EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000006581 (Gene tree)
Gene ID: 101163851
Gene Symbol: hdlbpb
Alias: -
Full Name: vigilin
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 23141 bases
Position: chr18:14672291-14695431
Accession: 101163851
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000008263	KH_1	PF00013.29	8.9e-186	1	14
ENSORLP00000008263	KH_1	PF00013.29	8.9e-186	2	14
ENSORLP00000008263	KH_1	PF00013.29	8.9e-186	3	14
ENSORLP00000008263	KH_1	PF00013.29	8.9e-186	4	14
ENSORLP00000008263	KH_1	PF00013.29	8.9e-186	5	14
ENSORLP00000008263	KH_1	PF00013.29	8.9e-186	6	14
ENSORLP00000008263	KH_1	PF00013.29	8.9e-186	7	14
ENSORLP00000008263	KH_1	PF00013.29	8.9e-186	8	14
ENSORLP00000008263	KH_1	PF00013.29	8.9e-186	9	14
ENSORLP00000008263	KH_1	PF00013.29	8.9e-186	10	14
ENSORLP00000008263	KH_1	PF00013.29	8.9e-186	11	14
ENSORLP00000008263	KH_1	PF00013.29	8.9e-186	12	14
ENSORLP00000008263	KH_1	PF00013.29	8.9e-186	13	14
ENSORLP00000008263	KH_1	PF00013.29	8.9e-186	14	14
ENSORLP00000035895	KH_1	PF00013.29	5.3e-185	1	14
ENSORLP00000035895	KH_1	PF00013.29	5.3e-185	2	14
ENSORLP00000035895	KH_1	PF00013.29	5.3e-185	3	14
ENSORLP00000035895	KH_1	PF00013.29	5.3e-185	4	14
ENSORLP00000035895	KH_1	PF00013.29	5.3e-185	5	14
ENSORLP00000035895	KH_1	PF00013.29	5.3e-185	6	14
ENSORLP00000035895	KH_1	PF00013.29	5.3e-185	7	14
ENSORLP00000035895	KH_1	PF00013.29	5.3e-185	8	14
ENSORLP00000035895	KH_1	PF00013.29	5.3e-185	9	14
ENSORLP00000035895	KH_1	PF00013.29	5.3e-185	10	14
ENSORLP00000035895	KH_1	PF00013.29	5.3e-185	11	14
ENSORLP00000035895	KH_1	PF00013.29	5.3e-185	12	14
ENSORLP00000035895	KH_1	PF00013.29	5.3e-185	13	14
ENSORLP00000035895	KH_1	PF00013.29	5.3e-185	14	14

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000042311	-	4123	XM_011487506	ENSORLP00000035895	1267 (aa)	XP_011485808	UPI0002A493AE
ENSORLT00000008264	-	3660	-	ENSORLP00000008263	1219 (aa)	-	H2LQC3

Gene Model

Click here to download ENSORLG00000006581's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000006581's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000006581	hdlbpb	100	71.061	ENSORLG00000002226	hdlbpa	100	70.827

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000006581	hdlbpb	100	95.347	ENSAPOG00000006904	hdlbpb	100	95.347	Acanthochromis_polyacanthus
ENSORLG00000006581	hdlbpb	100	90.259	ENSACIG00000016154	hdlbpb	100	90.259	Amphilophus_citrinellus
ENSORLG00000006581	hdlbpb	100	95.741	ENSAOCG00000004083	hdlbpb	100	95.741	Amphiprion_ocellaris
ENSORLG00000006581	hdlbpb	100	95.662	ENSAPEG00000012270	hdlbpb	100	95.662	Amphiprion_percula
ENSORLG00000006581	hdlbpb	100	94.558	ENSATEG00000019877	hdlbpb	100	94.558	Anabas_testudineus
ENSORLG00000006581	hdlbpb	100	82.084	ENSACAG00000003606	-	100	82.084	Anolis_carolinensis
ENSORLG00000006581	hdlbpb	100	95.268	ENSACLG00000006618	hdlbpb	100	95.268	Astatotilapia_calliptera
ENSORLG00000006581	hdlbpb	100	76.929	ENSAMXG00000019946	hdlbpb	100	77.008	Astyanax_mexicanus
ENSORLG00000006581	hdlbpb	100	94.238	ENSCSEG00000000955	hdlbpb	100	94.320	Cynoglossus_semilaevis
ENSORLG00000006581	hdlbpb	100	94.795	ENSCVAG00000005345	hdlbpb	100	94.795	Cyprinodon_variegatus
ENSORLG00000006581	hdlbpb	99	85.150	ENSDARG00000061864	hdlbpb	99	85.150	Danio_rerio
ENSORLG00000006581	hdlbpb	96	69.864	ENSEBUG00000005304	hdlbpb	95	70.598	Eptatretus_burgeri
ENSORLG00000006581	hdlbpb	100	68.375	ENSELUG00000019925	hdlbpb	100	77.455	Esox_lucius
ENSORLG00000006581	hdlbpb	100	32.473	ENSFHEG00000001701	hdlbpb	100	89.669	Fundulus_heteroclitus
ENSORLG00000006581	hdlbpb	96	86.741	ENSGMOG00000004522	hdlbpb	78	87.163	Gadus_morhua
ENSORLG00000006581	hdlbpb	100	94.953	ENSGAFG00000005278	hdlbpb	100	94.953	Gambusia_affinis
ENSORLG00000006581	hdlbpb	99	91.232	ENSGACG00000019361	hdlbpb	100	91.232	Gasterosteus_aculeatus
ENSORLG00000006581	hdlbpb	100	95.110	ENSHBUG00000018434	hdlbpb	100	95.110	Haplochromis_burtoni
ENSORLG00000006581	hdlbpb	100	84.543	ENSIPUG00000003291	HDLBP	100	84.817	Ictalurus_punctatus
ENSORLG00000006581	hdlbpb	100	95.426	ENSKMAG00000016562	hdlbpb	100	95.426	Kryptolebias_marmoratus
ENSORLG00000006581	hdlbpb	100	94.401	ENSLBEG00000027855	hdlbpb	100	94.401	Labrus_bergylta
ENSORLG00000006581	hdlbpb	100	85.649	ENSLACG00000007661	hdlbpb	90	85.649	Latimeria_chalumnae
ENSORLG00000006581	hdlbpb	100	82.492	ENSLOCG00000013909	hdlbpb	100	82.492	Lepisosteus_oculatus
ENSORLG00000006581	hdlbpb	100	95.110	ENSMAMG00000003035	hdlbpb	100	95.110	Mastacembelus_armatus
ENSORLG00000006581	hdlbpb	100	95.268	ENSMZEG00005021465	hdlbpb	100	95.268	Maylandia_zebra
ENSORLG00000006581	hdlbpb	100	93.370	ENSMMOG00000012525	hdlbpb	100	93.370	Mola_mola
ENSORLG00000006581	hdlbpb	100	93.375	ENSMALG00000008938	hdlbpb	100	93.375	Monopterus_albus
ENSORLG00000006581	hdlbpb	100	95.189	ENSNBRG00000002236	hdlbpb	100	95.189	Neolamprologus_brichardi
ENSORLG00000006581	hdlbpb	100	95.032	ENSONIG00000009211	hdlbpb	100	95.189	Oreochromis_niloticus
ENSORLG00000006581	hdlbpb	100	99.369	ENSORLG00020010012	hdlbpb	100	99.369	Oryzias_latipes_hni
ENSORLG00000006581	hdlbpb	100	99.448	ENSORLG00015006863	hdlbpb	100	99.448	Oryzias_latipes_hsok
ENSORLG00000006581	hdlbpb	100	97.632	ENSOMEG00000011131	hdlbpb	100	97.632	Oryzias_melastigma
ENSORLG00000006581	hdlbpb	100	87.214	ENSPKIG00000005966	hdlbpb	100	87.372	Paramormyrops_kingsleyae
ENSORLG00000006581	hdlbpb	89	91.389	ENSPMGG00000019853	hdlbpb	99	93.056	Periophthalmus_magnuspinnatus
ENSORLG00000006581	hdlbpb	96	75.110	ENSPMAG00000002131	hdlbpb	100	75.110	Petromyzon_marinus
ENSORLG00000006581	hdlbpb	92	63.787	ENSPMAG00000000249	-	99	63.666	Petromyzon_marinus
ENSORLG00000006581	hdlbpb	100	94.150	ENSPFOG00000008755	hdlbpb	100	94.150	Poecilia_formosa
ENSORLG00000006581	hdlbpb	100	95.032	ENSPLAG00000007055	hdlbpb	100	95.032	Poecilia_latipinna
ENSORLG00000006581	hdlbpb	100	94.953	ENSPMEG00000001952	hdlbpb	100	94.953	Poecilia_mexicana
ENSORLG00000006581	hdlbpb	100	94.716	ENSPREG00000012848	hdlbpb	100	94.716	Poecilia_reticulata
ENSORLG00000006581	hdlbpb	100	95.032	ENSPNYG00000022467	hdlbpb	100	95.032	Pundamilia_nyererei
ENSORLG00000006581	hdlbpb	100	86.740	ENSPNAG00000011104	hdlbpb	100	86.740	Pygocentrus_nattereri
ENSORLG00000006581	hdlbpb	100	86.977	ENSSFOG00015023199	hdlbpb	100	87.342	Scleropages_formosus
ENSORLG00000006581	hdlbpb	100	94.479	ENSSMAG00000008790	hdlbpb	100	94.479	Scophthalmus_maximus
ENSORLG00000006581	hdlbpb	100	95.426	ENSSDUG00000020694	hdlbpb	100	95.426	Seriola_dumerili
ENSORLG00000006581	hdlbpb	100	94.953	ENSSLDG00000020807	hdlbpb	100	94.953	Seriola_lalandi_dorsalis
ENSORLG00000006581	hdlbpb	100	82.399	ENSSPUG00000018688	-	100	82.399	Sphenodon_punctatus
ENSORLG00000006581	hdlbpb	100	95.584	ENSSPAG00000016969	hdlbpb	100	95.584	Stegastes_partitus
ENSORLG00000006581	hdlbpb	98	91.291	ENSTRUG00000012888	hdlbpb	99	91.291	Takifugu_rubripes
ENSORLG00000006581	hdlbpb	99	92.561	ENSTNIG00000002555	hdlbpb	100	92.561	Tetraodon_nigroviridis
ENSORLG00000006581	hdlbpb	100	66.930	ENSXCOG00000001797	hdlbpb	100	83.154	Xiphophorus_couchianus
ENSORLG00000006581	hdlbpb	100	94.243	ENSXMAG00000015633	hdlbpb	100	94.243	Xiphophorus_maculatus