EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000008391 (Gene tree)
Gene ID: 101168448
Gene Symbol: lsm4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 4048 bases
Position: chr4:13833519-13837566
Accession: 101168448
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000010535	LSM	PF01423.22	1.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000010536	-	1502	XM_004067921	ENSORLP00000010535	144 (aa)	XP_004067969	H2LWP3

Gene Model

Click here to download ENSORLG00000008391's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03018	RNA degradation	KEGG
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000008391's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000008391	lsm4	68	34.314	ENSORLG00000029858	si:ch73-14h10.2	100	34.314
ENSORLG00000008391	lsm4	75	34.259	ENSORLG00000010586	snrpd3l	95	31.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000008391	lsm4	61	97.727	ENSG00000130520	LSM4	99	85.106	Homo_sapiens
ENSORLG00000008391	lsm4	100	90.066	ENSAPOG00000005643	lsm4	100	90.066	Acanthochromis_polyacanthus
ENSORLG00000008391	lsm4	60	97.701	ENSAMEG00000011162	LSM4	93	85.000	Ailuropoda_melanoleuca
ENSORLG00000008391	lsm4	100	91.892	ENSAOCG00000006414	lsm4	100	91.892	Amphiprion_ocellaris
ENSORLG00000008391	lsm4	100	91.275	ENSAPEG00000006238	lsm4	100	91.275	Amphiprion_percula
ENSORLG00000008391	lsm4	100	87.500	ENSATEG00000016559	lsm4	100	88.158	Anabas_testudineus
ENSORLG00000008391	lsm4	61	97.727	ENSANAG00000034659	LSM4	99	85.106	Aotus_nancymaae
ENSORLG00000008391	lsm4	100	91.837	ENSACLG00000022738	lsm4	100	91.837	Astatotilapia_calliptera
ENSORLG00000008391	lsm4	100	87.586	ENSAMXG00000016932	lsm4	100	87.586	Astyanax_mexicanus
ENSORLG00000008391	lsm4	61	97.727	ENSBTAG00000008578	LSM4	99	85.106	Bos_taurus
ENSORLG00000008391	lsm4	58	75.904	WBGene00003078	lsm-4	86	60.484	Caenorhabditis_elegans
ENSORLG00000008391	lsm4	61	97.727	ENSCJAG00000014171	LSM4	99	85.106	Callithrix_jacchus
ENSORLG00000008391	lsm4	61	97.727	ENSCAFG00000014900	LSM4	90	85.106	Canis_familiaris
ENSORLG00000008391	lsm4	61	97.727	ENSCAFG00020012137	LSM4	99	85.106	Canis_lupus_dingo
ENSORLG00000008391	lsm4	60	97.701	ENSCHIG00000010928	LSM4	90	85.000	Capra_hircus
ENSORLG00000008391	lsm4	61	96.591	ENSTSYG00000030906	LSM4	99	84.397	Carlito_syrichta
ENSORLG00000008391	lsm4	61	96.591	ENSCAPG00000014140	LSM4	97	73.154	Cavia_aperea
ENSORLG00000008391	lsm4	61	96.591	ENSCPOG00000024117	LSM4	97	73.154	Cavia_porcellus
ENSORLG00000008391	lsm4	61	97.727	ENSCCAG00000036308	LSM4	99	85.106	Cebus_capucinus
ENSORLG00000008391	lsm4	61	97.727	ENSCATG00000029311	LSM4	99	85.106	Cercocebus_atys
ENSORLG00000008391	lsm4	97	74.820	ENSCLAG00000010828	LSM4	99	83.688	Chinchilla_lanigera
ENSORLG00000008391	lsm4	61	97.727	ENSCSAG00000005370	LSM4	99	85.106	Chlorocebus_sabaeus
ENSORLG00000008391	lsm4	95	83.333	ENSCPBG00000012925	LSM4	100	86.232	Chrysemys_picta_bellii
ENSORLG00000008391	lsm4	60	91.860	ENSCING00000007519	-	91	77.419	Ciona_intestinalis
ENSORLG00000008391	lsm4	60	91.860	ENSCSAVG00000008596	-	98	74.436	Ciona_savignyi
ENSORLG00000008391	lsm4	61	97.727	ENSCANG00000043686	LSM4	99	85.106	Colobus_angolensis_palliatus
ENSORLG00000008391	lsm4	61	94.318	ENSCGRG00001014436	Lsm4	100	76.259	Cricetulus_griseus_chok1gshd
ENSORLG00000008391	lsm4	60	94.253	ENSCGRG00000009398	Lsm4	100	81.159	Cricetulus_griseus_crigri
ENSORLG00000008391	lsm4	100	90.278	ENSCSEG00000016127	lsm4	100	92.361	Cynoglossus_semilaevis
ENSORLG00000008391	lsm4	100	93.056	ENSCVAG00000010601	lsm4	100	93.056	Cyprinodon_variegatus
ENSORLG00000008391	lsm4	90	92.248	ENSCVAG00000021828	lsm4	98	92.248	Cyprinodon_variegatus
ENSORLG00000008391	lsm4	96	84.138	ENSDARG00000023852	lsm4	99	86.897	Danio_rerio
ENSORLG00000008391	lsm4	97	74.101	ENSDORG00000024225	Lsm4	99	82.979	Dipodomys_ordii
ENSORLG00000008391	lsm4	69	80.000	FBgn0032240	CG17768	63	80.412	Drosophila_melanogaster
ENSORLG00000008391	lsm4	51	98.630	ENSETEG00000007762	-	100	83.065	Echinops_telfairi
ENSORLG00000008391	lsm4	52	93.333	ENSEBUG00000003639	-	84	68.504	Eptatretus_burgeri
ENSORLG00000008391	lsm4	61	97.727	ENSECAG00000010141	LSM4	56	85.106	Equus_caballus
ENSORLG00000008391	lsm4	92	90.226	ENSELUG00000012821	lsm4	100	89.552	Esox_lucius
ENSORLG00000008391	lsm4	61	97.727	ENSFCAG00000040580	LSM4	99	85.106	Felis_catus
ENSORLG00000008391	lsm4	94	83.212	ENSFALG00000009478	LSM4	99	86.131	Ficedula_albicollis
ENSORLG00000008391	lsm4	60	97.701	ENSFDAG00000010124	LSM4	99	83.571	Fukomys_damarensis
ENSORLG00000008391	lsm4	99	81.081	ENSGMOG00000007729	lsm4	99	81.879	Gadus_morhua
ENSORLG00000008391	lsm4	95	83.333	ENSGALG00000003385	LSM4	100	86.232	Gallus_gallus
ENSORLG00000008391	lsm4	100	93.750	ENSGAFG00000004903	lsm4	97	91.473	Gambusia_affinis
ENSORLG00000008391	lsm4	100	82.667	ENSGACG00000008140	lsm4	100	86.000	Gasterosteus_aculeatus
ENSORLG00000008391	lsm4	95	83.333	ENSGAGG00000017812	LSM4	100	86.232	Gopherus_agassizii
ENSORLG00000008391	lsm4	61	97.727	ENSGGOG00000012914	-	99	85.106	Gorilla_gorilla
ENSORLG00000008391	lsm4	100	92.466	ENSHBUG00000008858	lsm4	80	92.466	Haplochromis_burtoni
ENSORLG00000008391	lsm4	97	76.596	ENSHGLG00000006568	LSM4	99	84.397	Heterocephalus_glaber_female
ENSORLG00000008391	lsm4	64	97.826	ENSHGLG00100007894	LSM4	99	97.826	Heterocephalus_glaber_male
ENSORLG00000008391	lsm4	100	93.056	ENSHCOG00000008819	lsm4	100	93.056	Hippocampus_comes
ENSORLG00000008391	lsm4	100	88.966	ENSIPUG00000005368	Lsm4	100	88.966	Ictalurus_punctatus
ENSORLG00000008391	lsm4	61	97.727	ENSSTOG00000016494	LSM4	99	85.106	Ictidomys_tridecemlineatus
ENSORLG00000008391	lsm4	61	95.455	ENSJJAG00000017420	Lsm4	99	82.979	Jaculus_jaculus
ENSORLG00000008391	lsm4	100	95.139	ENSKMAG00000005073	lsm4	100	95.139	Kryptolebias_marmoratus
ENSORLG00000008391	lsm4	100	90.604	ENSLBEG00000027930	lsm4	100	90.604	Labrus_bergylta
ENSORLG00000008391	lsm4	97	82.270	ENSLACG00000015861	LSM4	99	86.014	Latimeria_chalumnae
ENSORLG00000008391	lsm4	88	91.339	ENSLOCG00000002025	lsm4	100	86.207	Lepisosteus_oculatus
ENSORLG00000008391	lsm4	60	98.851	ENSLAFG00000017459	LSM4	99	85.507	Loxodonta_africana
ENSORLG00000008391	lsm4	61	97.727	ENSMFAG00000031194	LSM4	99	85.106	Macaca_fascicularis
ENSORLG00000008391	lsm4	61	97.727	ENSMMUG00000004405	LSM4	99	85.106	Macaca_mulatta
ENSORLG00000008391	lsm4	61	97.727	ENSMNEG00000042899	LSM4	99	85.106	Macaca_nemestrina
ENSORLG00000008391	lsm4	61	97.727	ENSMLEG00000027948	LSM4	99	85.106	Mandrillus_leucophaeus
ENSORLG00000008391	lsm4	100	93.750	ENSMAMG00000006190	lsm4	100	93.750	Mastacembelus_armatus
ENSORLG00000008391	lsm4	100	92.466	ENSMZEG00005016420	lsm4	100	92.466	Maylandia_zebra
ENSORLG00000008391	lsm4	94	76.087	ENSMGAG00000004976	LSM4	99	80.435	Meleagris_gallopavo
ENSORLG00000008391	lsm4	69	94.949	ENSMICG00000000222	LSM4	99	84.397	Microcebus_murinus
ENSORLG00000008391	lsm4	97	69.784	ENSMOCG00000020861	Lsm4	99	77.305	Microtus_ochrogaster
ENSORLG00000008391	lsm4	51	98.630	ENSMODG00000015044	-	100	77.419	Monodelphis_domestica
ENSORLG00000008391	lsm4	100	93.750	ENSMALG00000018159	lsm4	100	93.750	Monopterus_albus
ENSORLG00000008391	lsm4	97	69.784	MGP_CAROLIEiJ_G0031158	Lsm4	99	77.305	Mus_caroli
ENSORLG00000008391	lsm4	97	69.784	ENSMUSG00000031848	Lsm4	96	86.869	Mus_musculus
ENSORLG00000008391	lsm4	97	69.784	MGP_PahariEiJ_G0021623	Lsm4	99	77.305	Mus_pahari
ENSORLG00000008391	lsm4	97	69.784	MGP_SPRETEiJ_G0032276	Lsm4	99	77.305	Mus_spretus
ENSORLG00000008391	lsm4	61	97.727	ENSMPUG00000015589	LSM4	99	85.106	Mustela_putorius_furo
ENSORLG00000008391	lsm4	60	97.701	ENSMLUG00000004010	LSM4	98	85.000	Myotis_lucifugus
ENSORLG00000008391	lsm4	61	94.318	ENSNGAG00000008644	Lsm4	98	81.481	Nannospalax_galili
ENSORLG00000008391	lsm4	75	97.222	ENSNBRG00000022150	lsm4	67	97.222	Neolamprologus_brichardi
ENSORLG00000008391	lsm4	51	94.521	ENSMEUG00000013229	LSM4	100	72.800	Notamacropus_eugenii
ENSORLG00000008391	lsm4	86	76.613	ENSOPRG00000005575	LSM4	98	78.400	Ochotona_princeps
ENSORLG00000008391	lsm4	97	74.820	ENSODEG00000020549	-	99	83.688	Octodon_degus
ENSORLG00000008391	lsm4	97	69.784	ENSODEG00000004519	-	99	71.831	Octodon_degus
ENSORLG00000008391	lsm4	97	62.411	ENSODEG00000011712	-	98	62.411	Octodon_degus
ENSORLG00000008391	lsm4	100	91.837	ENSONIG00000012724	lsm4	100	91.837	Oreochromis_niloticus
ENSORLG00000008391	lsm4	60	93.407	ENSOANG00000007434	LSM4	97	79.528	Ornithorhynchus_anatinus
ENSORLG00000008391	lsm4	100	99.306	ENSORLG00020014829	lsm4	100	99.306	Oryzias_latipes_hni
ENSORLG00000008391	lsm4	100	98.611	ENSORLG00015010205	lsm4	100	98.611	Oryzias_latipes_hsok
ENSORLG00000008391	lsm4	100	95.833	ENSOMEG00000003606	lsm4	100	95.833	Oryzias_melastigma
ENSORLG00000008391	lsm4	68	94.898	ENSOGAG00000027992	LSM4	75	82.114	Otolemur_garnettii
ENSORLG00000008391	lsm4	60	97.701	ENSOARG00000012553	LSM4	96	82.787	Ovis_aries
ENSORLG00000008391	lsm4	61	97.727	ENSPPAG00000044045	-	99	85.106	Pan_paniscus
ENSORLG00000008391	lsm4	61	97.727	ENSPPRG00000018264	LSM4	99	85.106	Panthera_pardus
ENSORLG00000008391	lsm4	60	97.701	ENSPTIG00000006306	LSM4	99	85.000	Panthera_tigris_altaica
ENSORLG00000008391	lsm4	61	97.727	ENSPTRG00000031470	LSM4	99	85.106	Pan_troglodytes
ENSORLG00000008391	lsm4	61	97.727	ENSPANG00000014399	LSM4	99	85.106	Papio_anubis
ENSORLG00000008391	lsm4	100	87.586	ENSPKIG00000006154	lsm4	100	87.586	Paramormyrops_kingsleyae
ENSORLG00000008391	lsm4	94	82.482	ENSPSIG00000012358	LSM4	100	85.401	Pelodiscus_sinensis
ENSORLG00000008391	lsm4	97	69.784	ENSPEMG00000001358	Lsm4	99	77.305	Peromyscus_maniculatus_bairdii
ENSORLG00000008391	lsm4	100	93.750	ENSPFOG00000000570	lsm4	76	93.750	Poecilia_formosa
ENSORLG00000008391	lsm4	100	93.056	ENSPLAG00000016267	lsm4	100	93.056	Poecilia_latipinna
ENSORLG00000008391	lsm4	100	93.750	ENSPMEG00000016378	lsm4	100	93.750	Poecilia_mexicana
ENSORLG00000008391	lsm4	100	93.750	ENSPREG00000011290	lsm4	76	93.750	Poecilia_reticulata
ENSORLG00000008391	lsm4	61	97.727	ENSPPYG00000009736	LSM4	99	85.106	Pongo_abelii
ENSORLG00000008391	lsm4	51	98.630	ENSPCAG00000008513	LSM4	100	83.065	Procavia_capensis
ENSORLG00000008391	lsm4	69	94.949	ENSPCOG00000019837	LSM4	99	84.397	Propithecus_coquereli
ENSORLG00000008391	lsm4	61	97.727	ENSPVAG00000015383	LSM4	99	85.106	Pteropus_vampyrus
ENSORLG00000008391	lsm4	100	92.466	ENSPNYG00000016794	lsm4	100	92.466	Pundamilia_nyererei
ENSORLG00000008391	lsm4	95	89.051	ENSPNAG00000016598	lsm4	100	89.051	Pygocentrus_nattereri
ENSORLG00000008391	lsm4	97	69.784	ENSRNOG00000019572	Lsm4	99	77.305	Rattus_norvegicus
ENSORLG00000008391	lsm4	61	97.727	ENSRBIG00000024717	LSM4	99	85.106	Rhinopithecus_bieti
ENSORLG00000008391	lsm4	61	97.727	ENSRROG00000045706	LSM4	99	85.106	Rhinopithecus_roxellana
ENSORLG00000008391	lsm4	58	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSORLG00000008391	lsm4	51	97.297	ENSSBOG00000022455	LSM4	98	82.677	Saimiri_boliviensis_boliviensis
ENSORLG00000008391	lsm4	61	98.864	ENSSHAG00000011559	LSM4	100	85.612	Sarcophilus_harrisii
ENSORLG00000008391	lsm4	100	88.276	ENSSFOG00015021067	lsm4	100	88.276	Scleropages_formosus
ENSORLG00000008391	lsm4	100	78.000	ENSSMAG00000021020	lsm4	100	89.333	Scophthalmus_maximus
ENSORLG00000008391	lsm4	100	81.437	ENSSDUG00000009588	lsm4	100	81.437	Seriola_dumerili
ENSORLG00000008391	lsm4	100	80.952	ENSSLDG00000006827	lsm4	100	80.952	Seriola_lalandi_dorsalis
ENSORLG00000008391	lsm4	60	98.851	ENSSPUG00000010166	LSM4	70	82.927	Sphenodon_punctatus
ENSORLG00000008391	lsm4	100	90.066	ENSSPAG00000011615	lsm4	100	90.066	Stegastes_partitus
ENSORLG00000008391	lsm4	61	97.727	ENSSSCG00000034314	LSM4	99	85.106	Sus_scrofa
ENSORLG00000008391	lsm4	100	92.361	ENSTRUG00000021737	lsm4	100	92.361	Takifugu_rubripes
ENSORLG00000008391	lsm4	100	87.586	ENSTNIG00000010191	lsm4	100	87.586	Tetraodon_nigroviridis
ENSORLG00000008391	lsm4	61	97.727	ENSUAMG00000000665	LSM4	98	85.000	Ursus_americanus
ENSORLG00000008391	lsm4	61	97.727	ENSUMAG00000009013	LSM4	99	85.106	Ursus_maritimus
ENSORLG00000008391	lsm4	60	97.701	ENSVVUG00000008136	LSM4	70	85.000	Vulpes_vulpes
ENSORLG00000008391	lsm4	68	95.918	ENSXETG00000024933	lsm4	99	86.429	Xenopus_tropicalis
ENSORLG00000008391	lsm4	100	93.056	ENSXMAG00000026672	lsm4	76	93.056	Xiphophorus_maculatus