EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000005934 (Gene tree)
Gene ID: 101170118
Gene Symbol: smndc1
Alias: -
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 2868 bases
Position: chr15:19586763-19589630
Accession: 101170118
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000007459	TUDOR	PF00567.24	2.2e-06	1	1
ENSORLP00000007459	SMN	PF06003.12	1.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000007460	-	857	XM_004077086	ENSORLP00000007459	250 (aa)	XP_004077134	H2LN34

Gene Model

Click here to download ENSORLG00000005934's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000005934's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000005934	smndc1	95	76.050	ENSG00000119953	SMNDC1	100	76.050	Homo_sapiens
ENSORLG00000005934	smndc1	95	84.034	ENSAPOG00000021772	smndc1	100	84.034	Acanthochromis_polyacanthus
ENSORLG00000005934	smndc1	95	76.050	ENSAMEG00000005251	SMNDC1	100	76.050	Ailuropoda_melanoleuca
ENSORLG00000005934	smndc1	95	81.933	ENSACIG00000004819	smndc1	100	81.933	Amphilophus_citrinellus
ENSORLG00000005934	smndc1	95	83.613	ENSAOCG00000017869	smndc1	100	83.613	Amphiprion_ocellaris
ENSORLG00000005934	smndc1	95	83.613	ENSAPEG00000007752	smndc1	100	83.613	Amphiprion_percula
ENSORLG00000005934	smndc1	95	84.034	ENSATEG00000006830	smndc1	100	84.034	Anabas_testudineus
ENSORLG00000005934	smndc1	79	75.758	ENSAPLG00000004322	SMNDC1	100	75.758	Anas_platyrhynchos
ENSORLG00000005934	smndc1	95	76.471	ENSACAG00000005983	SMNDC1	100	76.471	Anolis_carolinensis
ENSORLG00000005934	smndc1	95	76.050	ENSANAG00000032875	SMNDC1	100	76.050	Aotus_nancymaae
ENSORLG00000005934	smndc1	95	80.672	ENSACLG00000016360	smndc1	100	80.672	Astatotilapia_calliptera
ENSORLG00000005934	smndc1	98	78.455	ENSAMXG00000020310	smndc1	100	78.992	Astyanax_mexicanus
ENSORLG00000005934	smndc1	95	75.630	ENSBTAG00000000551	SMNDC1	100	75.630	Bos_taurus
ENSORLG00000005934	smndc1	95	76.050	ENSCJAG00000018624	SMNDC1	100	76.050	Callithrix_jacchus
ENSORLG00000005934	smndc1	95	76.050	ENSCAFG00000010720	SMNDC1	100	76.050	Canis_familiaris
ENSORLG00000005934	smndc1	95	76.050	ENSCAFG00020011913	SMNDC1	100	76.050	Canis_lupus_dingo
ENSORLG00000005934	smndc1	95	75.630	ENSCHIG00000010604	SMNDC1	100	75.630	Capra_hircus
ENSORLG00000005934	smndc1	95	76.050	ENSTSYG00000026454	SMNDC1	100	76.050	Carlito_syrichta
ENSORLG00000005934	smndc1	95	62.500	ENSCAPG00000009132	SMNDC1	100	72.637	Cavia_aperea
ENSORLG00000005934	smndc1	95	76.050	ENSCPOG00000031666	SMNDC1	100	76.050	Cavia_porcellus
ENSORLG00000005934	smndc1	95	76.050	ENSCCAG00000021793	SMNDC1	100	76.050	Cebus_capucinus
ENSORLG00000005934	smndc1	95	75.630	ENSCATG00000035910	SMNDC1	100	75.630	Cercocebus_atys
ENSORLG00000005934	smndc1	95	76.050	ENSCLAG00000002838	SMNDC1	100	76.050	Chinchilla_lanigera
ENSORLG00000005934	smndc1	95	76.050	ENSCSAG00000005169	SMNDC1	100	76.050	Chlorocebus_sabaeus
ENSORLG00000005934	smndc1	77	71.503	ENSCHOG00000002936	SMNDC1	100	71.503	Choloepus_hoffmanni
ENSORLG00000005934	smndc1	95	76.050	ENSCPBG00000012837	SMNDC1	100	76.050	Chrysemys_picta_bellii
ENSORLG00000005934	smndc1	95	70.168	ENSCANG00000034620	-	100	70.168	Colobus_angolensis_palliatus
ENSORLG00000005934	smndc1	95	76.050	ENSCANG00000031720	-	100	76.050	Colobus_angolensis_palliatus
ENSORLG00000005934	smndc1	95	60.084	ENSCANG00000036994	-	100	60.084	Colobus_angolensis_palliatus
ENSORLG00000005934	smndc1	95	75.630	ENSCGRG00001012973	Smndc1	100	75.630	Cricetulus_griseus_chok1gshd
ENSORLG00000005934	smndc1	95	75.630	ENSCGRG00000012396	Smndc1	100	75.630	Cricetulus_griseus_crigri
ENSORLG00000005934	smndc1	95	82.353	ENSCSEG00000015621	smndc1	100	82.353	Cynoglossus_semilaevis
ENSORLG00000005934	smndc1	95	82.353	ENSCVAG00000020432	smndc1	100	82.353	Cyprinodon_variegatus
ENSORLG00000005934	smndc1	95	79.412	ENSDARG00000056235	smndc1	100	79.412	Danio_rerio
ENSORLG00000005934	smndc1	100	72.800	ENSDNOG00000016387	SMNDC1	87	72.800	Dasypus_novemcinctus
ENSORLG00000005934	smndc1	95	76.050	ENSDORG00000023715	Smndc1	100	76.050	Dipodomys_ordii
ENSORLG00000005934	smndc1	90	38.956	FBgn0039977	CG17454	98	40.161	Drosophila_melanogaster
ENSORLG00000005934	smndc1	95	67.220	ENSEBUG00000010929	smndc1	100	67.220	Eptatretus_burgeri
ENSORLG00000005934	smndc1	95	76.050	ENSEASG00005014930	SMNDC1	100	76.050	Equus_asinus_asinus
ENSORLG00000005934	smndc1	95	76.050	ENSECAG00000029973	SMNDC1	100	76.050	Equus_caballus
ENSORLG00000005934	smndc1	79	55.556	ENSEEUG00000013407	-	100	55.556	Erinaceus_europaeus
ENSORLG00000005934	smndc1	95	80.252	ENSELUG00000000227	smndc1	100	80.252	Esox_lucius
ENSORLG00000005934	smndc1	95	76.050	ENSFCAG00000027353	SMNDC1	100	76.050	Felis_catus
ENSORLG00000005934	smndc1	95	75.630	ENSFALG00000002306	SMNDC1	100	75.630	Ficedula_albicollis
ENSORLG00000005934	smndc1	95	76.050	ENSFDAG00000006468	SMNDC1	100	76.050	Fukomys_damarensis
ENSORLG00000005934	smndc1	95	85.714	ENSFHEG00000020150	smndc1	100	85.714	Fundulus_heteroclitus
ENSORLG00000005934	smndc1	95	81.513	ENSGMOG00000016585	smndc1	100	81.513	Gadus_morhua
ENSORLG00000005934	smndc1	95	75.630	ENSGALG00000008561	SMNDC1	100	75.630	Gallus_gallus
ENSORLG00000005934	smndc1	95	83.613	ENSGAFG00000011582	smndc1	100	83.613	Gambusia_affinis
ENSORLG00000005934	smndc1	95	81.092	ENSGACG00000009468	smndc1	100	81.092	Gasterosteus_aculeatus
ENSORLG00000005934	smndc1	95	76.050	ENSGAGG00000024547	SMNDC1	100	76.050	Gopherus_agassizii
ENSORLG00000005934	smndc1	95	76.050	ENSGGOG00000010071	SMNDC1	100	76.050	Gorilla_gorilla
ENSORLG00000005934	smndc1	95	80.672	ENSHBUG00000017596	smndc1	100	80.672	Haplochromis_burtoni
ENSORLG00000005934	smndc1	95	76.050	ENSHGLG00000013390	-	100	76.050	Heterocephalus_glaber_female
ENSORLG00000005934	smndc1	95	55.466	ENSHGLG00000001157	-	100	54.098	Heterocephalus_glaber_female
ENSORLG00000005934	smndc1	95	76.050	ENSHGLG00100004814	-	100	76.050	Heterocephalus_glaber_male
ENSORLG00000005934	smndc1	95	60.000	ENSHGLG00100004278	-	100	59.836	Heterocephalus_glaber_male
ENSORLG00000005934	smndc1	95	77.824	ENSHCOG00000000783	smndc1	100	77.824	Hippocampus_comes
ENSORLG00000005934	smndc1	95	80.672	ENSIPUG00000004217	smndc1	100	80.672	Ictalurus_punctatus
ENSORLG00000005934	smndc1	95	76.050	ENSSTOG00000006088	SMNDC1	100	76.050	Ictidomys_tridecemlineatus
ENSORLG00000005934	smndc1	95	76.050	ENSJJAG00000019974	Smndc1	100	76.050	Jaculus_jaculus
ENSORLG00000005934	smndc1	95	81.933	ENSKMAG00000020134	smndc1	100	81.933	Kryptolebias_marmoratus
ENSORLG00000005934	smndc1	95	82.353	ENSLBEG00000004598	smndc1	100	82.353	Labrus_bergylta
ENSORLG00000005934	smndc1	95	76.471	ENSLACG00000007784	SMNDC1	100	76.471	Latimeria_chalumnae
ENSORLG00000005934	smndc1	95	80.672	ENSLOCG00000012355	smndc1	100	80.672	Lepisosteus_oculatus
ENSORLG00000005934	smndc1	95	75.630	ENSLAFG00000014353	SMNDC1	100	75.630	Loxodonta_africana
ENSORLG00000005934	smndc1	95	76.050	ENSMFAG00000002433	-	100	76.050	Macaca_fascicularis
ENSORLG00000005934	smndc1	95	65.126	ENSMFAG00000038381	-	100	65.126	Macaca_fascicularis
ENSORLG00000005934	smndc1	95	65.126	ENSMMUG00000045875	-	100	65.126	Macaca_mulatta
ENSORLG00000005934	smndc1	95	76.050	ENSMMUG00000007775	SMNDC1	100	76.050	Macaca_mulatta
ENSORLG00000005934	smndc1	95	76.050	ENSMNEG00000042963	-	100	76.050	Macaca_nemestrina
ENSORLG00000005934	smndc1	95	66.807	ENSMNEG00000033853	-	100	66.807	Macaca_nemestrina
ENSORLG00000005934	smndc1	95	70.711	ENSMLEG00000040236	SMNDC1	100	70.293	Mandrillus_leucophaeus
ENSORLG00000005934	smndc1	85	80.751	ENSMAMG00000018233	smndc1	87	80.751	Mastacembelus_armatus
ENSORLG00000005934	smndc1	95	80.672	ENSMZEG00005027510	smndc1	100	80.672	Maylandia_zebra
ENSORLG00000005934	smndc1	80	75.500	ENSMGAG00000010777	SMNDC1	84	75.500	Meleagris_gallopavo
ENSORLG00000005934	smndc1	95	76.050	ENSMAUG00000012243	-	100	76.050	Mesocricetus_auratus
ENSORLG00000005934	smndc1	95	62.025	ENSMAUG00000005459	-	93	62.025	Mesocricetus_auratus
ENSORLG00000005934	smndc1	95	75.630	ENSMICG00000027336	-	100	75.630	Microcebus_murinus
ENSORLG00000005934	smndc1	95	65.126	ENSMICG00000031640	-	100	65.126	Microcebus_murinus
ENSORLG00000005934	smndc1	95	75.630	ENSMOCG00000002458	Smndc1	100	75.630	Microtus_ochrogaster
ENSORLG00000005934	smndc1	95	84.034	ENSMMOG00000008856	smndc1	100	84.034	Mola_mola
ENSORLG00000005934	smndc1	95	76.050	ENSMODG00000010542	SMNDC1	100	76.050	Monodelphis_domestica
ENSORLG00000005934	smndc1	95	81.513	ENSMALG00000017598	smndc1	100	81.513	Monopterus_albus
ENSORLG00000005934	smndc1	95	75.630	MGP_CAROLIEiJ_G0023072	Smndc1	100	75.630	Mus_caroli
ENSORLG00000005934	smndc1	95	75.630	ENSMUSG00000025024	Smndc1	100	75.630	Mus_musculus
ENSORLG00000005934	smndc1	95	75.630	MGP_PahariEiJ_G0014560	Smndc1	100	75.630	Mus_pahari
ENSORLG00000005934	smndc1	95	75.630	MGP_SPRETEiJ_G0023993	Smndc1	100	75.630	Mus_spretus
ENSORLG00000005934	smndc1	95	76.050	ENSMPUG00000002089	SMNDC1	100	76.050	Mustela_putorius_furo
ENSORLG00000005934	smndc1	95	75.630	ENSMLUG00000016007	SMNDC1	100	75.630	Myotis_lucifugus
ENSORLG00000005934	smndc1	95	76.050	ENSNGAG00000006833	Smndc1	100	76.050	Nannospalax_galili
ENSORLG00000005934	smndc1	95	81.092	ENSNBRG00000017089	smndc1	100	81.092	Neolamprologus_brichardi
ENSORLG00000005934	smndc1	95	76.050	ENSNLEG00000015471	SMNDC1	100	76.050	Nomascus_leucogenys
ENSORLG00000005934	smndc1	67	58.084	ENSMEUG00000010120	-	82	58.084	Notamacropus_eugenii
ENSORLG00000005934	smndc1	95	76.050	ENSOPRG00000015348	SMNDC1	100	76.050	Ochotona_princeps
ENSORLG00000005934	smndc1	95	55.882	ENSODEG00000007594	-	100	53.782	Octodon_degus
ENSORLG00000005934	smndc1	95	81.092	ENSONIG00000000434	smndc1	100	81.092	Oreochromis_niloticus
ENSORLG00000005934	smndc1	95	76.050	ENSOANG00000001598	SMNDC1	100	76.050	Ornithorhynchus_anatinus
ENSORLG00000005934	smndc1	95	76.050	ENSOCUG00000008145	-	100	76.050	Oryctolagus_cuniculus
ENSORLG00000005934	smndc1	95	57.143	ENSOCUG00000012274	-	100	59.664	Oryctolagus_cuniculus
ENSORLG00000005934	smndc1	100	99.600	ENSORLG00020008796	smndc1	100	99.600	Oryzias_latipes_hni
ENSORLG00000005934	smndc1	95	99.580	ENSORLG00015013666	smndc1	100	99.580	Oryzias_latipes_hsok
ENSORLG00000005934	smndc1	95	87.815	ENSOMEG00000007590	smndc1	100	87.815	Oryzias_melastigma
ENSORLG00000005934	smndc1	95	75.630	ENSOGAG00000000571	SMNDC1	100	75.630	Otolemur_garnettii
ENSORLG00000005934	smndc1	95	75.630	ENSOARG00000009500	SMNDC1	100	75.630	Ovis_aries
ENSORLG00000005934	smndc1	95	76.050	ENSPPAG00000027815	SMNDC1	100	76.050	Pan_paniscus
ENSORLG00000005934	smndc1	95	76.050	ENSPPRG00000013749	SMNDC1	100	76.050	Panthera_pardus
ENSORLG00000005934	smndc1	95	76.050	ENSPTIG00000011451	SMNDC1	100	76.050	Panthera_tigris_altaica
ENSORLG00000005934	smndc1	95	76.050	ENSPTRG00000002937	SMNDC1	100	76.050	Pan_troglodytes
ENSORLG00000005934	smndc1	95	72.269	ENSPANG00000031346	-	100	72.269	Papio_anubis
ENSORLG00000005934	smndc1	95	76.050	ENSPANG00000020805	-	100	76.050	Papio_anubis
ENSORLG00000005934	smndc1	95	78.992	ENSPKIG00000017164	smndc1	100	78.992	Paramormyrops_kingsleyae
ENSORLG00000005934	smndc1	95	76.050	ENSPSIG00000012257	SMNDC1	100	76.050	Pelodiscus_sinensis
ENSORLG00000005934	smndc1	95	81.513	ENSPMGG00000015651	smndc1	100	81.092	Periophthalmus_magnuspinnatus
ENSORLG00000005934	smndc1	95	76.050	ENSPEMG00000022058	Smndc1	100	76.050	Peromyscus_maniculatus_bairdii
ENSORLG00000005934	smndc1	95	62.963	ENSPMAG00000007705	smndc1	100	62.449	Petromyzon_marinus
ENSORLG00000005934	smndc1	92	57.391	ENSPCIG00000009693	-	99	57.391	Phascolarctos_cinereus
ENSORLG00000005934	smndc1	95	76.050	ENSPCIG00000018419	SMNDC1	100	76.050	Phascolarctos_cinereus
ENSORLG00000005934	smndc1	95	84.454	ENSPFOG00000017113	smndc1	100	84.454	Poecilia_formosa
ENSORLG00000005934	smndc1	95	83.613	ENSPLAG00000010372	smndc1	100	83.613	Poecilia_latipinna
ENSORLG00000005934	smndc1	95	84.034	ENSPMEG00000012288	smndc1	100	84.034	Poecilia_mexicana
ENSORLG00000005934	smndc1	95	83.613	ENSPREG00000012279	smndc1	100	83.613	Poecilia_reticulata
ENSORLG00000005934	smndc1	95	76.050	ENSPPYG00000002643	SMNDC1	100	76.050	Pongo_abelii
ENSORLG00000005934	smndc1	77	70.466	ENSPCAG00000016183	SMNDC1	100	70.466	Procavia_capensis
ENSORLG00000005934	smndc1	95	75.630	ENSPCOG00000024343	SMNDC1	100	75.630	Propithecus_coquereli
ENSORLG00000005934	smndc1	95	60.504	ENSPVAG00000004368	SMNDC1	100	60.504	Pteropus_vampyrus
ENSORLG00000005934	smndc1	79	80.303	ENSPNYG00000024093	smndc1	86	80.303	Pundamilia_nyererei
ENSORLG00000005934	smndc1	95	78.151	ENSPNAG00000025285	smndc1	100	78.151	Pygocentrus_nattereri
ENSORLG00000005934	smndc1	95	75.630	ENSRNOG00000014833	Smndc1	100	75.630	Rattus_norvegicus
ENSORLG00000005934	smndc1	95	75.630	ENSRBIG00000000224	-	100	75.630	Rhinopithecus_bieti
ENSORLG00000005934	smndc1	95	61.765	ENSRBIG00000032452	-	100	61.765	Rhinopithecus_bieti
ENSORLG00000005934	smndc1	95	62.185	ENSRROG00000039125	-	100	62.185	Rhinopithecus_roxellana
ENSORLG00000005934	smndc1	95	76.050	ENSRROG00000044992	-	100	76.050	Rhinopithecus_roxellana
ENSORLG00000005934	smndc1	95	76.050	ENSSBOG00000026789	SMNDC1	100	76.050	Saimiri_boliviensis_boliviensis
ENSORLG00000005934	smndc1	95	76.050	ENSSHAG00000015189	SMNDC1	100	76.050	Sarcophilus_harrisii
ENSORLG00000005934	smndc1	95	78.151	ENSSFOG00015008311	smndc1	100	78.151	Scleropages_formosus
ENSORLG00000005934	smndc1	95	82.773	ENSSMAG00000020118	smndc1	100	82.773	Scophthalmus_maximus
ENSORLG00000005934	smndc1	95	84.454	ENSSDUG00000015330	smndc1	100	84.454	Seriola_dumerili
ENSORLG00000005934	smndc1	95	84.454	ENSSLDG00000017325	smndc1	100	84.454	Seriola_lalandi_dorsalis
ENSORLG00000005934	smndc1	95	76.050	ENSSARG00000006063	SMNDC1	100	76.050	Sorex_araneus
ENSORLG00000005934	smndc1	95	76.050	ENSSPUG00000004574	SMNDC1	100	76.050	Sphenodon_punctatus
ENSORLG00000005934	smndc1	95	83.613	ENSSPAG00000000338	smndc1	100	83.613	Stegastes_partitus
ENSORLG00000005934	smndc1	95	76.050	ENSSSCG00000030507	SMNDC1	100	76.050	Sus_scrofa
ENSORLG00000005934	smndc1	95	75.630	ENSTGUG00000010599	SMNDC1	100	75.630	Taeniopygia_guttata
ENSORLG00000005934	smndc1	95	81.933	ENSTRUG00000023281	smndc1	100	81.933	Takifugu_rubripes
ENSORLG00000005934	smndc1	95	81.513	ENSTNIG00000013331	smndc1	100	81.513	Tetraodon_nigroviridis
ENSORLG00000005934	smndc1	95	76.050	ENSTBEG00000014337	SMNDC1	100	76.050	Tupaia_belangeri
ENSORLG00000005934	smndc1	95	76.050	ENSUAMG00000008142	SMNDC1	100	76.050	Ursus_americanus
ENSORLG00000005934	smndc1	95	76.050	ENSUMAG00000023722	SMNDC1	100	76.050	Ursus_maritimus
ENSORLG00000005934	smndc1	79	75.758	ENSVPAG00000003402	SMNDC1	100	75.758	Vicugna_pacos
ENSORLG00000005934	smndc1	95	76.050	ENSVVUG00000007820	SMNDC1	100	76.050	Vulpes_vulpes
ENSORLG00000005934	smndc1	57	60.563	ENSXETG00000015415	SMNDC1	100	60.563	Xenopus_tropicalis
ENSORLG00000005934	smndc1	95	82.773	ENSXCOG00000009159	smndc1	100	82.773	Xiphophorus_couchianus
ENSORLG00000005934	smndc1	95	82.773	ENSXMAG00000012755	smndc1	100	82.773	Xiphophorus_maculatus