EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000008001 (Gene tree)
Gene ID: 101174914
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein A1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 3135 bases
Position: chr7:12838535-12841669
Accession: 101174914
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000010039	RRM_1	PF00076.22	4.4e-36	1	2
ENSORLP00000010039	RRM_1	PF00076.22	4.4e-36	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000010040	-	1925	XM_004070470	ENSORLP00000010039	329 (aa)	XP_004070518	H2LVA9

Gene Model

Click here to download ENSORLG00000008001's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000008001's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000008001	-	93	35.106	ENSORLG00000009671	msi2a	56	41.279
ENSORLG00000008001	-	55	52.809	ENSORLG00000025015	-	66	52.809
ENSORLG00000008001	-	53	51.744	ENSORLG00000026571	-	92	51.744
ENSORLG00000008001	-	56	51.913	ENSORLG00000024157	-	63	51.913
ENSORLG00000008001	-	54	53.448	ENSORLG00000023176	-	58	53.448
ENSORLG00000008001	-	56	51.351	ENSORLG00000027074	-	83	51.075
ENSORLG00000008001	-	56	42.135	ENSORLG00000029593	MSI1	55	42.529
ENSORLG00000008001	-	61	35.000	ENSORLG00000005188	tardbpl	50	35.000
ENSORLG00000008001	-	57	40.860	ENSORLG00000019978	-	51	41.209
ENSORLG00000008001	-	55	52.273	ENSORLG00000029240	-	89	53.179
ENSORLG00000008001	-	54	50.568	ENSORLG00000023542	-	61	50.568
ENSORLG00000008001	-	53	39.306	ENSORLG00000026044	hnrnpabb	56	37.705
ENSORLG00000008001	-	52	38.824	ENSORLG00000005327	hnrnpaba	52	37.778
ENSORLG00000008001	-	55	53.371	ENSORLG00000030284	-	66	53.371
ENSORLG00000008001	-	73	38.430	ENSORLG00000001833	hnrnpd	67	39.891
ENSORLG00000008001	-	55	52.809	ENSORLG00000025332	-	66	52.809
ENSORLG00000008001	-	59	82.051	ENSORLG00000017561	hnrnpa3	90	64.821

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000008001	-	68	95.982	ENSAPOG00000019369	-	90	88.372	Acanthochromis_polyacanthus
ENSORLG00000008001	-	53	57.143	ENSACIG00000021815	-	87	56.180	Amphilophus_citrinellus
ENSORLG00000008001	-	68	95.982	ENSAOCG00000005289	-	100	89.222	Amphiprion_ocellaris
ENSORLG00000008001	-	68	95.982	ENSAPEG00000004179	-	100	89.222	Amphiprion_percula
ENSORLG00000008001	-	100	92.920	ENSATEG00000022918	hnrnpa1a	100	92.920	Anabas_testudineus
ENSORLG00000008001	-	53	59.748	ENSATEG00000003423	-	75	59.748	Anabas_testudineus
ENSORLG00000008001	-	68	94.248	ENSACLG00000006940	-	91	89.836	Astatotilapia_calliptera
ENSORLG00000008001	-	56	85.326	ENSAMXG00000006296	hnrnpa1a	88	58.967	Astyanax_mexicanus
ENSORLG00000008001	-	55	63.277	ENSAMXG00000037730	-	85	54.795	Astyanax_mexicanus
ENSORLG00000008001	-	100	81.325	ENSCSEG00000007589	hnrnpa1a	99	79.118	Cynoglossus_semilaevis
ENSORLG00000008001	-	56	54.749	ENSCSEG00000014051	-	74	54.144	Cynoglossus_semilaevis
ENSORLG00000008001	-	69	92.920	ENSCVAG00000012637	hnrnpa1a	90	81.967	Cyprinodon_variegatus
ENSORLG00000008001	-	58	81.250	ENSDARG00000011020	hnrnpa1a	82	61.635	Danio_rerio
ENSORLG00000008001	-	57	56.477	ENSDORG00000026425	-	79	48.000	Dipodomys_ordii
ENSORLG00000008001	-	59	89.691	ENSELUG00000007372	-	51	90.710	Esox_lucius
ENSORLG00000008001	-	56	61.667	ENSGMOG00000020353	-	94	61.667	Gadus_morhua
ENSORLG00000008001	-	54	54.494	ENSGAFG00000016803	-	54	54.190	Gambusia_affinis
ENSORLG00000008001	-	90	82.951	ENSGAFG00000007751	-	90	82.295	Gambusia_affinis
ENSORLG00000008001	-	64	92.697	ENSGACG00000009435	-	87	80.755	Gasterosteus_aculeatus
ENSORLG00000008001	-	68	94.248	ENSHBUG00000005647	hnrnpa1a	91	90.132	Haplochromis_burtoni
ENSORLG00000008001	-	60	83.163	ENSIPUG00000002023	hnrnpa1a	76	86.286	Ictalurus_punctatus
ENSORLG00000008001	-	56	62.360	ENSIPUG00000001991	-	76	62.360	Ictalurus_punctatus
ENSORLG00000008001	-	59	84.021	ENSIPUG00000022440	-	71	86.061	Ictalurus_punctatus
ENSORLG00000008001	-	68	95.536	ENSKMAG00000020859	-	89	89.369	Kryptolebias_marmoratus
ENSORLG00000008001	-	68	91.593	ENSLBEG00000010010	hnrnpa1a	91	82.222	Labrus_bergylta
ENSORLG00000008001	-	57	71.892	ENSMFAG00000028351	-	90	60.596	Macaca_fascicularis
ENSORLG00000008001	-	95	91.743	ENSMAMG00000007606	-	95	91.743	Mastacembelus_armatus
ENSORLG00000008001	-	68	94.248	ENSMZEG00005027173	hnrnpa1a	91	90.132	Maylandia_zebra
ENSORLG00000008001	-	83	75.824	ENSMMOG00000008251	hnrnpa1a	91	87.727	Mola_mola
ENSORLG00000008001	-	100	91.329	ENSMALG00000014091	hnrnpa1a	100	91.329	Monopterus_albus
ENSORLG00000008001	-	54	57.062	ENSMALG00000008886	-	86	57.062	Monopterus_albus
ENSORLG00000008001	-	58	58.511	ENSNBRG00000014469	-	82	60.227	Neolamprologus_brichardi
ENSORLG00000008001	-	68	94.248	ENSNBRG00000018441	-	91	90.099	Neolamprologus_brichardi
ENSORLG00000008001	-	54	52.273	ENSORLG00020022498	-	80	52.874	Oryzias_latipes_hni
ENSORLG00000008001	-	100	100.000	ENSORLG00020006582	hnrnpa1a	100	100.000	Oryzias_latipes_hni
ENSORLG00000008001	-	53	52.023	ENSORLG00020006043	-	59	51.724	Oryzias_latipes_hni
ENSORLG00000008001	-	100	99.696	ENSORLG00015022294	-	100	99.696	Oryzias_latipes_hsok
ENSORLG00000008001	-	100	98.485	ENSOMEG00000015959	-	100	98.485	Oryzias_melastigma
ENSORLG00000008001	-	71	80.769	ENSPMGG00000011804	hnrnpa1a	67	95.604	Periophthalmus_magnuspinnatus
ENSORLG00000008001	-	57	56.831	ENSPMGG00000016392	-	93	58.101	Periophthalmus_magnuspinnatus
ENSORLG00000008001	-	69	96.018	ENSPFOG00000001825	-	100	83.186	Poecilia_formosa
ENSORLG00000008001	-	69	96.018	ENSPMEG00000002425	-	100	83.186	Poecilia_mexicana
ENSORLG00000008001	-	58	58.511	ENSPNYG00000020729	-	90	60.227	Pundamilia_nyererei
ENSORLG00000008001	-	53	86.842	ENSPNAG00000007752	hnrnpa1a	72	85.635	Pygocentrus_nattereri
ENSORLG00000008001	-	57	86.096	ENSPNAG00000021630	-	57	85.027	Pygocentrus_nattereri
ENSORLG00000008001	-	74	94.413	ENSSMAG00000004641	hnrnpa1a	90	80.442	Scophthalmus_maximus
ENSORLG00000008001	-	53	56.250	ENSSMAG00000010246	-	78	56.250	Scophthalmus_maximus
ENSORLG00000008001	-	54	59.639	ENSSMAG00000010279	-	93	59.639	Scophthalmus_maximus
ENSORLG00000008001	-	90	96.373	ENSSDUG00000013908	hnrnpa1a	85	100.000	Seriola_dumerili
ENSORLG00000008001	-	54	60.819	ENSSDUG00000002431	-	82	60.116	Seriola_dumerili
ENSORLG00000008001	-	89	97.283	ENSSLDG00000003718	hnrnpa1a	85	96.257	Seriola_lalandi_dorsalis
ENSORLG00000008001	-	91	90.698	ENSSPAG00000018518	-	90	90.268	Stegastes_partitus
ENSORLG00000008001	-	68	89.778	ENSTRUG00000020491	-	91	81.940	Takifugu_rubripes
ENSORLG00000008001	-	74	49.167	ENSTNIG00000007398	-	84	45.878	Tetraodon_nigroviridis
ENSORLG00000008001	-	83	79.044	ENSXCOG00000009001	-	92	93.056	Xiphophorus_couchianus
ENSORLG00000008001	-	69	96.460	ENSXMAG00000008076	-	90	82.085	Xiphophorus_maculatus