EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000008033 (Gene tree)
Gene ID: 101174024
Gene Symbol: RNPS1
Alias: -
Full Name: RNA binding protein with serine rich domain 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 3480 bases
Position: chr8:11023989-11027468
Accession: 101174024
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000010076	RRM_1	PF00076.22	5.8e-18	1	1
ENSORLP00000038148	RRM_1	PF00076.22	9.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000029412	RNPS1-202	2075	XM_004071423	ENSORLP00000038148	273 (aa)	XP_004071471	UPI0000EA0E01
ENSORLT00000010077	RNPS1-201	636	-	ENSORLP00000010076	211 (aa)	-	H2LVE5

Gene Model

Click here to download ENSORLG00000008033's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03013	RNA transport	KEGG
ola03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000008033's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000008033	RNPS1	94	75.490	ENSAPOG00000017310	RNPS1	74	73.684	Acanthochromis_polyacanthus
ENSORLG00000008033	RNPS1	94	70.936	ENSACIG00000014367	-	77	70.755	Amphilophus_citrinellus
ENSORLG00000008033	RNPS1	94	70.388	ENSAOCG00000002404	RNPS1	83	75.325	Amphiprion_ocellaris
ENSORLG00000008033	RNPS1	94	70.388	ENSAPEG00000006497	RNPS1	80	75.217	Amphiprion_percula
ENSORLG00000008033	RNPS1	94	75.728	ENSATEG00000024267	RNPS1	83	74.026	Anabas_testudineus
ENSORLG00000008033	RNPS1	51	64.486	ENSANAG00000028802	RNPS1	52	79.817	Aotus_nancymaae
ENSORLG00000008033	RNPS1	94	76.961	ENSACLG00000025942	RNPS1	82	75.546	Astatotilapia_calliptera
ENSORLG00000008033	RNPS1	82	68.421	ENSACLG00000021537	-	86	68.421	Astatotilapia_calliptera
ENSORLG00000008033	RNPS1	53	82.883	ENSAMXG00000037447	RNPS1	73	67.647	Astyanax_mexicanus
ENSORLG00000008033	RNPS1	51	64.486	ENSCCAG00000034480	RNPS1	52	79.817	Cebus_capucinus
ENSORLG00000008033	RNPS1	51	65.421	ENSCATG00000013756	RNPS1	52	79.817	Cercocebus_atys
ENSORLG00000008033	RNPS1	94	60.784	ENSCATG00000042361	-	53	77.064	Cercocebus_atys
ENSORLG00000008033	RNPS1	51	65.421	ENSCANG00000041307	RNPS1	52	79.817	Colobus_angolensis_palliatus
ENSORLG00000008033	RNPS1	94	73.039	ENSCSEG00000000402	RNPS1	76	73.684	Cynoglossus_semilaevis
ENSORLG00000008033	RNPS1	94	67.476	ENSCSEG00000015997	RNPS1	80	71.304	Cynoglossus_semilaevis
ENSORLG00000008033	RNPS1	94	71.220	ENSCVAG00000010868	RNPS1	77	76.279	Cyprinodon_variegatus
ENSORLG00000008033	RNPS1	95	67.633	ENSDARG00000100188	RNPS1	83	66.667	Danio_rerio
ENSORLG00000008033	RNPS1	95	67.633	ENSDARG00000116743	rnps1	83	66.667	Danio_rerio
ENSORLG00000008033	RNPS1	50	80.000	ENSELUG00000015003	RNPS1	77	68.396	Esox_lucius
ENSORLG00000008033	RNPS1	94	71.359	ENSFHEG00000011705	RNPS1	77	72.685	Fundulus_heteroclitus
ENSORLG00000008033	RNPS1	94	69.756	ENSGAFG00000005457	RNPS1	77	74.884	Gambusia_affinis
ENSORLG00000008033	RNPS1	94	74.879	ENSGACG00000011261	RNPS1	83	76.293	Gasterosteus_aculeatus
ENSORLG00000008033	RNPS1	82	68.421	ENSHBUG00000017337	-	82	68.421	Haplochromis_burtoni
ENSORLG00000008033	RNPS1	94	76.471	ENSHBUG00000002494	RNPS1	82	75.109	Haplochromis_burtoni
ENSORLG00000008033	RNPS1	94	66.351	ENSHCOG00000004424	RNPS1	83	69.915	Hippocampus_comes
ENSORLG00000008033	RNPS1	94	68.116	ENSIPUG00000011746	rnps1	91	66.949	Ictalurus_punctatus
ENSORLG00000008033	RNPS1	53	72.973	ENSJJAG00000000532	-	53	76.147	Jaculus_jaculus
ENSORLG00000008033	RNPS1	94	73.171	ENSKMAG00000009135	RNPS1	82	76.087	Kryptolebias_marmoratus
ENSORLG00000008033	RNPS1	87	76.087	ENSLBEG00000024091	RNPS1	77	72.038	Labrus_bergylta
ENSORLG00000008033	RNPS1	51	65.741	ENSMFAG00000042142	RNPS1	52	79.817	Macaca_fascicularis
ENSORLG00000008033	RNPS1	51	65.741	ENSMMUG00000019238	-	52	79.817	Macaca_mulatta
ENSORLG00000008033	RNPS1	51	65.421	ENSMLEG00000036928	RNPS1	52	79.817	Mandrillus_leucophaeus
ENSORLG00000008033	RNPS1	94	74.757	ENSMAMG00000021609	-	83	73.160	Mastacembelus_armatus
ENSORLG00000008033	RNPS1	94	71.707	ENSMAMG00000021148	-	81	68.421	Mastacembelus_armatus
ENSORLG00000008033	RNPS1	94	76.961	ENSMZEG00005012742	RNPS1	82	75.546	Maylandia_zebra
ENSORLG00000008033	RNPS1	82	68.559	ENSMZEG00005006256	-	83	68.559	Maylandia_zebra
ENSORLG00000008033	RNPS1	94	71.642	ENSMMOG00000010863	RNPS1	77	72.038	Mola_mola
ENSORLG00000008033	RNPS1	53	83.784	ENSMALG00000016619	RNPS1	73	75.000	Monopterus_albus
ENSORLG00000008033	RNPS1	94	74.752	ENSNBRG00000023437	RNPS1	77	73.460	Neolamprologus_brichardi
ENSORLG00000008033	RNPS1	82	68.559	ENSNBRG00000014540	-	85	68.559	Neolamprologus_brichardi
ENSORLG00000008033	RNPS1	82	68.559	ENSONIG00000019627	-	83	68.559	Oreochromis_niloticus
ENSORLG00000008033	RNPS1	99	99.265	ENSORLG00020020207	RNPS1	99	99.265	Oryzias_latipes_hni
ENSORLG00000008033	RNPS1	99	99.632	ENSORLG00015000305	-	99	99.632	Oryzias_latipes_hsok
ENSORLG00000008033	RNPS1	61	63.566	ENSPTIG00000015643	RNPS1	57	79.817	Panthera_tigris_altaica
ENSORLG00000008033	RNPS1	51	65.421	ENSPANG00000015748	RNPS1	52	79.817	Papio_anubis
ENSORLG00000008033	RNPS1	88	75.135	ENSPMGG00000015888	-	76	74.038	Periophthalmus_magnuspinnatus
ENSORLG00000008033	RNPS1	61	68.217	ENSPCIG00000016114	-	53	77.982	Phascolarctos_cinereus
ENSORLG00000008033	RNPS1	94	70.732	ENSPFOG00000009978	RNPS1	73	77.561	Poecilia_formosa
ENSORLG00000008033	RNPS1	94	70.732	ENSPLAG00000009343	RNPS1	73	77.561	Poecilia_latipinna
ENSORLG00000008033	RNPS1	94	70.732	ENSPMEG00000008552	RNPS1	73	77.561	Poecilia_mexicana
ENSORLG00000008033	RNPS1	94	70.732	ENSPREG00000001843	RNPS1	73	77.561	Poecilia_reticulata
ENSORLG00000008033	RNPS1	51	65.421	ENSPCOG00000005478	RNPS1	52	79.817	Propithecus_coquereli
ENSORLG00000008033	RNPS1	94	76.961	ENSPNYG00000000585	RNPS1	82	75.546	Pundamilia_nyererei
ENSORLG00000008033	RNPS1	94	71.498	ENSSFOG00015022746	RNPS1	85	67.797	Scleropages_formosus
ENSORLG00000008033	RNPS1	94	76.847	ENSSMAG00000016933	RNPS1	82	73.684	Scophthalmus_maximus
ENSORLG00000008033	RNPS1	94	72.816	ENSSDUG00000011453	RNPS1	83	71.429	Seriola_dumerili
ENSORLG00000008033	RNPS1	94	74.877	ENSSLDG00000021341	RNPS1	82	73.661	Seriola_lalandi_dorsalis
ENSORLG00000008033	RNPS1	87	76.596	ENSSPAG00000009383	RNPS1	83	74.026	Stegastes_partitus
ENSORLG00000008033	RNPS1	94	70.192	ENSTRUG00000008602	RNPS1	83	72.103	Takifugu_rubripes
ENSORLG00000008033	RNPS1	94	70.192	ENSTNIG00000009753	RNPS1	81	71.983	Tetraodon_nigroviridis
ENSORLG00000008033	RNPS1	94	70.244	ENSXMAG00000004827	RNPS1	82	76.522	Xiphophorus_maculatus