EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000007314 (Gene tree)
Gene ID: 101155720
Gene Symbol: smg7
Alias: -
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 18497 bases
Position: chr17:12532361-12550857
Accession: 101155720
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000036150	EST1	PF10374.9	6.6e-25	1	1
ENSORLP00000009173	EST1	PF10374.9	6.9e-25	1	1
ENSORLP00000039487	EST1	PF10374.9	7.6e-25	1	1
ENSORLP00000030135	EST1	PF10374.9	4.6e-21	1	1
ENSORLP00000036150	EST1_DNA_bind	PF10373.9	4.2e-47	1	1
ENSORLP00000009173	EST1_DNA_bind	PF10373.9	4.3e-47	1	1
ENSORLP00000039487	EST1_DNA_bind	PF10373.9	4.6e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000009174	-	8098	XM_023965207	ENSORLP00000009173	1091 (aa)	XP_023820975	H2LSV7
ENSORLT00000039518	-	8038	-	ENSORLP00000036150	1071 (aa)	-	-
ENSORLT00000031698	-	8248	XM_023965205	ENSORLP00000039487	1141 (aa)	XP_023820973	UPI000CE22CEF
ENSORLT00000046752	-	654	-	ENSORLP00000030135	217 (aa)	-	-

Gene Model

Click here to download ENSORLG00000007314's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000007314's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000007314	smg7	77	85.965	ENSG00000116698	SMG7	93	85.965	Homo_sapiens
ENSORLG00000007314	smg7	95	86.756	ENSAPOG00000009611	smg7	99	74.000	Acanthochromis_polyacanthus
ENSORLG00000007314	smg7	99	64.007	ENSAMEG00000002357	SMG7	100	63.099	Ailuropoda_melanoleuca
ENSORLG00000007314	smg7	97	78.760	ENSACIG00000015152	smg7	100	78.760	Amphilophus_citrinellus
ENSORLG00000007314	smg7	100	80.567	ENSAOCG00000013538	smg7	100	80.567	Amphiprion_ocellaris
ENSORLG00000007314	smg7	100	80.417	ENSAPEG00000007851	smg7	100	80.417	Amphiprion_percula
ENSORLG00000007314	smg7	100	80.575	ENSATEG00000006931	smg7	100	80.139	Anabas_testudineus
ENSORLG00000007314	smg7	70	92.763	ENSAPLG00000015811	SMG7	99	62.989	Anas_platyrhynchos
ENSORLG00000007314	smg7	98	68.056	ENSACAG00000014989	SMG7	99	62.932	Anolis_carolinensis
ENSORLG00000007314	smg7	82	82.778	ENSANAG00000028114	SMG7	98	82.778	Aotus_nancymaae
ENSORLG00000007314	smg7	100	80.537	ENSACLG00000022079	smg7	100	79.950	Astatotilapia_calliptera
ENSORLG00000007314	smg7	100	74.348	ENSAMXG00000020809	smg7	100	74.916	Astyanax_mexicanus
ENSORLG00000007314	smg7	70	92.763	ENSBTAG00000008003	SMG7	99	63.330	Bos_taurus
ENSORLG00000007314	smg7	81	84.444	ENSCJAG00000005135	SMG7	98	84.444	Callithrix_jacchus
ENSORLG00000007314	smg7	70	92.763	ENSCAFG00000013276	SMG7	97	62.115	Canis_familiaris
ENSORLG00000007314	smg7	70	92.763	ENSCAFG00020015475	SMG7	98	83.333	Canis_lupus_dingo
ENSORLG00000007314	smg7	74	88.820	ENSCHIG00000018192	SMG7	99	62.178	Capra_hircus
ENSORLG00000007314	smg7	84	81.622	ENSTSYG00000002667	SMG7	95	81.622	Carlito_syrichta
ENSORLG00000007314	smg7	70	92.763	ENSCPOG00000008906	SMG7	99	61.841	Cavia_porcellus
ENSORLG00000007314	smg7	81	83.240	ENSCCAG00000028596	SMG7	97	83.240	Cebus_capucinus
ENSORLG00000007314	smg7	77	85.965	ENSCATG00000011063	SMG7	97	83.240	Cercocebus_atys
ENSORLG00000007314	smg7	70	92.763	ENSCLAG00000010751	SMG7	99	63.762	Chinchilla_lanigera
ENSORLG00000007314	smg7	70	92.763	ENSCSAG00000012654	SMG7	97	62.313	Chlorocebus_sabaeus
ENSORLG00000007314	smg7	91	54.874	ENSCHOG00000010522	SMG7	82	60.345	Choloepus_hoffmanni
ENSORLG00000007314	smg7	99	65.091	ENSCPBG00000015724	SMG7	99	63.682	Chrysemys_picta_bellii
ENSORLG00000007314	smg7	71	51.875	ENSCING00000006953	-	97	53.185	Ciona_intestinalis
ENSORLG00000007314	smg7	77	85.965	ENSCANG00000015680	SMG7	98	83.333	Colobus_angolensis_palliatus
ENSORLG00000007314	smg7	70	92.105	ENSCGRG00001013705	Smg7	99	63.258	Cricetulus_griseus_chok1gshd
ENSORLG00000007314	smg7	70	92.105	ENSCGRG00000018401	Smg7	100	63.185	Cricetulus_griseus_crigri
ENSORLG00000007314	smg7	74	91.925	ENSCSEG00000007392	-	90	91.925	Cynoglossus_semilaevis
ENSORLG00000007314	smg7	99	78.614	ENSCVAG00000011842	smg7	100	78.276	Cyprinodon_variegatus
ENSORLG00000007314	smg7	100	73.305	ENSDARG00000060767	smg7	100	72.765	Danio_rerio
ENSORLG00000007314	smg7	70	92.763	ENSDORG00000007331	Smg7	99	62.385	Dipodomys_ordii
ENSORLG00000007314	smg7	70	92.763	ENSETEG00000002654	SMG7	99	61.154	Echinops_telfairi
ENSORLG00000007314	smg7	70	92.763	ENSEASG00005006524	SMG7	99	62.052	Equus_asinus_asinus
ENSORLG00000007314	smg7	70	92.763	ENSECAG00000004313	SMG7	99	62.052	Equus_caballus
ENSORLG00000007314	smg7	65	92.908	ENSEEUG00000002024	SMG7	94	60.447	Erinaceus_europaeus
ENSORLG00000007314	smg7	100	74.791	ENSELUG00000010293	smg7	100	74.791	Esox_lucius
ENSORLG00000007314	smg7	70	92.763	ENSFCAG00000010900	SMG7	99	63.022	Felis_catus
ENSORLG00000007314	smg7	99	62.596	ENSFALG00000003047	SMG7	100	63.203	Ficedula_albicollis
ENSORLG00000007314	smg7	74	89.375	ENSFDAG00000012121	SMG7	99	61.857	Fukomys_damarensis
ENSORLG00000007314	smg7	100	79.720	ENSFHEG00000011073	smg7	100	79.283	Fundulus_heteroclitus
ENSORLG00000007314	smg7	86	80.603	ENSGMOG00000004916	smg7	91	80.603	Gadus_morhua
ENSORLG00000007314	smg7	70	92.763	ENSGALG00000004667	SMG7	99	62.877	Gallus_gallus
ENSORLG00000007314	smg7	100	79.772	ENSGAFG00000019000	smg7	100	78.984	Gambusia_affinis
ENSORLG00000007314	smg7	97	77.677	ENSGACG00000001634	smg7	99	77.021	Gasterosteus_aculeatus
ENSORLG00000007314	smg7	72	92.357	ENSGAGG00000024208	-	84	92.357	Gopherus_agassizii
ENSORLG00000007314	smg7	82	81.967	ENSGGOG00000002342	SMG7	94	81.967	Gorilla_gorilla
ENSORLG00000007314	smg7	100	80.705	ENSHBUG00000003726	smg7	100	80.117	Haplochromis_burtoni
ENSORLG00000007314	smg7	70	93.421	ENSHGLG00000009353	SMG7	99	63.762	Heterocephalus_glaber_female
ENSORLG00000007314	smg7	70	93.421	ENSHGLG00100009637	-	99	63.676	Heterocephalus_glaber_male
ENSORLG00000007314	smg7	70	88.158	ENSHGLG00100004878	-	99	56.784	Heterocephalus_glaber_male
ENSORLG00000007314	smg7	71	91.558	ENSHCOG00000012804	-	82	93.506	Hippocampus_comes
ENSORLG00000007314	smg7	100	74.327	ENSIPUG00000016997	smg7	100	73.906	Ictalurus_punctatus
ENSORLG00000007314	smg7	70	92.763	ENSSTOG00000000401	SMG7	99	62.385	Ictidomys_tridecemlineatus
ENSORLG00000007314	smg7	70	92.763	ENSJJAG00000012351	Smg7	99	61.730	Jaculus_jaculus
ENSORLG00000007314	smg7	77	73.099	ENSJJAG00000000309	-	96	73.099	Jaculus_jaculus
ENSORLG00000007314	smg7	97	75.586	ENSKMAG00000004900	smg7	100	75.856	Kryptolebias_marmoratus
ENSORLG00000007314	smg7	99	79.277	ENSLBEG00000002983	smg7	99	79.541	Labrus_bergylta
ENSORLG00000007314	smg7	55	73.524	ENSLBEG00000005220	-	75	73.693	Labrus_bergylta
ENSORLG00000007314	smg7	100	65.441	ENSLACG00000000972	SMG7	100	65.546	Latimeria_chalumnae
ENSORLG00000007314	smg7	99	68.517	ENSLOCG00000002010	smg7	99	67.440	Lepisosteus_oculatus
ENSORLG00000007314	smg7	72	91.026	ENSLAFG00000008186	SMG7	99	62.322	Loxodonta_africana
ENSORLG00000007314	smg7	77	85.965	ENSMFAG00000031653	SMG7	97	83.240	Macaca_fascicularis
ENSORLG00000007314	smg7	70	92.763	ENSMMUG00000018458	SMG7	99	63.018	Macaca_mulatta
ENSORLG00000007314	smg7	77	85.965	ENSMNEG00000034798	SMG7	97	83.240	Macaca_nemestrina
ENSORLG00000007314	smg7	70	92.763	ENSMLEG00000037170	SMG7	100	62.799	Mandrillus_leucophaeus
ENSORLG00000007314	smg7	70	97.351	ENSMAMG00000018733	smg7	86	78.125	Mastacembelus_armatus
ENSORLG00000007314	smg7	100	80.789	ENSMZEG00005015247	smg7	100	79.866	Maylandia_zebra
ENSORLG00000007314	smg7	70	92.763	ENSMGAG00000001561	SMG7	99	62.892	Meleagris_gallopavo
ENSORLG00000007314	smg7	70	92.105	ENSMAUG00000019484	Smg7	99	62.912	Mesocricetus_auratus
ENSORLG00000007314	smg7	80	84.091	ENSMICG00000007145	SMG7	92	84.091	Microcebus_murinus
ENSORLG00000007314	smg7	70	92.105	ENSMOCG00000020748	Smg7	99	62.630	Microtus_ochrogaster
ENSORLG00000007314	smg7	99	75.950	ENSMMOG00000001524	smg7	99	75.420	Mola_mola
ENSORLG00000007314	smg7	70	92.763	ENSMODG00000007139	SMG7	99	64.252	Monodelphis_domestica
ENSORLG00000007314	smg7	100	80.756	ENSMALG00000000061	smg7	93	83.251	Monopterus_albus
ENSORLG00000007314	smg7	70	92.105	MGP_CAROLIEiJ_G0014704	Smg7	99	63.040	Mus_caroli
ENSORLG00000007314	smg7	99	62.586	ENSMUSG00000042772	Smg7	99	62.759	Mus_musculus
ENSORLG00000007314	smg7	70	92.105	MGP_PahariEiJ_G0027940	Smg7	99	63.149	Mus_pahari
ENSORLG00000007314	smg7	70	92.105	MGP_SPRETEiJ_G0015511	Smg7	99	62.845	Mus_spretus
ENSORLG00000007314	smg7	98	62.542	ENSMPUG00000011732	SMG7	97	62.037	Mustela_putorius_furo
ENSORLG00000007314	smg7	74	90.000	ENSMLUG00000015417	SMG7	99	61.487	Myotis_lucifugus
ENSORLG00000007314	smg7	100	63.543	ENSNGAG00000009836	Smg7	100	63.199	Nannospalax_galili
ENSORLG00000007314	smg7	98	73.979	ENSNBRG00000024343	smg7	99	73.286	Neolamprologus_brichardi
ENSORLG00000007314	smg7	70	92.763	ENSNLEG00000018018	SMG7	100	63.055	Nomascus_leucogenys
ENSORLG00000007314	smg7	70	65.341	ENSMEUG00000004681	SMG7	73	65.341	Notamacropus_eugenii
ENSORLG00000007314	smg7	70	92.715	ENSOPRG00000013942	SMG7	96	57.890	Ochotona_princeps
ENSORLG00000007314	smg7	99	63.848	ENSODEG00000010390	SMG7	99	64.107	Octodon_degus
ENSORLG00000007314	smg7	100	80.736	ENSONIG00000000277	smg7	100	80.123	Oreochromis_niloticus
ENSORLG00000007314	smg7	99	62.364	ENSOANG00000000994	SMG7	100	61.526	Ornithorhynchus_anatinus
ENSORLG00000007314	smg7	70	92.105	ENSOCUG00000005887	SMG7	93	60.667	Oryctolagus_cuniculus
ENSORLG00000007314	smg7	100	99.126	ENSORLG00020015779	smg7	100	99.126	Oryzias_latipes_hni
ENSORLG00000007314	smg7	100	98.720	ENSORLG00015012289	smg7	100	98.720	Oryzias_latipes_hsok
ENSORLG00000007314	smg7	100	95.895	ENSOMEG00000002328	smg7	100	95.895	Oryzias_melastigma
ENSORLG00000007314	smg7	70	92.763	ENSOGAG00000003107	SMG7	93	62.489	Otolemur_garnettii
ENSORLG00000007314	smg7	70	92.763	ENSOARG00000001352	SMG7	100	62.236	Ovis_aries
ENSORLG00000007314	smg7	80	84.181	ENSPPAG00000031619	SMG7	96	84.181	Pan_paniscus
ENSORLG00000007314	smg7	99	64.508	ENSPPRG00000011222	SMG7	99	64.162	Panthera_pardus
ENSORLG00000007314	smg7	78	84.706	ENSPTIG00000007242	SMG7	100	63.194	Panthera_tigris_altaica
ENSORLG00000007314	smg7	81	83.240	ENSPTRG00000001764	SMG7	97	83.240	Pan_troglodytes
ENSORLG00000007314	smg7	70	92.763	ENSPANG00000004520	SMG7	99	63.676	Papio_anubis
ENSORLG00000007314	smg7	100	69.856	ENSPKIG00000007242	smg7	100	69.433	Paramormyrops_kingsleyae
ENSORLG00000007314	smg7	74	88.750	ENSPSIG00000012201	SMG7	100	62.120	Pelodiscus_sinensis
ENSORLG00000007314	smg7	70	50.744	ENSPMGG00000021833	smg7	98	50.811	Periophthalmus_magnuspinnatus
ENSORLG00000007314	smg7	70	90.789	ENSPMGG00000002179	-	94	82.941	Periophthalmus_magnuspinnatus
ENSORLG00000007314	smg7	70	92.105	ENSPEMG00000011315	Smg7	99	62.511	Peromyscus_maniculatus_bairdii
ENSORLG00000007314	smg7	70	93.377	ENSPCIG00000003786	SMG7	89	91.250	Phascolarctos_cinereus
ENSORLG00000007314	smg7	100	80.034	ENSPFOG00000019219	smg7	100	79.530	Poecilia_formosa
ENSORLG00000007314	smg7	100	79.842	ENSPLAG00000001446	smg7	100	79.316	Poecilia_latipinna
ENSORLG00000007314	smg7	97	79.438	ENSPMEG00000005218	smg7	99	78.895	Poecilia_mexicana
ENSORLG00000007314	smg7	70	98.013	ENSPREG00000019039	smg7	92	79.086	Poecilia_reticulata
ENSORLG00000007314	smg7	70	92.763	ENSPPYG00000000427	SMG7	99	63.762	Pongo_abelii
ENSORLG00000007314	smg7	84	70.460	ENSPCAG00000008360	SMG7	86	70.460	Procavia_capensis
ENSORLG00000007314	smg7	81	83.051	ENSPCOG00000011996	SMG7	87	83.051	Propithecus_coquereli
ENSORLG00000007314	smg7	70	92.105	ENSPVAG00000000851	SMG7	89	57.832	Pteropus_vampyrus
ENSORLG00000007314	smg7	100	80.688	ENSPNYG00000007643	smg7	100	80.101	Pundamilia_nyererei
ENSORLG00000007314	smg7	100	73.601	ENSPNAG00000011374	smg7	100	73.561	Pygocentrus_nattereri
ENSORLG00000007314	smg7	70	92.105	ENSRNOG00000027962	Smg7	99	64.366	Rattus_norvegicus
ENSORLG00000007314	smg7	70	92.763	ENSRBIG00000036316	SMG7	100	62.713	Rhinopithecus_bieti
ENSORLG00000007314	smg7	70	92.763	ENSRROG00000035719	SMG7	100	62.713	Rhinopithecus_roxellana
ENSORLG00000007314	smg7	77	85.965	ENSSBOG00000023454	SMG7	93	85.965	Saimiri_boliviensis_boliviensis
ENSORLG00000007314	smg7	75	88.272	ENSSHAG00000013147	SMG7	99	63.778	Sarcophilus_harrisii
ENSORLG00000007314	smg7	100	70.603	ENSSFOG00015017252	smg7	100	70.017	Scleropages_formosus
ENSORLG00000007314	smg7	100	79.661	ENSSMAG00000006067	smg7	100	80.102	Scophthalmus_maximus
ENSORLG00000007314	smg7	100	80.676	ENSSDUG00000017543	smg7	100	80.329	Seriola_dumerili
ENSORLG00000007314	smg7	70	96.711	ENSSLDG00000003750	-	96	96.250	Seriola_lalandi_dorsalis
ENSORLG00000007314	smg7	71	91.558	ENSSPUG00000002064	SMG7	99	61.724	Sphenodon_punctatus
ENSORLG00000007314	smg7	98	80.304	ENSSPAG00000008733	smg7	98	80.125	Stegastes_partitus
ENSORLG00000007314	smg7	70	92.763	ENSSSCG00000015558	SMG7	99	61.885	Sus_scrofa
ENSORLG00000007314	smg7	70	92.763	ENSTGUG00000003928	SMG7	100	63.377	Taeniopygia_guttata
ENSORLG00000007314	smg7	81	84.091	ENSTRUG00000003612	-	91	87.952	Takifugu_rubripes
ENSORLG00000007314	smg7	100	71.263	ENSTNIG00000002802	smg7	100	70.248	Tetraodon_nigroviridis
ENSORLG00000007314	smg7	79	66.286	ENSTBEG00000003220	SMG7	75	66.286	Tupaia_belangeri
ENSORLG00000007314	smg7	70	92.763	ENSTTRG00000014778	SMG7	94	60.794	Tursiops_truncatus
ENSORLG00000007314	smg7	96	62.196	ENSUAMG00000017473	SMG7	100	61.656	Ursus_americanus
ENSORLG00000007314	smg7	96	62.360	ENSUMAG00000016389	SMG7	100	61.843	Ursus_maritimus
ENSORLG00000007314	smg7	70	92.763	ENSVVUG00000008976	SMG7	95	66.827	Vulpes_vulpes
ENSORLG00000007314	smg7	70	89.474	ENSXETG00000012528	smg7	99	59.351	Xenopus_tropicalis
ENSORLG00000007314	smg7	100	79.298	ENSXMAG00000007123	smg7	100	78.772	Xiphophorus_maculatus