EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000005982 (Gene tree)
Gene ID: 101168303
Gene Symbol: cnot3b
Alias: -
Full Name: CCR4-NOT transcription complex subunit 3
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 36516 bases
Position: chr11:14718473-14754988
Accession: 101168303
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000028782	Not3	PF04065.15	5e-96	1	1
ENSORLP00000041268	Not3	PF04065.15	5.2e-96	1	1
ENSORLP00000007522	Not3	PF04065.15	2.3e-80	1	1
ENSORLP00000028782	NOT2_3_5	PF04153.18	1e-39	1	1
ENSORLP00000041268	NOT2_3_5	PF04153.18	1.9e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000038361	-	6007	-	ENSORLP00000041268	935 (aa)	-	-
ENSORLT00000007523	-	3499	-	ENSORLP00000007522	929 (aa)	-	H2LN95
ENSORLT00000046245	-	5929	XM_004073885	ENSORLP00000028782	909 (aa)	XP_004073933	UPI0002A492ED

Gene Model

Click here to download ENSORLG00000005982's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000005982's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000005982	cnot3b	68	92.105	ENSG00000088038	CNOT3	100	94.330	Homo_sapiens
ENSORLG00000005982	cnot3b	76	94.064	ENSAPOG00000015002	cnot3b	75	94.064	Acanthochromis_polyacanthus
ENSORLG00000005982	cnot3b	68	92.434	ENSAMEG00000004528	CNOT3	72	92.131	Ailuropoda_melanoleuca
ENSORLG00000005982	cnot3b	68	95.089	ENSACIG00000003652	cnot3b	76	95.089	Amphilophus_citrinellus
ENSORLG00000005982	cnot3b	85	93.277	ENSACIG00000006635	cnot3a	78	94.690	Amphilophus_citrinellus
ENSORLG00000005982	cnot3b	97	74.889	ENSAOCG00000018385	-	98	81.297	Amphiprion_ocellaris
ENSORLG00000005982	cnot3b	97	76.249	ENSAPEG00000002640	cnot3b	98	94.064	Amphiprion_percula
ENSORLG00000005982	cnot3b	100	81.217	ENSATEG00000015777	cnot3b	100	80.149	Anabas_testudineus
ENSORLG00000005982	cnot3b	84	77.694	ENSACAG00000016085	CNOT3	97	91.776	Anolis_carolinensis
ENSORLG00000005982	cnot3b	72	86.228	ENSANAG00000025756	CNOT3	74	91.803	Aotus_nancymaae
ENSORLG00000005982	cnot3b	100	81.055	ENSACLG00000016702	cnot3b	100	81.398	Astatotilapia_calliptera
ENSORLG00000005982	cnot3b	100	70.247	ENSAMXG00000009447	cnot3b	70	90.909	Astyanax_mexicanus
ENSORLG00000005982	cnot3b	100	67.961	ENSAMXG00000012359	cnot3a	64	59.259	Astyanax_mexicanus
ENSORLG00000005982	cnot3b	68	92.105	ENSBTAG00000014900	CNOT3	72	91.803	Bos_taurus
ENSORLG00000005982	cnot3b	72	86.527	ENSCJAG00000001094	CNOT3	71	91.803	Callithrix_jacchus
ENSORLG00000005982	cnot3b	76	78.010	ENSCAFG00000002699	CNOT3	71	91.803	Canis_familiaris
ENSORLG00000005982	cnot3b	76	78.010	ENSCAFG00020018359	CNOT3	71	91.803	Canis_lupus_dingo
ENSORLG00000005982	cnot3b	69	90.099	ENSCHIG00000015302	CNOT3	73	89.803	Capra_hircus
ENSORLG00000005982	cnot3b	68	92.105	ENSTSYG00000008058	CNOT3	72	91.803	Carlito_syrichta
ENSORLG00000005982	cnot3b	73	84.257	ENSCAPG00000009533	CNOT3	72	91.803	Cavia_aperea
ENSORLG00000005982	cnot3b	79	84.257	ENSCPOG00000020741	CNOT3	72	91.803	Cavia_porcellus
ENSORLG00000005982	cnot3b	72	86.228	ENSCCAG00000036290	CNOT3	75	91.803	Cebus_capucinus
ENSORLG00000005982	cnot3b	68	92.105	ENSCATG00000030324	CNOT3	72	91.803	Cercocebus_atys
ENSORLG00000005982	cnot3b	72	84.257	ENSCLAG00000003302	CNOT3	100	86.585	Chinchilla_lanigera
ENSORLG00000005982	cnot3b	68	92.105	ENSCSAG00000001900	CNOT3	72	91.803	Chlorocebus_sabaeus
ENSORLG00000005982	cnot3b	78	92.182	ENSCPBG00000011655	CNOT3	75	92.459	Chrysemys_picta_bellii
ENSORLG00000005982	cnot3b	76	57.193	ENSCING00000000293	-	66	71.239	Ciona_intestinalis
ENSORLG00000005982	cnot3b	68	92.105	ENSCANG00000013408	CNOT3	72	91.803	Colobus_angolensis_palliatus
ENSORLG00000005982	cnot3b	73	84.884	ENSCGRG00001000855	Cnot3	72	92.131	Cricetulus_griseus_chok1gshd
ENSORLG00000005982	cnot3b	90	82.143	ENSCSEG00000016892	cnot3b	71	83.333	Cynoglossus_semilaevis
ENSORLG00000005982	cnot3b	100	80.239	ENSCVAG00000022122	cnot3b	100	79.632	Cyprinodon_variegatus
ENSORLG00000005982	cnot3b	100	65.561	ENSDARG00000007135	cnot3a	100	65.838	Danio_rerio
ENSORLG00000005982	cnot3b	68	91.776	ENSDNOG00000045972	CNOT3	72	91.475	Dasypus_novemcinctus
ENSORLG00000005982	cnot3b	68	92.105	ENSDORG00000008021	Cnot3	100	81.609	Dipodomys_ordii
ENSORLG00000005982	cnot3b	52	100.000	ENSETEG00000006305	CNOT3	59	100.000	Echinops_telfairi
ENSORLG00000005982	cnot3b	68	70.779	ENSEBUG00000010437	cnot3a	96	68.182	Eptatretus_burgeri
ENSORLG00000005982	cnot3b	68	92.105	ENSEASG00005021591	CNOT3	71	91.803	Equus_asinus_asinus
ENSORLG00000005982	cnot3b	68	92.105	ENSECAG00000023181	CNOT3	71	91.803	Equus_caballus
ENSORLG00000005982	cnot3b	100	63.272	ENSELUG00000014743	cnot3a	77	55.027	Esox_lucius
ENSORLG00000005982	cnot3b	74	82.203	ENSFCAG00000014042	CNOT3	72	91.803	Felis_catus
ENSORLG00000005982	cnot3b	100	79.077	ENSFHEG00000001696	cnot3b	100	78.947	Fundulus_heteroclitus
ENSORLG00000005982	cnot3b	100	65.397	ENSFHEG00000023166	cnot3a	96	95.133	Fundulus_heteroclitus
ENSORLG00000005982	cnot3b	56	60.352	ENSGAFG00000013094	cnot3a	60	57.220	Gambusia_affinis
ENSORLG00000005982	cnot3b	100	80.958	ENSGAFG00000003459	cnot3b	100	80.326	Gambusia_affinis
ENSORLG00000005982	cnot3b	68	86.861	ENSGACG00000009395	cnot3b	55	86.861	Gasterosteus_aculeatus
ENSORLG00000005982	cnot3b	81	69.697	ENSGAGG00000012677	CNOT3	81	91.373	Gopherus_agassizii
ENSORLG00000005982	cnot3b	68	92.105	ENSGGOG00000012996	CNOT3	75	91.803	Gorilla_gorilla
ENSORLG00000005982	cnot3b	99	73.239	ENSHBUG00000019699	cnot3b	99	73.239	Haplochromis_burtoni
ENSORLG00000005982	cnot3b	73	83.918	ENSHGLG00000008821	CNOT3	100	81.609	Heterocephalus_glaber_female
ENSORLG00000005982	cnot3b	61	84.231	ENSHGLG00100006181	CNOT3	100	81.609	Heterocephalus_glaber_male
ENSORLG00000005982	cnot3b	86	77.880	ENSIPUG00000000167	cnot3	96	60.923	Ictalurus_punctatus
ENSORLG00000005982	cnot3b	68	92.105	ENSSTOG00000028248	CNOT3	72	91.803	Ictidomys_tridecemlineatus
ENSORLG00000005982	cnot3b	72	85.088	ENSJJAG00000014594	Cnot3	100	81.609	Jaculus_jaculus
ENSORLG00000005982	cnot3b	100	81.818	ENSKMAG00000018723	cnot3b	100	81.514	Kryptolebias_marmoratus
ENSORLG00000005982	cnot3b	100	65.948	ENSKMAG00000004863	cnot3a	70	88.462	Kryptolebias_marmoratus
ENSORLG00000005982	cnot3b	54	90.157	ENSLBEG00000017296	cnot3a	66	90.157	Labrus_bergylta
ENSORLG00000005982	cnot3b	96	78.420	ENSLBEG00000018278	cnot3b	100	78.052	Labrus_bergylta
ENSORLG00000005982	cnot3b	69	91.447	ENSLACG00000009742	CNOT3	75	90.554	Latimeria_chalumnae
ENSORLG00000005982	cnot3b	55	95.752	ENSLOCG00000000005	cnot3b	79	95.752	Lepisosteus_oculatus
ENSORLG00000005982	cnot3b	68	91.148	ENSLAFG00000022133	CNOT3	72	90.850	Loxodonta_africana
ENSORLG00000005982	cnot3b	68	92.105	ENSMFAG00000040073	CNOT3	72	91.803	Macaca_fascicularis
ENSORLG00000005982	cnot3b	61	92.437	ENSMMUG00000009698	CNOT3	100	98.039	Macaca_mulatta
ENSORLG00000005982	cnot3b	68	92.105	ENSMNEG00000036750	CNOT3	72	91.803	Macaca_nemestrina
ENSORLG00000005982	cnot3b	68	92.105	ENSMLEG00000036579	CNOT3	71	91.803	Mandrillus_leucophaeus
ENSORLG00000005982	cnot3b	100	81.425	ENSMZEG00005002466	cnot3b	100	82.093	Maylandia_zebra
ENSORLG00000005982	cnot3b	73	84.884	ENSMAUG00000014996	Cnot3	72	92.131	Mesocricetus_auratus
ENSORLG00000005982	cnot3b	72	86.228	ENSMICG00000002370	CNOT3	71	91.803	Microcebus_murinus
ENSORLG00000005982	cnot3b	70	93.590	ENSMMOG00000013086	cnot3b	71	93.805	Mola_mola
ENSORLG00000005982	cnot3b	69	78.042	ENSMODG00000004066	CNOT3	72	91.803	Monodelphis_domestica
ENSORLG00000005982	cnot3b	70	93.151	ENSMALG00000004936	cnot3b	92	93.151	Monopterus_albus
ENSORLG00000005982	cnot3b	73	85.131	MGP_CAROLIEiJ_G0029095	Cnot3	100	97.000	Mus_caroli
ENSORLG00000005982	cnot3b	73	85.131	ENSMUSG00000035632	Cnot3	100	97.000	Mus_musculus
ENSORLG00000005982	cnot3b	73	84.840	MGP_PahariEiJ_G0020964	Cnot3	100	97.000	Mus_pahari
ENSORLG00000005982	cnot3b	73	85.131	MGP_SPRETEiJ_G0030148	Cnot3	100	97.000	Mus_spretus
ENSORLG00000005982	cnot3b	73	84.503	ENSMPUG00000010352	CNOT3	72	91.803	Mustela_putorius_furo
ENSORLG00000005982	cnot3b	72	84.503	ENSNGAG00000013266	Cnot3	72	91.803	Nannospalax_galili
ENSORLG00000005982	cnot3b	91	78.116	ENSNBRG00000003336	cnot3b	71	92.237	Neolamprologus_brichardi
ENSORLG00000005982	cnot3b	68	92.105	ENSNLEG00000006272	CNOT3	69	91.803	Nomascus_leucogenys
ENSORLG00000005982	cnot3b	73	84.548	ENSODEG00000000705	CNOT3	100	89.873	Octodon_degus
ENSORLG00000005982	cnot3b	100	80.865	ENSONIG00000007047	cnot3b	100	82.181	Oreochromis_niloticus
ENSORLG00000005982	cnot3b	72	84.795	ENSOCUG00000007691	CNOT3	72	91.803	Oryctolagus_cuniculus
ENSORLG00000005982	cnot3b	100	98.463	ENSORLG00020005779	cnot3b	100	98.463	Oryzias_latipes_hni
ENSORLG00000005982	cnot3b	100	98.470	ENSORLG00015019021	cnot3b	100	98.470	Oryzias_latipes_hsok
ENSORLG00000005982	cnot3b	100	92.645	ENSOMEG00000015557	cnot3b	100	91.438	Oryzias_melastigma
ENSORLG00000005982	cnot3b	88	84.746	ENSOMEG00000010309	cnot3a	100	65.885	Oryzias_melastigma
ENSORLG00000005982	cnot3b	73	84.840	ENSOGAG00000006945	CNOT3	71	91.803	Otolemur_garnettii
ENSORLG00000005982	cnot3b	68	92.105	ENSPPAG00000002748	CNOT3	75	91.803	Pan_paniscus
ENSORLG00000005982	cnot3b	74	82.203	ENSPPRG00000011705	CNOT3	72	91.803	Panthera_pardus
ENSORLG00000005982	cnot3b	77	75.188	ENSPTIG00000008781	CNOT3	91	92.282	Panthera_tigris_altaica
ENSORLG00000005982	cnot3b	68	92.105	ENSPTRG00000011444	CNOT3	75	91.803	Pan_troglodytes
ENSORLG00000005982	cnot3b	68	92.105	ENSPTRG00000046717	-	75	91.803	Pan_troglodytes
ENSORLG00000005982	cnot3b	68	92.105	ENSPANG00000009375	CNOT3	72	91.803	Papio_anubis
ENSORLG00000005982	cnot3b	100	66.737	ENSPKIG00000011733	CNOT3	69	61.017	Paramormyrops_kingsleyae
ENSORLG00000005982	cnot3b	68	97.009	ENSPKIG00000015967	-	98	97.345	Paramormyrops_kingsleyae
ENSORLG00000005982	cnot3b	98	67.517	ENSPMGG00000022539	cnot3b	99	67.111	Periophthalmus_magnuspinnatus
ENSORLG00000005982	cnot3b	73	85.131	ENSPEMG00000024185	Cnot3	72	92.131	Peromyscus_maniculatus_bairdii
ENSORLG00000005982	cnot3b	69	91.776	ENSPCIG00000023018	CNOT3	89	91.475	Phascolarctos_cinereus
ENSORLG00000005982	cnot3b	100	81.352	ENSPFOG00000007168	cnot3b	100	81.976	Poecilia_formosa
ENSORLG00000005982	cnot3b	96	64.634	ENSPFOG00000008693	cnot3a	71	87.500	Poecilia_formosa
ENSORLG00000005982	cnot3b	100	81.352	ENSPLAG00000013457	cnot3b	100	81.976	Poecilia_latipinna
ENSORLG00000005982	cnot3b	100	82.481	ENSPMEG00000010184	cnot3b	100	81.630	Poecilia_mexicana
ENSORLG00000005982	cnot3b	68	94.017	ENSPREG00000007592	cnot3a	100	88.281	Poecilia_reticulata
ENSORLG00000005982	cnot3b	99	76.022	ENSPREG00000000662	cnot3b	97	77.178	Poecilia_reticulata
ENSORLG00000005982	cnot3b	68	91.776	ENSPPYG00000010372	CNOT3	71	91.475	Pongo_abelii
ENSORLG00000005982	cnot3b	51	94.068	ENSPCAG00000011999	CNOT3	56	94.068	Procavia_capensis
ENSORLG00000005982	cnot3b	72	86.228	ENSPCOG00000017673	CNOT3	74	91.803	Propithecus_coquereli
ENSORLG00000005982	cnot3b	74	80.791	ENSPVAG00000015564	CNOT3	70	90.820	Pteropus_vampyrus
ENSORLG00000005982	cnot3b	99	73.781	ENSPNYG00000003358	cnot3b	99	73.348	Pundamilia_nyererei
ENSORLG00000005982	cnot3b	79	84.532	ENSPNAG00000017679	cnot3a	63	93.333	Pygocentrus_nattereri
ENSORLG00000005982	cnot3b	100	72.530	ENSPNAG00000027459	cnot3b	100	72.331	Pygocentrus_nattereri
ENSORLG00000005982	cnot3b	73	84.840	ENSRNOG00000053234	Cnot3	72	92.131	Rattus_norvegicus
ENSORLG00000005982	cnot3b	68	92.105	ENSRBIG00000031025	CNOT3	72	91.803	Rhinopithecus_bieti
ENSORLG00000005982	cnot3b	68	92.105	ENSRROG00000003872	CNOT3	73	91.803	Rhinopithecus_roxellana
ENSORLG00000005982	cnot3b	72	86.527	ENSSBOG00000030268	CNOT3	75	91.803	Saimiri_boliviensis_boliviensis
ENSORLG00000005982	cnot3b	100	72.216	ENSSFOG00015000248	cnot3	57	60.180	Scleropages_formosus
ENSORLG00000005982	cnot3b	100	79.574	ENSSMAG00000016031	cnot3b	60	73.619	Scophthalmus_maximus
ENSORLG00000005982	cnot3b	84	94.068	ENSSDUG00000008181	cnot3a	60	58.140	Seriola_dumerili
ENSORLG00000005982	cnot3b	100	81.652	ENSSPAG00000001429	cnot3b	100	81.779	Stegastes_partitus
ENSORLG00000005982	cnot3b	86	90.945	ENSSPAG00000003858	cnot3a	57	90.945	Stegastes_partitus
ENSORLG00000005982	cnot3b	68	92.105	ENSSSCG00000003264	CNOT3	71	91.803	Sus_scrofa
ENSORLG00000005982	cnot3b	77	70.516	ENSTRUG00000007248	cnot3b	91	90.722	Takifugu_rubripes
ENSORLG00000005982	cnot3b	68	92.434	ENSUAMG00000005234	CNOT3	72	92.131	Ursus_americanus
ENSORLG00000005982	cnot3b	68	82.267	ENSUMAG00000010934	CNOT3	86	91.339	Ursus_maritimus
ENSORLG00000005982	cnot3b	76	78.010	ENSVVUG00000008239	CNOT3	70	91.803	Vulpes_vulpes
ENSORLG00000005982	cnot3b	81	90.196	ENSXETG00000003166	cnot3	75	90.615	Xenopus_tropicalis
ENSORLG00000005982	cnot3b	96	76.517	ENSXCOG00000018976	cnot3b	99	76.655	Xiphophorus_couchianus
ENSORLG00000005982	cnot3b	100	81.630	ENSXMAG00000014176	cnot3b	100	81.670	Xiphophorus_maculatus