EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000008291 (Gene tree)
Gene ID: 101175654
Gene Symbol: srl
Alias: -
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 10603 bases
Position: chr8:11231598-11242200
Accession: 101175654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000042875	MMR_HSR1	PF01926.23	1.5e-08	1	1
ENSORLP00000032142	MMR_HSR1	PF01926.23	1.6e-08	1	1
ENSORLP00000010403	MMR_HSR1	PF01926.23	1.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000046658	-	1829	-	ENSORLP00000042875	423 (aa)	-	-
ENSORLT00000010404	-	2018	XM_004071431	ENSORLP00000010403	486 (aa)	XP_004071479	H2LWB6
ENSORLT00000044852	-	2054	XM_004071430	ENSORLP00000032142	498 (aa)	XP_004071478	UPI0009DA846B

Gene Model

Click here to download ENSORLG00000008291's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000008291's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000008291	srl	90	34.190	ENSORLG00000002244	ehd2b	74	33.254
ENSORLG00000008291	srl	85	33.518	ENSORLG00000017118	ehd3	73	32.840
ENSORLG00000008291	srl	89	31.937	ENSORLG00000012013	-	75	30.435
ENSORLG00000008291	srl	93	76.650	ENSORLG00000015064	SRL	97	75.169
ENSORLG00000008291	srl	91	33.247	ENSORLG00000010433	ehd4	74	31.981
ENSORLG00000008291	srl	89	31.398	ENSORLG00000022561	ehd1a	73	30.864

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000008291	srl	92	84.794	ENSG00000185739	SRL	99	83.023	Homo_sapiens
ENSORLG00000008291	srl	93	79.442	ENSAPOG00000012432	SRL	99	77.878	Acanthochromis_polyacanthus
ENSORLG00000008291	srl	97	95.754	ENSAPOG00000018093	srl	100	95.754	Acanthochromis_polyacanthus
ENSORLG00000008291	srl	91	85.271	ENSAMEG00000010862	SRL	50	82.353	Ailuropoda_melanoleuca
ENSORLG00000008291	srl	92	79.381	ENSACIG00000015419	SRL	99	75.893	Amphilophus_citrinellus
ENSORLG00000008291	srl	92	98.454	ENSACIG00000015799	srl	99	97.333	Amphilophus_citrinellus
ENSORLG00000008291	srl	92	96.907	ENSAOCG00000007574	srl	100	96.774	Amphiprion_ocellaris
ENSORLG00000008291	srl	93	79.747	ENSAOCG00000017049	SRL	97	78.378	Amphiprion_ocellaris
ENSORLG00000008291	srl	93	75.381	ENSAPEG00000006533	SRL	98	73.731	Amphiprion_percula
ENSORLG00000008291	srl	97	96.066	ENSAPEG00000006911	srl	100	96.066	Amphiprion_percula
ENSORLG00000008291	srl	97	95.652	ENSATEG00000024315	srl	100	95.652	Anabas_testudineus
ENSORLG00000008291	srl	93	77.396	ENSATEG00000009643	SRL	52	76.754	Anabas_testudineus
ENSORLG00000008291	srl	93	84.733	ENSACAG00000016380	SRL	90	80.285	Anolis_carolinensis
ENSORLG00000008291	srl	97	96.687	ENSACLG00000027685	srl	100	95.643	Astatotilapia_calliptera
ENSORLG00000008291	srl	93	76.904	ENSACLG00000024674	SRL	57	75.000	Astatotilapia_calliptera
ENSORLG00000008291	srl	99	89.940	ENSAMXG00000018789	srl	95	89.940	Astyanax_mexicanus
ENSORLG00000008291	srl	87	81.148	ENSAMXG00000038693	SRL	100	74.172	Astyanax_mexicanus
ENSORLG00000008291	srl	91	86.269	ENSBTAG00000001078	SRL	57	81.898	Bos_taurus
ENSORLG00000008291	srl	92	84.794	ENSCJAG00000019750	SRL	100	79.493	Callithrix_jacchus
ENSORLG00000008291	srl	92	85.052	ENSCAFG00000019233	SRL	85	80.702	Canis_familiaris
ENSORLG00000008291	srl	91	85.271	ENSCAFG00020025024	SRL	56	81.236	Canis_lupus_dingo
ENSORLG00000008291	srl	91	86.269	ENSCHIG00000017927	SRL	57	81.898	Capra_hircus
ENSORLG00000008291	srl	92	85.309	ENSTSYG00000007919	SRL	99	83.721	Carlito_syrichta
ENSORLG00000008291	srl	92	84.794	ENSCPOG00000012643	SRL	100	79.449	Cavia_porcellus
ENSORLG00000008291	srl	92	84.536	ENSCCAG00000032646	SRL	100	84.433	Cebus_capucinus
ENSORLG00000008291	srl	92	84.794	ENSCATG00000032227	-	100	79.493	Cercocebus_atys
ENSORLG00000008291	srl	92	84.794	ENSCLAG00000016242	SRL	100	79.661	Chinchilla_lanigera
ENSORLG00000008291	srl	91	85.974	ENSCHOG00000001618	SRL	52	85.974	Choloepus_hoffmanni
ENSORLG00000008291	srl	95	83.000	ENSCPBG00000026371	SRL	99	79.710	Chrysemys_picta_bellii
ENSORLG00000008291	srl	85	63.889	ENSCING00000005231	-	95	59.813	Ciona_intestinalis
ENSORLG00000008291	srl	92	84.794	ENSCANG00000035872	SRL	99	83.023	Colobus_angolensis_palliatus
ENSORLG00000008291	srl	92	85.309	ENSCGRG00001016630	Srl	100	80.297	Cricetulus_griseus_chok1gshd
ENSORLG00000008291	srl	92	85.309	ENSCGRG00000005458	Srl	100	80.297	Cricetulus_griseus_crigri
ENSORLG00000008291	srl	92	78.149	ENSCSEG00000011866	SRL	94	72.059	Cynoglossus_semilaevis
ENSORLG00000008291	srl	97	95.319	ENSCSEG00000016151	srl	100	95.319	Cynoglossus_semilaevis
ENSORLG00000008291	srl	93	77.228	ENSCVAG00000022465	SRL	61	75.922	Cyprinodon_variegatus
ENSORLG00000008291	srl	97	95.021	ENSCVAG00000003513	srl	100	95.021	Cyprinodon_variegatus
ENSORLG00000008291	srl	97	89.834	ENSDARG00000104587	srl	100	89.834	Danio_rerio
ENSORLG00000008291	srl	90	78.125	ENSDARG00000112959	CABZ01072309.1	100	78.385	Danio_rerio
ENSORLG00000008291	srl	91	85.271	ENSDNOG00000011643	SRL	54	81.278	Dasypus_novemcinctus
ENSORLG00000008291	srl	92	84.794	ENSDORG00000014807	Srl	100	80.085	Dipodomys_ordii
ENSORLG00000008291	srl	88	65.508	ENSEBUG00000015937	srl	94	65.508	Eptatretus_burgeri
ENSORLG00000008291	srl	91	85.492	ENSEASG00005000942	SRL	55	81.457	Equus_asinus_asinus
ENSORLG00000008291	srl	97	79.873	ENSECAG00000024219	SRL	99	79.873	Equus_caballus
ENSORLG00000008291	srl	97	86.653	ENSELUG00000015616	srl	100	86.653	Esox_lucius
ENSORLG00000008291	srl	92	84.794	ENSFCAG00000022075	SRL	100	78.858	Felis_catus
ENSORLG00000008291	srl	91	86.788	ENSFALG00000004328	SRL	63	83.409	Ficedula_albicollis
ENSORLG00000008291	srl	92	85.309	ENSFDAG00000006199	SRL	100	80.508	Fukomys_damarensis
ENSORLG00000008291	srl	93	78.426	ENSFHEG00000011854	SRL	99	77.252	Fundulus_heteroclitus
ENSORLG00000008291	srl	97	95.436	ENSFHEG00000011239	srl	100	95.436	Fundulus_heteroclitus
ENSORLG00000008291	srl	93	93.112	ENSGMOG00000014954	srl	100	91.850	Gadus_morhua
ENSORLG00000008291	srl	93	85.969	ENSGALG00000038884	SRL	99	80.679	Gallus_gallus
ENSORLG00000008291	srl	93	79.442	ENSGAFG00000016984	SRL	99	78.378	Gambusia_affinis
ENSORLG00000008291	srl	97	95.851	ENSGAFG00000000010	srl	100	95.851	Gambusia_affinis
ENSORLG00000008291	srl	93	95.153	ENSGACG00000011332	srl	100	95.385	Gasterosteus_aculeatus
ENSORLG00000008291	srl	92	84.794	ENSGGOG00000011312	-	100	79.281	Gorilla_gorilla
ENSORLG00000008291	srl	97	96.687	ENSHBUG00000007581	srl	100	95.643	Haplochromis_burtoni
ENSORLG00000008291	srl	93	77.150	ENSHBUG00000015710	SRL	58	74.359	Haplochromis_burtoni
ENSORLG00000008291	srl	92	85.567	ENSHGLG00000015271	SRL	100	80.508	Heterocephalus_glaber_female
ENSORLG00000008291	srl	92	85.567	ENSHGLG00100019378	SRL	100	80.508	Heterocephalus_glaber_male
ENSORLG00000008291	srl	93	75.616	ENSHCOG00000001012	SRL	50	74.725	Hippocampus_comes
ENSORLG00000008291	srl	98	94.549	ENSHCOG00000008687	srl	99	96.205	Hippocampus_comes
ENSORLG00000008291	srl	97	90.269	ENSIPUG00000012513	srl	100	90.269	Ictalurus_punctatus
ENSORLG00000008291	srl	91	70.649	ENSIPUG00000011609	SRL	95	69.495	Ictalurus_punctatus
ENSORLG00000008291	srl	92	85.052	ENSSTOG00000021151	-	100	79.661	Ictidomys_tridecemlineatus
ENSORLG00000008291	srl	97	80.720	ENSJJAG00000016400	Srl	100	80.720	Jaculus_jaculus
ENSORLG00000008291	srl	95	94.492	ENSKMAG00000014115	srl	95	94.492	Kryptolebias_marmoratus
ENSORLG00000008291	srl	93	78.173	ENSKMAG00000019537	SRL	100	77.098	Kryptolebias_marmoratus
ENSORLG00000008291	srl	91	78.351	ENSLBEG00000013811	SRL	95	76.471	Labrus_bergylta
ENSORLG00000008291	srl	97	95.329	ENSLBEG00000026643	srl	100	95.329	Labrus_bergylta
ENSORLG00000008291	srl	93	86.260	ENSLACG00000002825	SRL	98	84.389	Latimeria_chalumnae
ENSORLG00000008291	srl	92	91.753	ENSLOCG00000002644	srl	94	89.391	Lepisosteus_oculatus
ENSORLG00000008291	srl	91	85.271	ENSLAFG00000006329	SRL	50	82.353	Loxodonta_africana
ENSORLG00000008291	srl	92	84.794	ENSMFAG00000037383	SRL	99	83.023	Macaca_fascicularis
ENSORLG00000008291	srl	92	84.794	ENSMNEG00000019236	-	95	81.153	Macaca_nemestrina
ENSORLG00000008291	srl	92	83.247	ENSMLEG00000032156	SRL	100	73.150	Mandrillus_leucophaeus
ENSORLG00000008291	srl	92	96.392	ENSMAMG00000023322	srl	96	95.575	Mastacembelus_armatus
ENSORLG00000008291	srl	93	76.904	ENSMAMG00000013756	SRL	53	76.211	Mastacembelus_armatus
ENSORLG00000008291	srl	93	76.904	ENSMZEG00005004010	SRL	59	74.145	Maylandia_zebra
ENSORLG00000008291	srl	97	96.687	ENSMZEG00005004548	srl	100	95.643	Maylandia_zebra
ENSORLG00000008291	srl	91	86.305	ENSMGAG00000009342	SRL	96	83.377	Meleagris_gallopavo
ENSORLG00000008291	srl	92	85.825	ENSMICG00000032307	SRL	100	79.915	Microcebus_murinus
ENSORLG00000008291	srl	92	84.536	ENSMOCG00000008208	Srl	100	79.449	Microtus_ochrogaster
ENSORLG00000008291	srl	93	94.889	ENSMMOG00000013970	srl	100	94.889	Mola_mola
ENSORLG00000008291	srl	94	78.643	ENSMMOG00000021572	SRL	99	74.945	Mola_mola
ENSORLG00000008291	srl	91	86.788	ENSMODG00000016380	-	50	83.900	Monodelphis_domestica
ENSORLG00000008291	srl	92	78.005	ENSMALG00000000670	SRL	98	78.043	Monopterus_albus
ENSORLG00000008291	srl	97	94.255	ENSMALG00000005039	srl	100	94.255	Monopterus_albus
ENSORLG00000008291	srl	92	85.567	MGP_CAROLIEiJ_G0020400	Srl	100	81.144	Mus_caroli
ENSORLG00000008291	srl	92	85.567	ENSMUSG00000022519	Srl	100	81.144	Mus_musculus
ENSORLG00000008291	srl	92	85.567	MGP_SPRETEiJ_G0021294	Srl	100	81.144	Mus_spretus
ENSORLG00000008291	srl	91	85.271	ENSMPUG00000015025	SRL	55	81.153	Mustela_putorius_furo
ENSORLG00000008291	srl	91	85.530	ENSMLUG00000030733	SRL	57	82.040	Myotis_lucifugus
ENSORLG00000008291	srl	92	85.309	ENSNGAG00000019741	Srl	100	80.720	Nannospalax_galili
ENSORLG00000008291	srl	97	96.178	ENSNBRG00000023775	srl	100	95.106	Neolamprologus_brichardi
ENSORLG00000008291	srl	93	76.658	ENSNBRG00000002422	SRL	57	75.455	Neolamprologus_brichardi
ENSORLG00000008291	srl	92	84.794	ENSNLEG00000029051	SRL	100	73.996	Nomascus_leucogenys
ENSORLG00000008291	srl	91	85.492	ENSOPRG00000000477	-	53	75.551	Ochotona_princeps
ENSORLG00000008291	srl	92	85.309	ENSODEG00000013256	SRL	100	79.873	Octodon_degus
ENSORLG00000008291	srl	97	96.687	ENSONIG00000005192	srl	100	95.643	Oreochromis_niloticus
ENSORLG00000008291	srl	93	76.904	ENSORLG00020018173	SRL	97	75.395	Oryzias_latipes_hni
ENSORLG00000008291	srl	100	99.598	ENSORLG00020019784	srl	88	99.598	Oryzias_latipes_hni
ENSORLG00000008291	srl	93	76.904	ENSORLG00015019063	SRL	97	75.395	Oryzias_latipes_hsok
ENSORLG00000008291	srl	100	99.197	ENSORLG00015009342	srl	100	99.197	Oryzias_latipes_hsok
ENSORLG00000008291	srl	97	98.755	ENSOMEG00000010006	srl	100	98.755	Oryzias_melastigma
ENSORLG00000008291	srl	93	74.939	ENSOMEG00000005682	SRL	53	73.961	Oryzias_melastigma
ENSORLG00000008291	srl	91	84.755	ENSOGAG00000029266	SRL	55	80.617	Otolemur_garnettii
ENSORLG00000008291	srl	91	86.269	ENSOARG00000003074	SRL	56	82.222	Ovis_aries
ENSORLG00000008291	srl	92	84.794	ENSPPAG00000024919	-	99	83.023	Pan_paniscus
ENSORLG00000008291	srl	92	84.794	ENSPPRG00000010274	SRL	99	82.791	Panthera_pardus
ENSORLG00000008291	srl	92	84.794	ENSPTIG00000015162	SRL	99	82.791	Panthera_tigris_altaica
ENSORLG00000008291	srl	92	84.794	ENSPTRG00000007712	SRL	99	83.023	Pan_troglodytes
ENSORLG00000008291	srl	92	84.794	ENSPANG00000013804	SRL	98	81.099	Papio_anubis
ENSORLG00000008291	srl	99	77.823	ENSPKIG00000024974	SRL	97	77.823	Paramormyrops_kingsleyae
ENSORLG00000008291	srl	97	89.897	ENSPKIG00000006405	srl	100	89.897	Paramormyrops_kingsleyae
ENSORLG00000008291	srl	91	85.492	ENSPSIG00000008586	SRL	50	81.596	Pelodiscus_sinensis
ENSORLG00000008291	srl	92	77.577	ENSPMGG00000023505	-	99	75.566	Periophthalmus_magnuspinnatus
ENSORLG00000008291	srl	92	96.134	ENSPMGG00000021081	srl	97	94.469	Periophthalmus_magnuspinnatus
ENSORLG00000008291	srl	92	85.052	ENSPEMG00000015842	Srl	100	80.085	Peromyscus_maniculatus_bairdii
ENSORLG00000008291	srl	91	70.588	ENSPMAG00000004786	srl	99	67.963	Petromyzon_marinus
ENSORLG00000008291	srl	91	86.305	ENSPCIG00000012128	SRL	98	82.444	Phascolarctos_cinereus
ENSORLG00000008291	srl	100	96.410	ENSPFOG00000011408	srl	99	94.779	Poecilia_formosa
ENSORLG00000008291	srl	92	96.907	ENSPLAG00000008017	srl	98	95.778	Poecilia_latipinna
ENSORLG00000008291	srl	91	79.275	ENSPLAG00000002932	SRL	99	77.027	Poecilia_latipinna
ENSORLG00000008291	srl	94	74.786	ENSPMEG00000005890	SRL	61	74.514	Poecilia_mexicana
ENSORLG00000008291	srl	100	96.907	ENSPMEG00000006745	srl	98	95.778	Poecilia_mexicana
ENSORLG00000008291	srl	93	78.680	ENSPREG00000000315	SRL	100	77.283	Poecilia_reticulata
ENSORLG00000008291	srl	100	97.165	ENSPREG00000007751	srl	100	95.787	Poecilia_reticulata
ENSORLG00000008291	srl	92	84.794	ENSPPYG00000007053	SRL	98	84.487	Pongo_abelii
ENSORLG00000008291	srl	91	85.492	ENSPCAG00000003378	-	50	83.447	Procavia_capensis
ENSORLG00000008291	srl	92	85.567	ENSPCOG00000023135	SRL	99	83.721	Propithecus_coquereli
ENSORLG00000008291	srl	91	85.530	ENSPVAG00000006586	SRL	55	81.818	Pteropus_vampyrus
ENSORLG00000008291	srl	93	76.904	ENSPNYG00000003423	SRL	58	74.145	Pundamilia_nyererei
ENSORLG00000008291	srl	97	96.480	ENSPNYG00000001200	srl	100	95.436	Pundamilia_nyererei
ENSORLG00000008291	srl	98	71.967	ENSPNAG00000007361	-	91	75.737	Pygocentrus_nattereri
ENSORLG00000008291	srl	97	90.249	ENSPNAG00000023106	srl	100	90.249	Pygocentrus_nattereri
ENSORLG00000008291	srl	91	85.530	ENSRNOG00000005269	Srl	50	81.718	Rattus_norvegicus
ENSORLG00000008291	srl	91	85.013	ENSRBIG00000042358	SRL	50	80.837	Rhinopithecus_bieti
ENSORLG00000008291	srl	92	84.794	ENSSBOG00000029273	SRL	100	79.493	Saimiri_boliviensis_boliviensis
ENSORLG00000008291	srl	91	86.528	ENSSHAG00000011715	-	53	80.128	Sarcophilus_harrisii
ENSORLG00000008291	srl	97	90.702	ENSSFOG00015009773	srl	100	90.702	Scleropages_formosus
ENSORLG00000008291	srl	92	78.866	ENSSFOG00015021327	SRL	51	75.054	Scleropages_formosus
ENSORLG00000008291	srl	97	94.904	ENSSMAG00000016274	srl	100	94.904	Scophthalmus_maximus
ENSORLG00000008291	srl	93	76.471	ENSSMAG00000002232	SRL	50	75.604	Scophthalmus_maximus
ENSORLG00000008291	srl	92	97.423	ENSSDUG00000010808	srl	98	96.847	Seriola_dumerili
ENSORLG00000008291	srl	92	78.894	ENSSDUG00000009161	SRL	99	78.000	Seriola_dumerili
ENSORLG00000008291	srl	92	78.571	ENSSLDG00000014601	SRL	100	78.289	Seriola_lalandi_dorsalis
ENSORLG00000008291	srl	97	95.851	ENSSLDG00000022024	srl	100	95.851	Seriola_lalandi_dorsalis
ENSORLG00000008291	srl	91	85.271	ENSSPUG00000016859	SRL	99	81.737	Sphenodon_punctatus
ENSORLG00000008291	srl	97	95.868	ENSSPAG00000019105	srl	100	95.868	Stegastes_partitus
ENSORLG00000008291	srl	93	80.203	ENSSPAG00000014254	SRL	98	79.138	Stegastes_partitus
ENSORLG00000008291	srl	91	85.492	ENSSSCG00000007949	SRL	98	82.540	Sus_scrofa
ENSORLG00000008291	srl	86	86.464	ENSTGUG00000016121	-	100	86.464	Taeniopygia_guttata
ENSORLG00000008291	srl	91	86.822	ENSTGUG00000003951	-	97	83.636	Taeniopygia_guttata
ENSORLG00000008291	srl	93	77.919	ENSTRUG00000013310	SRL	55	78.095	Takifugu_rubripes
ENSORLG00000008291	srl	97	95.106	ENSTRUG00000006005	srl	100	95.106	Takifugu_rubripes
ENSORLG00000008291	srl	97	94.468	ENSTNIG00000009739	srl	100	94.468	Tetraodon_nigroviridis
ENSORLG00000008291	srl	91	85.271	ENSUAMG00000005701	SRL	55	82.353	Ursus_americanus
ENSORLG00000008291	srl	91	85.271	ENSUMAG00000002574	SRL	55	82.353	Ursus_maritimus
ENSORLG00000008291	srl	91	85.271	ENSVVUG00000016331	-	50	80.617	Vulpes_vulpes
ENSORLG00000008291	srl	92	84.794	ENSXETG00000017313	srl	98	81.941	Xenopus_tropicalis
ENSORLG00000008291	srl	92	96.907	ENSXCOG00000010424	srl	97	96.217	Xiphophorus_couchianus
ENSORLG00000008291	srl	93	79.188	ENSXCOG00000014584	SRL	100	77.384	Xiphophorus_couchianus
ENSORLG00000008291	srl	100	96.907	ENSXMAG00000004625	srl	99	94.578	Xiphophorus_maculatus
ENSORLG00000008291	srl	93	76.413	ENSXMAG00000027598	SRL	63	75.162	Xiphophorus_maculatus