EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000007114 (Gene tree)
Gene ID: 101159281
Gene Symbol: prdm12b
Alias: -
Full Name: PR/SET domain 12
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 3114 bases
Position: chr12:12256751-12259864
Accession: 101159281
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000008922	zf-C2H2	PF00096.26	7.8e-13	1	2
ENSORLP00000008922	zf-C2H2	PF00096.26	7.8e-13	2	2
ENSORLP00000008922	zf-met	PF12874.7	8.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000008923	-	1140	XM_004074755	ENSORLP00000008922	379 (aa)	XP_004074803	H2LS62

Gene Model

Click here to download ENSORLG00000007114's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000007114's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000007114	prdm12b	99	76.650	ENSORLG00000017558	-	100	77.411
ENSORLG00000007114	prdm12b	71	38.298	ENSORLG00000016247	prdm5	94	40.449

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000007114	prdm12b	92	81.268	ENSG00000130711	PRDM12	100	75.521	Homo_sapiens
ENSORLG00000007114	prdm12b	99	88.802	ENSAPOG00000016051	prdm12b	100	89.351	Acanthochromis_polyacanthus
ENSORLG00000007114	prdm12b	99	66.931	ENSAPOG00000018234	-	100	66.931	Acanthochromis_polyacanthus
ENSORLG00000007114	prdm12b	90	80.588	ENSAMEG00000016234	PRDM12	99	80.294	Ailuropoda_melanoleuca
ENSORLG00000007114	prdm12b	99	78.005	ENSACIG00000005193	-	100	78.261	Amphilophus_citrinellus
ENSORLG00000007114	prdm12b	99	88.889	ENSACIG00000019578	prdm12b	100	88.889	Amphilophus_citrinellus
ENSORLG00000007114	prdm12b	99	89.239	ENSAOCG00000015040	prdm12b	100	90.052	Amphiprion_ocellaris
ENSORLG00000007114	prdm12b	100	71.178	ENSAPEG00000022849	-	100	72.682	Amphiprion_percula
ENSORLG00000007114	prdm12b	99	87.927	ENSAPEG00000015092	prdm12b	100	88.220	Amphiprion_percula
ENSORLG00000007114	prdm12b	99	80.362	ENSATEG00000014595	-	100	80.362	Anabas_testudineus
ENSORLG00000007114	prdm12b	94	79.888	ENSANAG00000020616	PRDM12	100	79.330	Aotus_nancymaae
ENSORLG00000007114	prdm12b	99	74.378	ENSACLG00000007631	-	100	75.622	Astatotilapia_calliptera
ENSORLG00000007114	prdm12b	99	84.960	ENSACLG00000011876	prdm12b	100	84.960	Astatotilapia_calliptera
ENSORLG00000007114	prdm12b	99	79.790	ENSAMXG00000033665	prdm12b	100	80.052	Astyanax_mexicanus
ENSORLG00000007114	prdm12b	99	78.740	ENSAMXG00000008540	PRDM12	100	78.740	Astyanax_mexicanus
ENSORLG00000007114	prdm12b	92	81.556	ENSBTAG00000023797	PRDM12	99	77.807	Bos_taurus
ENSORLG00000007114	prdm12b	92	81.268	ENSCJAG00000020540	PRDM12	99	76.676	Callithrix_jacchus
ENSORLG00000007114	prdm12b	80	80.592	ENSCAFG00000023076	PRDM12	99	75.221	Canis_familiaris
ENSORLG00000007114	prdm12b	92	80.980	ENSCAFG00020024046	PRDM12	100	76.178	Canis_lupus_dingo
ENSORLG00000007114	prdm12b	92	80.980	ENSCHIG00000025005	PRDM12	100	76.253	Capra_hircus
ENSORLG00000007114	prdm12b	94	76.536	ENSCPOG00000005901	PRDM12	99	78.324	Cavia_porcellus
ENSORLG00000007114	prdm12b	92	81.268	ENSCCAG00000037485	PRDM12	100	75.521	Cebus_capucinus
ENSORLG00000007114	prdm12b	92	81.268	ENSCATG00000020327	PRDM12	100	75.521	Cercocebus_atys
ENSORLG00000007114	prdm12b	92	80.403	ENSCLAG00000005499	PRDM12	90	80.403	Chinchilla_lanigera
ENSORLG00000007114	prdm12b	92	81.268	ENSCSAG00000014756	PRDM12	100	75.654	Chlorocebus_sabaeus
ENSORLG00000007114	prdm12b	100	77.309	ENSCPBG00000022628	PRDM12	100	77.045	Chrysemys_picta_bellii
ENSORLG00000007114	prdm12b	92	81.556	ENSCGRG00001015005	Prdm12	100	75.979	Cricetulus_griseus_chok1gshd
ENSORLG00000007114	prdm12b	99	77.436	ENSCVAG00000000944	-	100	78.974	Cyprinodon_variegatus
ENSORLG00000007114	prdm12b	99	86.243	ENSCVAG00000017166	prdm12b	100	87.863	Cyprinodon_variegatus
ENSORLG00000007114	prdm12b	99	80.688	ENSDARG00000007430	prdm12b	100	80.688	Danio_rerio
ENSORLG00000007114	prdm12b	91	80.980	ENSDNOG00000042302	PRDM12	99	76.253	Dasypus_novemcinctus
ENSORLG00000007114	prdm12b	85	67.868	ENSEBUG00000016780	prdm12b	73	68.769	Eptatretus_burgeri
ENSORLG00000007114	prdm12b	94	79.609	ENSEASG00005008472	PRDM12	100	75.989	Equus_asinus_asinus
ENSORLG00000007114	prdm12b	94	79.609	ENSECAG00000005933	PRDM12	100	75.989	Equus_caballus
ENSORLG00000007114	prdm12b	99	83.333	ENSELUG00000013674	PRDM12	100	83.333	Esox_lucius
ENSORLG00000007114	prdm12b	99	81.316	ENSELUG00000009905	prdm12b	100	81.316	Esox_lucius
ENSORLG00000007114	prdm12b	92	80.980	ENSFCAG00000043086	PRDM12	100	76.042	Felis_catus
ENSORLG00000007114	prdm12b	100	77.573	ENSFALG00000001445	PRDM12	89	76.781	Ficedula_albicollis
ENSORLG00000007114	prdm12b	99	86.316	ENSFHEG00000003944	prdm12b	100	87.664	Fundulus_heteroclitus
ENSORLG00000007114	prdm12b	99	73.892	ENSFHEG00000007746	-	100	73.645	Fundulus_heteroclitus
ENSORLG00000007114	prdm12b	99	82.292	ENSGMOG00000011797	prdm12b	100	81.959	Gadus_morhua
ENSORLG00000007114	prdm12b	100	77.573	ENSGALG00000003895	PRDM12	100	77.309	Gallus_gallus
ENSORLG00000007114	prdm12b	100	85.233	ENSGAFG00000010827	prdm12b	100	85.455	Gambusia_affinis
ENSORLG00000007114	prdm12b	100	86.877	ENSGACG00000016713	prdm12b	100	86.352	Gasterosteus_aculeatus
ENSORLG00000007114	prdm12b	100	77.309	ENSGAGG00000014083	PRDM12	100	77.045	Gopherus_agassizii
ENSORLG00000007114	prdm12b	92	80.980	ENSGGOG00000010568	PRDM12	100	74.935	Gorilla_gorilla
ENSORLG00000007114	prdm12b	99	88.654	ENSHBUG00000022878	prdm12b	100	87.863	Haplochromis_burtoni
ENSORLG00000007114	prdm12b	99	74.378	ENSHBUG00000022537	-	93	75.622	Haplochromis_burtoni
ENSORLG00000007114	prdm12b	92	80.692	ENSHGLG00000013939	PRDM12	100	75.718	Heterocephalus_glaber_female
ENSORLG00000007114	prdm12b	90	88.439	ENSHCOG00000003663	prdm12b	100	81.818	Hippocampus_comes
ENSORLG00000007114	prdm12b	99	71.354	ENSHCOG00000021167	-	100	71.094	Hippocampus_comes
ENSORLG00000007114	prdm12b	99	82.322	ENSIPUG00000017053	prdm12b	100	82.058	Ictalurus_punctatus
ENSORLG00000007114	prdm12b	99	76.984	ENSIPUG00000019544	PRDM12	100	76.984	Ictalurus_punctatus
ENSORLG00000007114	prdm12b	97	77.273	ENSSTOG00000005986	PRDM12	93	77.273	Ictidomys_tridecemlineatus
ENSORLG00000007114	prdm12b	92	80.980	ENSJJAG00000005424	Prdm12	100	80.980	Jaculus_jaculus
ENSORLG00000007114	prdm12b	99	81.527	ENSKMAG00000016921	prdm12b	100	82.266	Kryptolebias_marmoratus
ENSORLG00000007114	prdm12b	94	78.333	ENSKMAG00000021205	-	94	77.747	Kryptolebias_marmoratus
ENSORLG00000007114	prdm12b	99	85.751	ENSLBEG00000017769	prdm12b	100	86.010	Labrus_bergylta
ENSORLG00000007114	prdm12b	99	78.756	ENSLBEG00000007776	-	100	78.811	Labrus_bergylta
ENSORLG00000007114	prdm12b	99	77.513	ENSLACG00000017560	PRDM12	99	76.984	Latimeria_chalumnae
ENSORLG00000007114	prdm12b	99	81.627	ENSLOCG00000005429	prdm12b	100	82.152	Lepisosteus_oculatus
ENSORLG00000007114	prdm12b	91	81.977	ENSLAFG00000006979	PRDM12	95	77.358	Loxodonta_africana
ENSORLG00000007114	prdm12b	92	80.980	ENSMFAG00000040322	PRDM12	100	75.000	Macaca_fascicularis
ENSORLG00000007114	prdm12b	92	81.268	ENSMNEG00000037234	PRDM12	100	75.521	Macaca_nemestrina
ENSORLG00000007114	prdm12b	99	73.333	ENSMAMG00000018988	-	100	73.827	Mastacembelus_armatus
ENSORLG00000007114	prdm12b	99	88.684	ENSMAMG00000013212	prdm12b	100	88.684	Mastacembelus_armatus
ENSORLG00000007114	prdm12b	99	74.010	ENSMZEG00005000415	PRDM12	100	75.248	Maylandia_zebra
ENSORLG00000007114	prdm12b	97	78.415	ENSMGAG00000005438	PRDM12	98	78.142	Meleagris_gallopavo
ENSORLG00000007114	prdm12b	94	80.168	ENSMAUG00000013040	Prdm12	100	76.240	Mesocricetus_auratus
ENSORLG00000007114	prdm12b	93	80.114	ENSMICG00000015480	PRDM12	99	77.067	Microcebus_murinus
ENSORLG00000007114	prdm12b	99	78.191	ENSMOCG00000021026	Prdm12	93	80.168	Microtus_ochrogaster
ENSORLG00000007114	prdm12b	100	77.045	ENSMODG00000012108	PRDM12	100	77.045	Monodelphis_domestica
ENSORLG00000007114	prdm12b	85	84.000	ENSMALG00000021901	prdm12b	97	83.077	Monopterus_albus
ENSORLG00000007114	prdm12b	92	81.556	MGP_CAROLIEiJ_G0023414	Prdm12	100	76.240	Mus_caroli
ENSORLG00000007114	prdm12b	92	81.556	ENSMUSG00000079466	Prdm12	100	76.240	Mus_musculus
ENSORLG00000007114	prdm12b	92	81.556	MGP_PahariEiJ_G0024871	Prdm12	100	76.240	Mus_pahari
ENSORLG00000007114	prdm12b	92	81.556	MGP_SPRETEiJ_G0024331	Prdm12	100	76.240	Mus_spretus
ENSORLG00000007114	prdm12b	91	81.977	ENSNGAG00000018480	Prdm12	99	77.778	Nannospalax_galili
ENSORLG00000007114	prdm12b	99	71.059	ENSNBRG00000024312	-	100	71.318	Neolamprologus_brichardi
ENSORLG00000007114	prdm12b	99	88.127	ENSNBRG00000006727	prdm12b	100	88.391	Neolamprologus_brichardi
ENSORLG00000007114	prdm12b	100	69.129	ENSMEUG00000003828	PRDM12	100	69.129	Notamacropus_eugenii
ENSORLG00000007114	prdm12b	92	80.980	ENSOPRG00000008680	PRDM12	100	80.980	Ochotona_princeps
ENSORLG00000007114	prdm12b	94	78.992	ENSODEG00000016282	PRDM12	64	78.992	Octodon_degus
ENSORLG00000007114	prdm12b	64	74.274	ENSOANG00000001043	PRDM12	100	73.859	Ornithorhynchus_anatinus
ENSORLG00000007114	prdm12b	85	78.419	ENSOCUG00000008241	PRDM12	100	78.419	Oryctolagus_cuniculus
ENSORLG00000007114	prdm12b	100	98.950	ENSORLG00020019565	prdm12b	100	98.950	Oryzias_latipes_hni
ENSORLG00000007114	prdm12b	99	76.904	ENSORLG00020013167	-	100	77.665	Oryzias_latipes_hni
ENSORLG00000007114	prdm12b	99	76.650	ENSORLG00015003435	-	100	77.411	Oryzias_latipes_hsok
ENSORLG00000007114	prdm12b	100	98.947	ENSORLG00015007621	prdm12b	100	98.947	Oryzias_latipes_hsok
ENSORLG00000007114	prdm12b	100	96.354	ENSOMEG00000004134	prdm12b	100	96.354	Oryzias_melastigma
ENSORLG00000007114	prdm12b	99	78.295	ENSOMEG00000007762	-	100	77.778	Oryzias_melastigma
ENSORLG00000007114	prdm12b	92	80.980	ENSOGAG00000007557	PRDM12	99	80.980	Otolemur_garnettii
ENSORLG00000007114	prdm12b	80	79.934	ENSPPAG00000031506	-	99	78.387	Pan_paniscus
ENSORLG00000007114	prdm12b	100	70.526	ENSPPRG00000023024	PRDM12	92	70.526	Panthera_pardus
ENSORLG00000007114	prdm12b	92	81.268	ENSPTRG00000043324	-	100	75.196	Pan_troglodytes
ENSORLG00000007114	prdm12b	92	81.268	ENSPTRG00000021475	PRDM12	100	75.196	Pan_troglodytes
ENSORLG00000007114	prdm12b	92	81.268	ENSPANG00000025967	PRDM12	100	75.521	Papio_anubis
ENSORLG00000007114	prdm12b	99	81.746	ENSPKIG00000007228	prdm12b	100	81.481	Paramormyrops_kingsleyae
ENSORLG00000007114	prdm12b	90	79.532	ENSPKIG00000004305	PRDM12	94	79.532	Paramormyrops_kingsleyae
ENSORLG00000007114	prdm12b	100	77.573	ENSPSIG00000006739	PRDM12	100	77.309	Pelodiscus_sinensis
ENSORLG00000007114	prdm12b	100	85.263	ENSPMGG00000008867	prdm12b	100	86.089	Periophthalmus_magnuspinnatus
ENSORLG00000007114	prdm12b	91	79.656	ENSPMGG00000002356	-	100	73.000	Periophthalmus_magnuspinnatus
ENSORLG00000007114	prdm12b	92	81.556	ENSPEMG00000009969	Prdm12	94	79.224	Peromyscus_maniculatus_bairdii
ENSORLG00000007114	prdm12b	100	77.045	ENSPCIG00000024119	PRDM12	100	77.045	Phascolarctos_cinereus
ENSORLG00000007114	prdm12b	99	87.632	ENSPFOG00000019841	prdm12b	100	87.368	Poecilia_formosa
ENSORLG00000007114	prdm12b	100	84.794	ENSPLAG00000016626	prdm12b	100	85.604	Poecilia_latipinna
ENSORLG00000007114	prdm12b	96	85.294	ENSPMEG00000016698	prdm12b	99	85.829	Poecilia_mexicana
ENSORLG00000007114	prdm12b	95	73.984	ENSPREG00000003211	-	94	73.713	Poecilia_reticulata
ENSORLG00000007114	prdm12b	100	84.062	ENSPREG00000015073	prdm12b	100	84.872	Poecilia_reticulata
ENSORLG00000007114	prdm12b	96	79.006	ENSPPYG00000019694	PRDM12	98	78.453	Pongo_abelii
ENSORLG00000007114	prdm12b	92	80.980	ENSPCOG00000022255	PRDM12	100	75.718	Propithecus_coquereli
ENSORLG00000007114	prdm12b	92	80.692	ENSPVAG00000001511	PRDM12	100	75.521	Pteropus_vampyrus
ENSORLG00000007114	prdm12b	99	74.010	ENSPNYG00000013589	-	100	75.743	Pundamilia_nyererei
ENSORLG00000007114	prdm12b	99	88.127	ENSPNYG00000009607	prdm12b	100	88.918	Pundamilia_nyererei
ENSORLG00000007114	prdm12b	99	81.266	ENSPNAG00000024532	prdm12b	100	81.579	Pygocentrus_nattereri
ENSORLG00000007114	prdm12b	99	77.778	ENSPNAG00000013396	PRDM12	100	77.519	Pygocentrus_nattereri
ENSORLG00000007114	prdm12b	92	81.556	ENSRNOG00000009218	Prdm12	100	76.240	Rattus_norvegicus
ENSORLG00000007114	prdm12b	88	81.437	ENSRBIG00000042712	PRDM12	98	75.936	Rhinopithecus_bieti
ENSORLG00000007114	prdm12b	89	82.249	ENSRROG00000043554	PRDM12	100	81.657	Rhinopithecus_roxellana
ENSORLG00000007114	prdm12b	100	76.842	ENSSHAG00000015972	PRDM12	100	76.842	Sarcophilus_harrisii
ENSORLG00000007114	prdm12b	99	87.692	ENSSMAG00000003754	prdm12b	100	87.692	Scophthalmus_maximus
ENSORLG00000007114	prdm12b	99	80.260	ENSSDUG00000019071	-	100	80.519	Seriola_dumerili
ENSORLG00000007114	prdm12b	99	88.571	ENSSDUG00000023498	prdm12b	100	88.831	Seriola_dumerili
ENSORLG00000007114	prdm12b	99	89.267	ENSSLDG00000009557	prdm12b	100	89.267	Seriola_lalandi_dorsalis
ENSORLG00000007114	prdm12b	99	76.903	ENSSLDG00000013562	-	100	76.903	Seriola_lalandi_dorsalis
ENSORLG00000007114	prdm12b	100	76.781	ENSSPUG00000013424	PRDM12	100	76.517	Sphenodon_punctatus
ENSORLG00000007114	prdm12b	99	88.189	ENSSPAG00000018824	prdm12b	100	88.743	Stegastes_partitus
ENSORLG00000007114	prdm12b	99	70.437	ENSSPAG00000022420	-	100	70.437	Stegastes_partitus
ENSORLG00000007114	prdm12b	92	80.980	ENSSSCG00000005703	PRDM12	100	76.178	Sus_scrofa
ENSORLG00000007114	prdm12b	99	77.632	ENSTRUG00000013239	-	100	77.368	Takifugu_rubripes
ENSORLG00000007114	prdm12b	99	84.514	ENSTRUG00000018659	prdm12b	100	84.514	Takifugu_rubripes
ENSORLG00000007114	prdm12b	99	74.607	ENSTNIG00000005859	-	99	74.084	Tetraodon_nigroviridis
ENSORLG00000007114	prdm12b	99	85.827	ENSTNIG00000009020	prdm12b	99	85.827	Tetraodon_nigroviridis
ENSORLG00000007114	prdm12b	92	80.980	ENSUAMG00000009653	PRDM12	94	79.552	Ursus_americanus
ENSORLG00000007114	prdm12b	92	80.980	ENSVVUG00000027662	PRDM12	78	81.686	Vulpes_vulpes
ENSORLG00000007114	prdm12b	100	85.379	ENSXCOG00000002836	prdm12b	100	86.198	Xiphophorus_couchianus
ENSORLG00000007114	prdm12b	99	75.616	ENSXMAG00000028012	-	100	75.862	Xiphophorus_maculatus
ENSORLG00000007114	prdm12b	99	85.864	ENSXMAG00000005537	prdm12b	100	86.684	Xiphophorus_maculatus