EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000005892 (Gene tree)
Gene ID: 101168608
Gene Symbol: lin7c
Alias: -
Full Name: 60S acidic ribosomal protein P2
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 12145 bases
Position: chr3:17892954-17905098
Accession: 101168608
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000031505	Ribosomal_60s	PF00428.19	4.4e-24	1	1
ENSORLP00000007410	Ribosomal_60s	PF00428.19	7e-24	1	1
ENSORLP00000007427	Ribosomal_60s	PF00428.19	1.5e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000007428	-	1235	-	ENSORLP00000007427	287 (aa)	-	H2LN04
ENSORLT00000040981	-	986	XM_004067042	ENSORLP00000031505	115 (aa)	XP_004067090	UPI0000E9D42A
ENSORLT00000007411	-	823	-	ENSORLP00000007410	132 (aa)	-	H2LMY7

Gene Model

Click here to download ENSORLG00000005892's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000005892's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000005892	lin7c	56	73.438	ENSORLG00000006409	rplp2	100	68.696

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000005892	lin7c	100	98.955	ENSOMEG00000018588	lin7c	100	98.955	Oryzias_melastigma