EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSORLG00000006431 (Gene tree)
Gene ID
101160848
Gene Symbol
polr2a
Alias
-
Full Name
RNA polymerase II subunit A
Gene Type
protein_coding
Species
Oryzias_latipes
Status
putative
Strand
Minus strand
Length
14750 bases
Position
chr18:14589308-14604057
Accession
101160848
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00000008074RNA_pol_Rpb1_5PF04998.173.3e-10111
ENSORLP00000038121RNA_pol_Rpb1_5PF04998.173.5e-10111
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-30135
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-30235
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-30335
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-30435
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-30535
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-30635
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-30735
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-30835
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-30935
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-301035
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-301135
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-301235
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-301335
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-301435
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-301535
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-301635
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-301735
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-301835
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-301935
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-302035
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-302135
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-302235
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-302335
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-302435
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-302535
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-302635
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-302735
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-302835
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-302935
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-303035
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-303135
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-303235
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-303335
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-303435
ENSORLP00000008074RNA_pol_Rpb1_RPF05001.136.4e-303535
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-24133
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-24233
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-24333
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-24433
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-24533
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-24633
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-24733
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-24833
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-24933
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-241033
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-241133
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-241233
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-241333
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-241433
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-241533
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-241633
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-241733
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-241833
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-241933
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-242033
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-242133
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-242233
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-242333
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-242433
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-242533
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-242633
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-242733
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-242833
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-242933
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-243033
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-243133
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-243233
ENSORLP00000038121RNA_pol_Rpb1_RPF05001.131.1e-243333
ENSORLP00000008074RNA_pol_Rpb1_4PF05000.171.4e-3711
ENSORLP00000038121RNA_pol_Rpb1_4PF05000.171.5e-3711
ENSORLP00000008074RNA_pol_Rpb1_2PF00623.206.7e-7511
ENSORLP00000038121RNA_pol_Rpb1_2PF00623.206.9e-7511
ENSORLP00000008074RNA_pol_Rpb1_3PF04983.183.1e-5011
ENSORLP00000038121RNA_pol_Rpb1_3PF04983.183.3e-5011
ENSORLP00000008074RNA_pol_Rpb1_1PF04997.121.7e-10711
ENSORLP00000038121RNA_pol_Rpb1_1PF04997.121.8e-10711
ENSORLP00000008074RNA_pol_Rpb1_7PF04990.127e-5511
ENSORLP00000038121RNA_pol_Rpb1_7PF04990.127.1e-5511
ENSORLP00000008074RNA_pol_Rpb1_6PF04992.149.8e-6811
ENSORLP00000038121RNA_pol_Rpb1_6PF04992.141e-6711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00000039462-8160XM_023965809ENSORLP000000381211966 (aa)XP_023821577UPI000CE24281
ENSORLT00000008075-5787-ENSORLP000000080741928 (aa)-H2LPT8
Gene Model
Click here to download ENSORLG00000006431's gene model file
Pathways
Pathway IDPathway NameSource
ola03020RNA polymeraseKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000006431's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSORLG00000006431polr2a6838.268ENSORLG00000008958polr3a9138.268
ENSORLG00000006431polr2a5734.286ENSORLG00000008753polr1a6734.286
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00000006431polr2a8798.263ENSAPOG00000006552polr2a9098.263Acanthochromis_polyacanthus
ENSORLG00000006431polr2a8293.928ENSAMEG00000016265-8293.936Ailuropoda_melanoleuca
ENSORLG00000006431polr2a10098.548ENSACIG00000015982polr2a10098.548Amphilophus_citrinellus
ENSORLG00000006431polr2a10096.500ENSAOCG00000004255polr2a9398.475Amphiprion_ocellaris
ENSORLG00000006431polr2a10098.755ENSAPEG00000012623polr2a10098.755Amphiprion_percula
ENSORLG00000006431polr2a10098.496ENSATEG00000019644polr2a10098.496Anabas_testudineus
ENSORLG00000006431polr2a8294.658ENSACAG00000014561POLR2A8294.665Anolis_carolinensis
ENSORLG00000006431polr2a8294.289ENSANAG00000020093-8294.413Aotus_nancymaae
ENSORLG00000006431polr2a10098.288ENSACLG00000006735polr2a10098.288Astatotilapia_calliptera
ENSORLG00000006431polr2a10097.873ENSAMXG00000020046polr2a10097.873Astyanax_mexicanus
ENSORLG00000006431polr2a8294.289ENSBTAG00000046765POLR2A8294.296Bos_taurus
ENSORLG00000006431polr2a9871.429WBGene00000123ama-19979.612Caenorhabditis_elegans
ENSORLG00000006431polr2a8694.227ENSCAFG00000016532POLR2A9994.234Canis_familiaris
ENSORLG00000006431polr2a8293.362ENSCAFG00020007929-8293.371Canis_lupus_dingo
ENSORLG00000006431polr2a8294.289ENSCHIG00000027173-8294.296Capra_hircus
ENSORLG00000006431polr2a9291.923ENSTSYG00000012803-8591.584Carlito_syrichta
ENSORLG00000006431polr2a9890.828ENSCAPG00000001882-10093.363Cavia_aperea
ENSORLG00000006431polr2a9988.659ENSCPOG00000014812-10093.118Cavia_porcellus
ENSORLG00000006431polr2a8294.289ENSCCAG00000020938-8294.413Cebus_capucinus
ENSORLG00000006431polr2a8294.289ENSCATG00000013680-8294.296Cercocebus_atys
ENSORLG00000006431polr2a8294.165ENSCLAG00000012196-8294.286Chinchilla_lanigera
ENSORLG00000006431polr2a8285.503ENSCSAG00000011644-8285.521Chlorocebus_sabaeus
ENSORLG00000006431polr2a9083.901ENSCPBG00000012697POLR2A9985.724Chrysemys_picta_bellii
ENSORLG00000006431polr2a9876.671ENSCING00000007884-9977.228Ciona_intestinalis
ENSORLG00000006431polr2a9879.630ENSCSAVG00000008334-9981.731Ciona_savignyi
ENSORLG00000006431polr2a8293.606ENSCANG00000010622-8293.614Colobus_angolensis_palliatus
ENSORLG00000006431polr2a8189.129ENSCGRG00001003538Polr2a8586.957Cricetulus_griseus_chok1gshd
ENSORLG00000006431polr2a8290.596ENSCGRG00000012105Polr2a9390.564Cricetulus_griseus_crigri
ENSORLG00000006431polr2a9997.405ENSCSEG00000002635polr2a10097.405Cynoglossus_semilaevis
ENSORLG00000006431polr2a10098.678ENSCVAG00000005156polr2a10098.678Cyprinodon_variegatus
ENSORLG00000006431polr2a10097.255ENSDARG00000099966polr2a10097.255Danio_rerio
ENSORLG00000006431polr2a8291.372ENSDNOG00000016482-8290.746Dasypus_novemcinctus
ENSORLG00000006431polr2a8294.289ENSDORG00000008667Polr2a8294.413Dipodomys_ordii
ENSORLG00000006431polr2a9969.989FBgn0003277RpII2159974.284Drosophila_melanogaster
ENSORLG00000006431polr2a9490.163ENSETEG00000002540-8791.267Echinops_telfairi
ENSORLG00000006431polr2a8287.149ENSEBUG00000013967polr2a8287.135Eptatretus_burgeri
ENSORLG00000006431polr2a8292.241ENSEASG00005019114-8392.250Equus_asinus_asinus
ENSORLG00000006431polr2a8294.289ENSECAG00000018485POLR2A8294.296Equus_caballus
ENSORLG00000006431polr2a8594.126ENSEEUG00000001154-9594.126Erinaceus_europaeus
ENSORLG00000006431polr2a8895.079ENSELUG00000014284polr2a8495.079Esox_lucius
ENSORLG00000006431polr2a8294.351ENSFDAG00000008287-8294.358Fukomys_damarensis
ENSORLG00000006431polr2a9998.225ENSFHEG00000001768polr2a10098.225Fundulus_heteroclitus
ENSORLG00000006431polr2a9992.892ENSGMOG00000007725polr2a10092.892Gadus_morhua
ENSORLG00000006431polr2a99100.000ENSGAFG00000005389polr2a10093.785Gambusia_affinis
ENSORLG00000006431polr2a9993.591ENSGACG00000019366polr2a10093.366Gasterosteus_aculeatus
ENSORLG00000006431polr2a8292.198ENSGGOG00000014800-9692.386Gorilla_gorilla
ENSORLG00000006431polr2a9998.231ENSHBUG00000018937polr2a10098.216Haplochromis_burtoni
ENSORLG00000006431polr2a8294.351ENSHGLG00000012381POLR2A8294.476Heterocephalus_glaber_female
ENSORLG00000006431polr2a8294.351ENSHGLG00100014843POLR2A8294.476Heterocephalus_glaber_male
ENSORLG00000006431polr2a10097.915ENSHCOG00000011874polr2a10097.915Hippocampus_comes
ENSORLG00000006431polr2a10097.407ENSIPUG00000002613Polr2a10097.407Ictalurus_punctatus
ENSORLG00000006431polr2a8294.289ENSSTOG00000001304-8294.413Ictidomys_tridecemlineatus
ENSORLG00000006431polr2a8294.289ENSJJAG00000013049Polr2a8294.413Jaculus_jaculus
ENSORLG00000006431polr2a82100.000ENSKMAG00000016343polr2a86100.000Kryptolebias_marmoratus
ENSORLG00000006431polr2a9998.236ENSLBEG00000027652polr2a10098.236Labrus_bergylta
ENSORLG00000006431polr2a8085.326ENSLACG00000012071POLR2A8185.398Latimeria_chalumnae
ENSORLG00000006431polr2a8997.038ENSLOCG00000013863polr2a9796.586Lepisosteus_oculatus
ENSORLG00000006431polr2a9991.059ENSLAFG00000008626-9794.296Loxodonta_africana
ENSORLG00000006431polr2a5192.646ENSMFAG00000007042-9992.646Macaca_fascicularis
ENSORLG00000006431polr2a8294.289ENSMMUG00000023620-9194.296Macaca_mulatta
ENSORLG00000006431polr2a8293.855ENSMNEG00000040407-8293.862Macaca_nemestrina
ENSORLG00000006431polr2a8089.883ENSMLEG00000030263-9992.646Mandrillus_leucophaeus
ENSORLG00000006431polr2a10098.220ENSMAMG00000003351polr2a10098.220Mastacembelus_armatus
ENSORLG00000006431polr2a10098.271ENSMZEG00005021429polr2a10098.271Maylandia_zebra
ENSORLG00000006431polr2a5193.680ENSMAUG00000021055-9993.680Mesocricetus_auratus
ENSORLG00000006431polr2a8294.227ENSMICG00000013372-9893.040Microcebus_murinus
ENSORLG00000006431polr2a9991.942ENSMOCG00000018279Polr2a10091.952Microtus_ochrogaster
ENSORLG00000006431polr2a9097.146ENSMMOG00000012515polr2a9297.146Mola_mola
ENSORLG00000006431polr2a8294.041ENSMODG00000007009-8294.048Monodelphis_domestica
ENSORLG00000006431polr2a9197.831ENSMALG00000008716polr2a9997.840Monopterus_albus
ENSORLG00000006431polr2a8294.289MGP_CAROLIEiJ_G0016587Polr2a8294.413Mus_caroli
ENSORLG00000006431polr2a8294.289ENSMUSG00000005198Polr2a8294.413Mus_musculus
ENSORLG00000006431polr2a8292.151MGP_PahariEiJ_G0017718Polr2a8292.160Mus_pahari
ENSORLG00000006431polr2a8294.289MGP_SPRETEiJ_G0017423Polr2a8294.413Mus_spretus
ENSORLG00000006431polr2a8294.165ENSMPUG00000009648-8294.172Mustela_putorius_furo
ENSORLG00000006431polr2a8293.676ENSMLUG00000009088-8293.684Myotis_lucifugus
ENSORLG00000006431polr2a8294.289ENSNGAG00000002543Polr2a8294.413Nannospalax_galili
ENSORLG00000006431polr2a10098.392ENSNBRG00000002005polr2a10098.392Neolamprologus_brichardi
ENSORLG00000006431polr2a8194.406ENSNLEG00000009460-8294.413Nomascus_leucogenys
ENSORLG00000006431polr2a9495.098ENSMEUG00000008611-9686.775Notamacropus_eugenii
ENSORLG00000006431polr2a8093.999ENSOPRG00000015116-9993.999Ochotona_princeps
ENSORLG00000006431polr2a8794.122ENSODEG00000017674-8589.870Octodon_degus
ENSORLG00000006431polr2a10098.423ENSONIG00000009231polr2a10098.423Oreochromis_niloticus
ENSORLG00000006431polr2a9990.230ENSOCUG00000017929-10094.172Oryctolagus_cuniculus
ENSORLG00000006431polr2a100100.000ENSORLG00020010235polr2a100100.000Oryzias_latipes_hni
ENSORLG00000006431polr2a10099.898ENSORLG00015007075polr2a10099.898Oryzias_latipes_hsok
ENSORLG00000006431polr2a9897.324ENSOMEG00000010713polr2a10099.751Oryzias_melastigma
ENSORLG00000006431polr2a8294.289ENSOGAG00000033608-8294.296Otolemur_garnettii
ENSORLG00000006431polr2a9194.289ENSOARG00000013874-10094.296Ovis_aries
ENSORLG00000006431polr2a8194.306ENSPPAG00000043734-8989.969Pan_paniscus
ENSORLG00000006431polr2a8194.406ENSPTRG00000008691POLR2A8294.413Pan_troglodytes
ENSORLG00000006431polr2a8293.606ENSPANG00000024099-8293.714Papio_anubis
ENSORLG00000006431polr2a8195.749ENSPKIG00000005727polr2a8595.749Paramormyrops_kingsleyae
ENSORLG00000006431polr2a9892.649ENSPSIG00000014006POLR2A10092.565Pelodiscus_sinensis
ENSORLG00000006431polr2a10097.080ENSPMGG00000019734polr2a10097.080Periophthalmus_magnuspinnatus
ENSORLG00000006431polr2a8294.289ENSPEMG00000012521Polr2a8294.413Peromyscus_maniculatus_bairdii
ENSORLG00000006431polr2a8694.045ENSPCIG00000028851-8294.045Phascolarctos_cinereus
ENSORLG00000006431polr2a9998.681ENSPFOG00000007890polr2a9998.681Poecilia_formosa
ENSORLG00000006431polr2a9998.681ENSPLAG00000007399polr2a9998.681Poecilia_latipinna
ENSORLG00000006431polr2a10098.654ENSPMEG00000002071polr2a9998.681Poecilia_mexicana
ENSORLG00000006431polr2a10098.779ENSPREG00000013122polr2a10098.779Poecilia_reticulata
ENSORLG00000006431polr2a8294.289ENSPPYG00000007924-8294.296Pongo_abelii
ENSORLG00000006431polr2a7494.737ENSPCAG00000006951-7494.737Procavia_capensis
ENSORLG00000006431polr2a8194.406ENSPCOG00000025260-8294.413Propithecus_coquereli
ENSORLG00000006431polr2a8293.979ENSPVAG00000005069-8293.986Pteropus_vampyrus
ENSORLG00000006431polr2a10098.321ENSPNYG00000022340polr2a10098.321Pundamilia_nyererei
ENSORLG00000006431polr2a10098.016ENSPNAG00000011237polr2a10098.016Pygocentrus_nattereri
ENSORLG00000006431polr2a8294.227ENSRNOG00000028834Polr2a8294.234Rattus_norvegicus
ENSORLG00000006431polr2a8293.917ENSRBIG00000002471-9193.924Rhinopithecus_bieti
ENSORLG00000006431polr2a8294.289ENSRROG00000029583-8993.428Rhinopithecus_roxellana
ENSORLG00000006431polr2a8450.338YDL140CRPO219983.544Saccharomyces_cerevisiae
ENSORLG00000006431polr2a8294.289ENSSBOG00000000808-8294.413Saimiri_boliviensis_boliviensis
ENSORLG00000006431polr2a9394.041ENSSHAG00000002858-8494.048Sarcophilus_harrisii
ENSORLG00000006431polr2a9997.513ENSSFOG00015023275polr2a10097.513Scleropages_formosus
ENSORLG00000006431polr2a10095.626ENSSMAG00000009137polr2a10095.117Scophthalmus_maximus
ENSORLG00000006431polr2a10098.340ENSSDUG00000020466polr2a10098.340Seriola_dumerili
ENSORLG00000006431polr2a10098.340ENSSLDG00000020613polr2a10098.340Seriola_lalandi_dorsalis
ENSORLG00000006431polr2a9787.919ENSSARG00000005875-9990.706Sorex_araneus
ENSORLG00000006431polr2a100100.000ENSSPAG00000016741polr2a95100.000Stegastes_partitus
ENSORLG00000006431polr2a8293.358ENSSSCG00000028278-8293.366Sus_scrofa
ENSORLG00000006431polr2a9892.002ENSTRUG00000012320polr2a8192.002Takifugu_rubripes
ENSORLG00000006431polr2a9596.402ENSTNIG00000010136polr2a10096.402Tetraodon_nigroviridis
ENSORLG00000006431polr2a7494.898ENSTBEG00000013294-5894.898Tupaia_belangeri
ENSORLG00000006431polr2a8292.613ENSTTRG00000014273-8292.622Tursiops_truncatus
ENSORLG00000006431polr2a9393.976ENSUAMG00000014866-10091.342Ursus_americanus
ENSORLG00000006431polr2a7491.757ENSUMAG00000015732-8389.385Ursus_maritimus
ENSORLG00000006431polr2a6598.370ENSVPAG00000008842-7698.370Vicugna_pacos
ENSORLG00000006431polr2a8294.227ENSVVUG00000027878-8394.234Vulpes_vulpes
ENSORLG00000006431polr2a8194.021ENSXETG00000012465polr2a8294.029Xenopus_tropicalis
ENSORLG00000006431polr2a9697.804ENSXCOG00000001804polr2a10097.804Xiphophorus_couchianus
ENSORLG00000006431polr2a10098.678ENSXMAG00000015687polr2a10098.678Xiphophorus_maculatus

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