EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000007055 (Gene tree)
Gene ID: 101158432
Gene Symbol: ncl
Alias: -
Full Name: nucleolin
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 9009 bases
Position: chr4:11718896-11727904
Accession: 101158432
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000008864	RRM_1	PF00076.22	2.3e-60	1	4
ENSORLP00000008864	RRM_1	PF00076.22	2.3e-60	2	4
ENSORLP00000008864	RRM_1	PF00076.22	2.3e-60	3	4
ENSORLP00000008864	RRM_1	PF00076.22	2.3e-60	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000008865	-	5108	XM_011473963	ENSORLP00000008864	732 (aa)	XP_011472265	H2LS06

Gene Model

Click here to download ENSORLG00000007055's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000007055's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000007055	ncl	55	36.842	ENSORLG00000004645	-	80	38.544

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000007055	ncl	55	42.143	ENSAPOG00000014534	-	65	42.105	Acanthochromis_polyacanthus
ENSORLG00000007055	ncl	66	83.571	ENSAPOG00000023888	ncl	54	87.151	Acanthochromis_polyacanthus
ENSORLG00000007055	ncl	72	77.926	ENSACIG00000013234	ncl	60	79.330	Amphilophus_citrinellus
ENSORLG00000007055	ncl	61	79.412	ENSAOCG00000003133	ncl	50	87.989	Amphiprion_ocellaris
ENSORLG00000007055	ncl	56	39.860	ENSAOCG00000014792	-	59	40.426	Amphiprion_ocellaris
ENSORLG00000007055	ncl	64	75.745	ENSAPEG00000002769	ncl	50	87.989	Amphiprion_percula
ENSORLG00000007055	ncl	56	40.093	ENSAPEG00000013612	-	59	40.691	Amphiprion_percula
ENSORLG00000007055	ncl	59	43.860	ENSATEG00000019862	-	78	44.327	Anabas_testudineus
ENSORLG00000007055	ncl	54	55.416	ENSAPLG00000012897	-	60	56.319	Anas_platyrhynchos
ENSORLG00000007055	ncl	64	68.966	ENSAMXG00000001647	ncl	83	72.241	Astyanax_mexicanus
ENSORLG00000007055	ncl	63	56.379	ENSCPBG00000016444	-	53	61.111	Chrysemys_picta_bellii
ENSORLG00000007055	ncl	52	81.201	ENSCSEG00000015089	ncl	55	81.492	Cynoglossus_semilaevis
ENSORLG00000007055	ncl	71	81.365	ENSCVAG00000012600	ncl	53	81.471	Cyprinodon_variegatus
ENSORLG00000007055	ncl	70	74.408	ENSDARG00000002710	ncl	82	76.699	Danio_rerio
ENSORLG00000007055	ncl	56	48.267	ENSDNOG00000040257	-	58	48.718	Dasypus_novemcinctus
ENSORLG00000007055	ncl	65	48.089	ENSEBUG00000016173	ncl	55	49.318	Eptatretus_burgeri
ENSORLG00000007055	ncl	58	46.948	ENSELUG00000022826	-	78	50.413	Esox_lucius
ENSORLG00000007055	ncl	57	73.882	ENSELUG00000006033	ncl	54	75.616	Esox_lucius
ENSORLG00000007055	ncl	51	77.867	ENSFHEG00000018000	ncl	65	75.000	Fundulus_heteroclitus
ENSORLG00000007055	ncl	52	69.110	ENSGMOG00000001341	ncl	57	67.945	Gadus_morhua
ENSORLG00000007055	ncl	51	56.579	ENSGALG00000032930	NCL	52	57.500	Gallus_gallus
ENSORLG00000007055	ncl	64	79.399	ENSGAFG00000015375	ncl	58	82.353	Gambusia_affinis
ENSORLG00000007055	ncl	85	64.062	ENSGACG00000008970	ncl	58	80.952	Gasterosteus_aculeatus
ENSORLG00000007055	ncl	62	54.526	ENSGAGG00000013330	-	53	61.389	Gopherus_agassizii
ENSORLG00000007055	ncl	58	76.815	ENSHBUG00000006869	ncl	51	79.330	Haplochromis_burtoni
ENSORLG00000007055	ncl	54	78.589	ENSHCOG00000010234	ncl	89	63.676	Hippocampus_comes
ENSORLG00000007055	ncl	57	84.964	ENSKMAG00000008111	ncl	52	86.704	Kryptolebias_marmoratus
ENSORLG00000007055	ncl	52	43.583	ENSLBEG00000014278	-	82	43.132	Labrus_bergylta
ENSORLG00000007055	ncl	60	42.637	ENSLBEG00000007915	-	64	43.733	Labrus_bergylta
ENSORLG00000007055	ncl	54	49.242	ENSLACG00000022167	-	76	51.821	Latimeria_chalumnae
ENSORLG00000007055	ncl	57	39.318	ENSMAMG00000003479	-	68	40.426	Mastacembelus_armatus
ENSORLG00000007055	ncl	88	78.355	ENSMAMG00000002086	ncl	55	77.974	Mastacembelus_armatus
ENSORLG00000007055	ncl	52	60.444	ENSMGAG00000008147	-	83	56.944	Meleagris_gallopavo
ENSORLG00000007055	ncl	54	84.295	ENSMMOG00000008553	ncl	84	84.295	Mola_mola
ENSORLG00000007055	ncl	62	53.333	ENSMODG00000002470	-	50	58.543	Monodelphis_domestica
ENSORLG00000007055	ncl	53	78.723	ENSNBRG00000000146	-	85	78.369	Neolamprologus_brichardi
ENSORLG00000007055	ncl	53	78.723	ENSNBRG00000001232	ncl	82	78.369	Neolamprologus_brichardi
ENSORLG00000007055	ncl	52	41.425	ENSONIG00000010631	-	93	40.720	Oreochromis_niloticus
ENSORLG00000007055	ncl	54	57.750	ENSOANG00000008732	-	56	61.756	Ornithorhynchus_anatinus
ENSORLG00000007055	ncl	58	35.506	ENSORLG00020003497	-	72	38.544	Oryzias_latipes_hni
ENSORLG00000007055	ncl	100	98.639	ENSORLG00020017943	ncl	100	98.639	Oryzias_latipes_hni
ENSORLG00000007055	ncl	57	37.063	ENSORLG00015006613	-	75	38.544	Oryzias_latipes_hsok
ENSORLG00000007055	ncl	71	95.227	ENSORLG00015013815	ncl	98	93.103	Oryzias_latipes_hsok
ENSORLG00000007055	ncl	51	38.205	ENSOMEG00000015864	-	79	38.544	Oryzias_melastigma
ENSORLG00000007055	ncl	64	75.829	ENSPKIG00000002604	ncl	51	79.109	Paramormyrops_kingsleyae
ENSORLG00000007055	ncl	52	58.974	ENSPSIG00000002361	-	50	60.665	Pelodiscus_sinensis
ENSORLG00000007055	ncl	64	79.274	ENSPFOG00000024205	ncl	50	83.106	Poecilia_formosa
ENSORLG00000007055	ncl	64	79.872	ENSPLAG00000024026	ncl	58	81.882	Poecilia_latipinna
ENSORLG00000007055	ncl	64	80.300	ENSPMEG00000006000	ncl	58	82.353	Poecilia_mexicana
ENSORLG00000007055	ncl	57	70.142	ENSPNAG00000006192	ncl	50	72.652	Pygocentrus_nattereri
ENSORLG00000007055	ncl	51	54.308	ENSSHAG00000002702	-	56	55.191	Sarcophilus_harrisii
ENSORLG00000007055	ncl	52	44.126	ENSSFOG00015013153	-	78	45.192	Scleropages_formosus
ENSORLG00000007055	ncl	74	71.882	ENSSFOG00015008583	ncl	56	77.159	Scleropages_formosus
ENSORLG00000007055	ncl	68	37.838	ENSSMAG00000007582	-	60	44.086	Scophthalmus_maximus
ENSORLG00000007055	ncl	90	67.015	ENSSMAG00000021241	ncl	51	84.765	Scophthalmus_maximus
ENSORLG00000007055	ncl	85	81.562	ENSSDUG00000006128	ncl	83	87.088	Seriola_dumerili
ENSORLG00000007055	ncl	62	39.915	ENSSDUG00000010922	-	68	43.164	Seriola_dumerili
ENSORLG00000007055	ncl	53	42.893	ENSSLDG00000015784	-	63	43.396	Seriola_lalandi_dorsalis
ENSORLG00000007055	ncl	51	60.154	ENSSPUG00000008244	-	55	61.157	Sphenodon_punctatus
ENSORLG00000007055	ncl	53	43.142	ENSSPAG00000001859	-	60	42.547	Stegastes_partitus
ENSORLG00000007055	ncl	53	86.525	ENSSPAG00000002637	ncl	82	86.525	Stegastes_partitus
ENSORLG00000007055	ncl	51	56.995	ENSTGUG00000009782	-	58	57.027	Taeniopygia_guttata
ENSORLG00000007055	ncl	57	78.487	ENSTRUG00000008185	ncl	53	81.717	Takifugu_rubripes
ENSORLG00000007055	ncl	84	60.789	ENSXETG00000009517	ncl	52	61.878	Xenopus_tropicalis
ENSORLG00000007055	ncl	50	41.316	ENSXCOG00000007369	-	87	41.192	Xiphophorus_couchianus
ENSORLG00000007055	ncl	53	51.553	ENSXCOG00000003524	ncl	87	65.495	Xiphophorus_couchianus
ENSORLG00000007055	ncl	52	85.039	ENSXMAG00000005914	ncl	50	85.286	Xiphophorus_maculatus