbm47	94	84.831	ENSTTRG00000002839	RBM47	100	77.104	Tursiops_truncatus
ENSORLG00000005847	rbm47	94	83.662	ENSUAMG00000021346	RBM47	100	77.129	Ursus_americanus
ENSORLG00000005847	rbm47	52	83.333	ENSVPAG00000000641	-	56	82.069	Vicugna_pacos
ENSORLG00000005847	rbm47	93	83.569	ENSVVUG00000014774	RBM47	100	76.087	Vulpes_vulpes
ENSORLG00000005847	rbm47	100	81.841	ENSXETG00000012802	rbm47	92	84.127	Xenopus_tropicalis
ENSORLG00000005847	rbm47	100	86.034	ENSXCOG00000000780	rbm47	100	91.935	Xiphophorus_couchianus
ENSORLG00000005847	rbm47	100	91.026	ENSXMAG00000009874	rbm47	100	91.026	Xiphophorus_maculatus