EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000007308 (Gene tree)
Gene ID: 101158847
Gene Symbol: snrpc
Alias: -
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 5628 bases
Position: chr5:14652608-14658235
Accession: 101158847
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000028386	zf-U1	PF06220.12	1.2e-22	1	1
ENSORLP00000009166	zf-U1	PF06220.12	1.1e-20	1	1
ENSORLP00000009164	zf-U1	PF06220.12	2.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000046351	-	1786	XM_011475010	ENSORLP00000028386	146 (aa)	XP_011473312	UPI0002A4B7D9
ENSORLT00000009167	-	468	-	ENSORLP00000009166	155 (aa)	-	H2LSV0
ENSORLT00000009165	-	1750	-	ENSORLP00000009164	228 (aa)	-	H2LSU8

Gene Model

Click here to download ENSORLG00000007308's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000007308's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000007308	snrpc	97	97.183	ENSAPOG00000013907	snrpc	96	97.183	Acanthochromis_polyacanthus
ENSORLG00000007308	snrpc	95	91.429	ENSACIG00000010867	snrpc	96	61.594	Amphilophus_citrinellus
ENSORLG00000007308	snrpc	97	97.183	ENSAOCG00000021151	snrpc	96	97.183	Amphiprion_ocellaris
ENSORLG00000007308	snrpc	97	97.183	ENSAPEG00000023221	snrpc	96	97.183	Amphiprion_percula
ENSORLG00000007308	snrpc	97	97.183	ENSATEG00000025133	snrpc	96	97.183	Anabas_testudineus
ENSORLG00000007308	snrpc	97	68.056	ENSANAG00000019726	-	58	78.723	Aotus_nancymaae
ENSORLG00000007308	snrpc	58	80.000	ENSANAG00000019157	-	66	78.095	Aotus_nancymaae
ENSORLG00000007308	snrpc	97	96.503	ENSACLG00000000843	snrpc	96	96.503	Astatotilapia_calliptera
ENSORLG00000007308	snrpc	97	60.000	ENSCCAG00000028293	-	82	52.336	Cebus_capucinus
ENSORLG00000007308	snrpc	51	69.333	ENSCGRG00001021483	-	83	40.496	Cricetulus_griseus_chok1gshd
ENSORLG00000007308	snrpc	97	97.183	ENSCVAG00000014297	snrpc	96	97.183	Cyprinodon_variegatus
ENSORLG00000007308	snrpc	51	92.000	ENSDORG00000029823	-	62	61.628	Dipodomys_ordii
ENSORLG00000007308	snrpc	97	50.299	ENSEEUG00000014633	SNRPC	95	50.299	Erinaceus_europaeus
ENSORLG00000007308	snrpc	97	78.846	ENSELUG00000020489	snrpc	54	66.279	Esox_lucius
ENSORLG00000007308	snrpc	75	100.000	ENSFHEG00000016667	snrpc	97	100.000	Fundulus_heteroclitus
ENSORLG00000007308	snrpc	61	95.714	ENSGMOG00000000090	snrpc	96	95.714	Gadus_morhua
ENSORLG00000007308	snrpc	97	97.183	ENSGAFG00000016115	snrpc	96	97.183	Gambusia_affinis
ENSORLG00000007308	snrpc	96	96.429	ENSGACG00000004899	snrpc	94	96.429	Gasterosteus_aculeatus
ENSORLG00000007308	snrpc	97	96.503	ENSHBUG00000011637	snrpc	96	96.503	Haplochromis_burtoni
ENSORLG00000007308	snrpc	97	75.817	ENSHGLG00100017764	-	58	58.511	Heterocephalus_glaber_male
ENSORLG00000007308	snrpc	97	82.468	ENSIPUG00000024851	snrpc	65	54.808	Ictalurus_punctatus
ENSORLG00000007308	snrpc	97	97.887	ENSKMAG00000016356	snrpc	96	97.887	Kryptolebias_marmoratus
ENSORLG00000007308	snrpc	97	96.503	ENSLBEG00000023881	snrpc	96	96.503	Labrus_bergylta
ENSORLG00000007308	snrpc	93	60.432	ENSMLEG00000039724	-	65	54.098	Mandrillus_leucophaeus
ENSORLG00000007308	snrpc	97	97.183	ENSMAMG00000003857	snrpc	96	97.183	Mastacembelus_armatus
ENSORLG00000007308	snrpc	97	96.503	ENSMZEG00005002199	snrpc	96	96.503	Maylandia_zebra
ENSORLG00000007308	snrpc	95	96.403	ENSMMOG00000013149	snrpc	96	96.403	Mola_mola
ENSORLG00000007308	snrpc	97	95.070	ENSMALG00000001197	snrpc	57	98.810	Monopterus_albus
ENSORLG00000007308	snrpc	97	96.503	ENSONIG00000014757	snrpc	96	96.503	Oreochromis_niloticus
ENSORLG00000007308	snrpc	100	99.320	ENSORLG00020012607	SNRPC	100	99.338	Oryzias_latipes_hni
ENSORLG00000007308	snrpc	97	99.301	ENSOMEG00000012014	snrpc	82	99.301	Oryzias_melastigma
ENSORLG00000007308	snrpc	97	65.789	ENSOGAG00000028405	-	67	66.019	Otolemur_garnettii
ENSORLG00000007308	snrpc	95	46.897	ENSPPRG00000016017	-	69	37.607	Panthera_pardus
ENSORLG00000007308	snrpc	97	77.778	ENSPKIG00000001671	SNRPC	52	67.470	Paramormyrops_kingsleyae
ENSORLG00000007308	snrpc	95	94.245	ENSPMGG00000022162	snrpc	96	94.245	Periophthalmus_magnuspinnatus
ENSORLG00000007308	snrpc	97	97.183	ENSPFOG00000015174	snrpc	96	97.183	Poecilia_formosa
ENSORLG00000007308	snrpc	97	97.183	ENSPLAG00000012311	snrpc	96	97.183	Poecilia_latipinna
ENSORLG00000007308	snrpc	97	97.183	ENSPMEG00000010274	snrpc	96	97.183	Poecilia_mexicana
ENSORLG00000007308	snrpc	96	82.143	ENSPREG00000013017	snrpc	58	74.766	Poecilia_reticulata
ENSORLG00000007308	snrpc	85	73.387	ENSPNYG00000004900	snrpc	96	59.420	Pundamilia_nyererei
ENSORLG00000007308	snrpc	97	82.353	ENSPNAG00000012799	snrpc	64	74.227	Pygocentrus_nattereri
ENSORLG00000007308	snrpc	95	73.571	ENSSBOG00000032882	-	54	60.241	Saimiri_boliviensis_boliviensis
ENSORLG00000007308	snrpc	56	85.870	ENSSFOG00015022422	snrpc	66	54.808	Scleropages_formosus
ENSORLG00000007308	snrpc	97	97.183	ENSSMAG00000008029	snrpc	96	97.183	Scophthalmus_maximus
ENSORLG00000007308	snrpc	97	97.183	ENSSDUG00000018895	snrpc	78	97.183	Seriola_dumerili
ENSORLG00000007308	snrpc	97	97.183	ENSSLDG00000005034	snrpc	96	97.183	Seriola_lalandi_dorsalis
ENSORLG00000007308	snrpc	97	97.183	ENSSPAG00000000914	snrpc	96	97.183	Stegastes_partitus
ENSORLG00000007308	snrpc	97	80.986	ENSTRUG00000021651	snrpc	57	98.810	Takifugu_rubripes
ENSORLG00000007308	snrpc	94	75.676	ENSVVUG00000010467	-	54	59.596	Vulpes_vulpes
ENSORLG00000007308	snrpc	95	92.086	ENSXCOG00000015871	-	96	59.028	Xiphophorus_couchianus
ENSORLG00000007308	snrpc	97	97.183	ENSXMAG00000017935	snrpc	96	97.183	Xiphophorus_maculatus