EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000008453 (Gene tree)
Gene ID: 101168695
Gene Symbol: upf1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 11523 bases
Position: chr4:13849660-13861182
Accession: 101168695
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000010622	UPF1_Zn_bind	PF09416.10	1.8e-74	1	1
ENSORLP00000010622	ResIII	PF04851.15	3.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000010623	-	3546	XM_023954254	ENSORLP00000010622	1101 (aa)	XP_023810022	H2LWX5

Gene Model

Click here to download ENSORLG00000008453's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03013	RNA transport	KEGG
ola03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000008453's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000008453	upf1	100	92.417	ENSG00000005007	UPF1	100	92.417	Homo_sapiens
ENSORLG00000008453	upf1	100	97.911	ENSAPOG00000010916	-	100	97.911	Acanthochromis_polyacanthus
ENSORLG00000008453	upf1	100	92.405	ENSAPOG00000023773	upf1	100	92.832	Acanthochromis_polyacanthus
ENSORLG00000008453	upf1	100	91.925	ENSAMEG00000011474	UPF1	100	91.925	Ailuropoda_melanoleuca
ENSORLG00000008453	upf1	100	92.747	ENSACIG00000019949	upf1	100	92.941	Amphilophus_citrinellus
ENSORLG00000008453	upf1	93	97.176	ENSACIG00000010985	-	100	97.176	Amphilophus_citrinellus
ENSORLG00000008453	upf1	100	97.911	ENSAOCG00000006352	-	100	97.911	Amphiprion_ocellaris
ENSORLG00000008453	upf1	100	91.916	ENSAOCG00000018519	upf1	100	92.832	Amphiprion_ocellaris
ENSORLG00000008453	upf1	100	97.820	ENSAPEG00000006292	-	100	97.820	Amphiprion_percula
ENSORLG00000008453	upf1	100	91.916	ENSAPEG00000016344	upf1	100	92.832	Amphiprion_percula
ENSORLG00000008453	upf1	100	90.836	ENSATEG00000017867	upf1	100	92.232	Anabas_testudineus
ENSORLG00000008453	upf1	100	97.820	ENSATEG00000016606	-	100	97.820	Anabas_testudineus
ENSORLG00000008453	upf1	95	93.655	ENSAPLG00000009175	UPF1	100	93.655	Anas_platyrhynchos
ENSORLG00000008453	upf1	95	92.213	ENSANAG00000024107	UPF1	95	92.213	Aotus_nancymaae
ENSORLG00000008453	upf1	100	97.368	ENSACLG00000022630	-	100	97.368	Astatotilapia_calliptera
ENSORLG00000008453	upf1	100	92.566	ENSACLG00000007181	upf1	100	92.760	Astatotilapia_calliptera
ENSORLG00000008453	upf1	100	94.560	ENSAMXG00000042187	upf1	100	94.742	Astyanax_mexicanus
ENSORLG00000008453	upf1	100	91.940	ENSBTAG00000020922	UPF1	100	91.940	Bos_taurus
ENSORLG00000008453	upf1	81	55.138	WBGene00004880	smg-2	99	49.908	Caenorhabditis_elegans
ENSORLG00000008453	upf1	100	91.519	ENSCJAG00000019627	UPF1	100	91.519	Callithrix_jacchus
ENSORLG00000008453	upf1	100	91.696	ENSCAFG00000014578	UPF1	100	91.696	Canis_familiaris
ENSORLG00000008453	upf1	100	92.596	ENSCAFG00020012347	UPF1	100	92.596	Canis_lupus_dingo
ENSORLG00000008453	upf1	100	92.844	ENSCHIG00000011018	UPF1	100	92.844	Capra_hircus
ENSORLG00000008453	upf1	95	93.352	ENSTSYG00000008877	UPF1	98	93.352	Carlito_syrichta
ENSORLG00000008453	upf1	95	93.162	ENSCAPG00000005758	UPF1	95	93.162	Cavia_aperea
ENSORLG00000008453	upf1	100	92.543	ENSCPOG00000025463	UPF1	100	92.543	Cavia_porcellus
ENSORLG00000008453	upf1	100	92.417	ENSCCAG00000032175	UPF1	100	92.417	Cebus_capucinus
ENSORLG00000008453	upf1	94	93.798	ENSCATG00000040306	UPF1	97	93.798	Cercocebus_atys
ENSORLG00000008453	upf1	95	93.542	ENSCLAG00000004037	UPF1	99	93.542	Chinchilla_lanigera
ENSORLG00000008453	upf1	100	92.417	ENSCSAG00000005276	UPF1	100	92.417	Chlorocebus_sabaeus
ENSORLG00000008453	upf1	100	92.466	ENSCPBG00000012513	UPF1	100	92.652	Chrysemys_picta_bellii
ENSORLG00000008453	upf1	77	79.157	ENSCING00000021399	-	99	79.089	Ciona_intestinalis
ENSORLG00000008453	upf1	99	72.287	ENSCSAVG00000006533	-	99	72.556	Ciona_savignyi
ENSORLG00000008453	upf1	95	93.542	ENSCANG00000029819	UPF1	97	93.542	Colobus_angolensis_palliatus
ENSORLG00000008453	upf1	100	92.384	ENSCGRG00001021067	Upf1	100	92.384	Cricetulus_griseus_chok1gshd
ENSORLG00000008453	upf1	95	93.067	ENSCGRG00000013480	Upf1	98	93.067	Cricetulus_griseus_crigri
ENSORLG00000008453	upf1	100	97.003	ENSCSEG00000016159	-	100	97.003	Cynoglossus_semilaevis
ENSORLG00000008453	upf1	100	87.307	ENSCSEG00000017239	upf1	100	87.579	Cynoglossus_semilaevis
ENSORLG00000008453	upf1	100	97.366	ENSCVAG00000010561	upf1	100	97.366	Cyprinodon_variegatus
ENSORLG00000008453	upf1	100	94.107	ENSDARG00000016302	upf1	100	94.379	Danio_rerio
ENSORLG00000008453	upf1	95	90.883	ENSDORG00000009984	Upf1	95	90.883	Dipodomys_ordii
ENSORLG00000008453	upf1	86	71.399	FBgn0030354	Upf1	81	70.954	Drosophila_melanogaster
ENSORLG00000008453	upf1	54	86.491	ENSEBUG00000010069	upf1	96	87.107	Eptatretus_burgeri
ENSORLG00000008453	upf1	100	92.755	ENSEASG00005006549	UPF1	100	92.755	Equus_asinus_asinus
ENSORLG00000008453	upf1	100	92.755	ENSECAG00000010639	UPF1	100	92.755	Equus_caballus
ENSORLG00000008453	upf1	100	91.697	ENSELUG00000020917	upf1	100	92.329	Esox_lucius
ENSORLG00000008453	upf1	100	94.500	ENSELUG00000012916	-	100	94.500	Esox_lucius
ENSORLG00000008453	upf1	100	91.608	ENSFCAG00000009757	UPF1	100	91.608	Felis_catus
ENSORLG00000008453	upf1	95	94.185	ENSFALG00000009312	UPF1	96	94.185	Ficedula_albicollis
ENSORLG00000008453	upf1	95	93.447	ENSFDAG00000014816	UPF1	99	93.447	Fukomys_damarensis
ENSORLG00000008453	upf1	86	97.822	ENSFHEG00000016276	-	96	97.822	Fundulus_heteroclitus
ENSORLG00000008453	upf1	100	89.257	ENSFHEG00000006428	upf1	100	89.257	Fundulus_heteroclitus
ENSORLG00000008453	upf1	100	93.801	ENSGMOG00000007541	upf1	100	94.070	Gadus_morhua
ENSORLG00000008453	upf1	100	92.404	ENSGALG00000003220	UPF1	100	92.672	Gallus_gallus
ENSORLG00000008453	upf1	100	97.366	ENSGAFG00000004831	upf1	100	97.366	Gambusia_affinis
ENSORLG00000008453	upf1	64	92.697	ENSGAFG00000015443	-	88	92.190	Gambusia_affinis
ENSORLG00000008453	upf1	100	92.883	ENSGAGG00000022217	UPF1	100	93.159	Gopherus_agassizii
ENSORLG00000008453	upf1	95	94.530	ENSGGOG00000002608	UPF1	99	94.530	Gorilla_gorilla
ENSORLG00000008453	upf1	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSORLG00000008453	upf1	90	85.057	ENSHBUG00000014694	upf1	100	85.057	Haplochromis_burtoni
ENSORLG00000008453	upf1	100	91.254	ENSHGLG00000010900	UPF1	100	91.254	Heterocephalus_glaber_female
ENSORLG00000008453	upf1	95	91.738	ENSHGLG00100005904	UPF1	96	91.738	Heterocephalus_glaber_male
ENSORLG00000008453	upf1	100	96.915	ENSHCOG00000008918	upf1	100	96.915	Hippocampus_comes
ENSORLG00000008453	upf1	100	94.651	ENSIPUG00000005108	UPF1	100	94.832	Ictalurus_punctatus
ENSORLG00000008453	upf1	100	92.417	ENSSTOG00000009196	UPF1	100	92.417	Ictidomys_tridecemlineatus
ENSORLG00000008453	upf1	100	91.200	ENSJJAG00000023151	Upf1	100	91.289	Jaculus_jaculus
ENSORLG00000008453	upf1	100	97.820	ENSKMAG00000004962	upf1	100	97.820	Kryptolebias_marmoratus
ENSORLG00000008453	upf1	100	97.641	ENSLBEG00000027848	-	100	97.641	Labrus_bergylta
ENSORLG00000008453	upf1	100	90.860	ENSLBEG00000014862	upf1	100	92.025	Labrus_bergylta
ENSORLG00000008453	upf1	63	94.986	ENSLACG00000008482	UPF1	100	94.986	Latimeria_chalumnae
ENSORLG00000008453	upf1	100	95.550	ENSLOCG00000002072	upf1	100	95.550	Lepisosteus_oculatus
ENSORLG00000008453	upf1	100	91.239	ENSLAFG00000014963	UPF1	100	91.239	Loxodonta_africana
ENSORLG00000008453	upf1	100	92.171	ENSMFAG00000037748	UPF1	100	92.171	Macaca_fascicularis
ENSORLG00000008453	upf1	100	91.925	ENSMMUG00000023286	UPF1	100	91.925	Macaca_mulatta
ENSORLG00000008453	upf1	100	92.171	ENSMNEG00000000046	UPF1	100	92.171	Macaca_nemestrina
ENSORLG00000008453	upf1	95	93.542	ENSMLEG00000028404	UPF1	99	93.542	Mandrillus_leucophaeus
ENSORLG00000008453	upf1	100	91.503	ENSMAMG00000006229	upf1	100	92.576	Mastacembelus_armatus
ENSORLG00000008453	upf1	100	97.731	ENSMAMG00000006231	-	100	97.731	Mastacembelus_armatus
ENSORLG00000008453	upf1	100	97.368	ENSMZEG00005016386	-	100	97.368	Maylandia_zebra
ENSORLG00000008453	upf1	100	91.734	ENSMZEG00005003489	upf1	100	92.543	Maylandia_zebra
ENSORLG00000008453	upf1	95	93.169	ENSMGAG00000004745	UPF1	100	93.169	Meleagris_gallopavo
ENSORLG00000008453	upf1	95	93.067	ENSMAUG00000011398	Upf1	95	93.067	Mesocricetus_auratus
ENSORLG00000008453	upf1	100	92.328	ENSMICG00000001659	UPF1	100	92.328	Microcebus_murinus
ENSORLG00000008453	upf1	100	91.482	ENSMOCG00000005699	Upf1	100	91.571	Microtus_ochrogaster
ENSORLG00000008453	upf1	100	91.553	ENSMMOG00000007881	upf1	100	92.105	Mola_mola
ENSORLG00000008453	upf1	95	95.502	ENSMMOG00000007537	-	99	95.502	Mola_mola
ENSORLG00000008453	upf1	100	91.189	ENSMODG00000003689	UPF1	100	91.278	Monodelphis_domestica
ENSORLG00000008453	upf1	100	96.199	ENSMALG00000018100	-	100	96.199	Monopterus_albus
ENSORLG00000008453	upf1	100	91.553	ENSMALG00000000144	upf1	100	92.007	Monopterus_albus
ENSORLG00000008453	upf1	100	92.294	MGP_CAROLIEiJ_G0031142	Upf1	100	92.294	Mus_caroli
ENSORLG00000008453	upf1	100	92.294	ENSMUSG00000058301	Upf1	100	92.294	Mus_musculus
ENSORLG00000008453	upf1	100	92.294	MGP_PahariEiJ_G0021607	Upf1	100	92.294	Mus_pahari
ENSORLG00000008453	upf1	100	92.294	MGP_SPRETEiJ_G0032260	Upf1	100	92.294	Mus_spretus
ENSORLG00000008453	upf1	100	92.596	ENSMPUG00000015516	UPF1	100	92.596	Mustela_putorius_furo
ENSORLG00000008453	upf1	99	92.390	ENSMLUG00000012122	UPF1	99	92.390	Myotis_lucifugus
ENSORLG00000008453	upf1	100	90.973	ENSNGAG00000024107	Upf1	100	90.973	Nannospalax_galili
ENSORLG00000008453	upf1	100	90.934	ENSNBRG00000000670	upf1	100	91.131	Neolamprologus_brichardi
ENSORLG00000008453	upf1	100	93.788	ENSNBRG00000022069	-	100	96.505	Neolamprologus_brichardi
ENSORLG00000008453	upf1	95	87.749	ENSNLEG00000006062	UPF1	99	87.749	Nomascus_leucogenys
ENSORLG00000008453	upf1	83	88.867	ENSMEUG00000014146	-	83	88.867	Notamacropus_eugenii
ENSORLG00000008453	upf1	95	87.236	ENSOPRG00000014018	UPF1	99	87.236	Ochotona_princeps
ENSORLG00000008453	upf1	100	92.626	ENSODEG00000012426	UPF1	100	92.626	Octodon_degus
ENSORLG00000008453	upf1	100	91.914	ENSONIG00000010452	upf1	100	92.722	Oreochromis_niloticus
ENSORLG00000008453	upf1	100	97.278	ENSONIG00000012729	-	100	97.278	Oreochromis_niloticus
ENSORLG00000008453	upf1	100	91.770	ENSOANG00000004568	UPF1	100	91.770	Ornithorhynchus_anatinus
ENSORLG00000008453	upf1	100	99.909	ENSORLG00020014758	upf1	100	99.909	Oryzias_latipes_hni
ENSORLG00000008453	upf1	100	99.909	ENSORLG00015010165	upf1	100	99.909	Oryzias_latipes_hsok
ENSORLG00000008453	upf1	100	99.364	ENSOMEG00000003665	upf1	100	99.364	Oryzias_melastigma
ENSORLG00000008453	upf1	100	92.507	ENSOGAG00000012866	UPF1	100	92.507	Otolemur_garnettii
ENSORLG00000008453	upf1	96	90.809	ENSOARG00000010739	UPF1	100	90.809	Ovis_aries
ENSORLG00000008453	upf1	95	93.542	ENSPPAG00000043884	UPF1	96	93.542	Pan_paniscus
ENSORLG00000008453	upf1	100	91.608	ENSPPRG00000023470	UPF1	100	91.608	Panthera_pardus
ENSORLG00000008453	upf1	95	92.529	ENSPTIG00000010159	UPF1	99	92.529	Panthera_tigris_altaica
ENSORLG00000008453	upf1	100	92.171	ENSPTRG00000010721	UPF1	100	92.171	Pan_troglodytes
ENSORLG00000008453	upf1	100	92.171	ENSPANG00000008847	UPF1	100	92.171	Papio_anubis
ENSORLG00000008453	upf1	93	93.756	ENSPKIG00000006069	upf1	98	93.756	Paramormyrops_kingsleyae
ENSORLG00000008453	upf1	70	93.611	ENSPSIG00000009491	UPF1	100	93.611	Pelodiscus_sinensis
ENSORLG00000008453	upf1	100	90.769	ENSPMGG00000017327	upf1	100	90.975	Periophthalmus_magnuspinnatus
ENSORLG00000008453	upf1	100	91.482	ENSPEMG00000001085	Upf1	100	91.482	Peromyscus_maniculatus_bairdii
ENSORLG00000008453	upf1	100	87.117	ENSPMAG00000001206	upf1	100	87.117	Petromyzon_marinus
ENSORLG00000008453	upf1	100	92.589	ENSPCIG00000006156	UPF1	100	92.589	Phascolarctos_cinereus
ENSORLG00000008453	upf1	100	90.656	ENSPLAG00000018155	-	100	90.656	Poecilia_latipinna
ENSORLG00000008453	upf1	100	97.457	ENSPLAG00000016232	-	100	97.457	Poecilia_latipinna
ENSORLG00000008453	upf1	100	97.368	ENSPMEG00000016319	-	100	97.368	Poecilia_mexicana
ENSORLG00000008453	upf1	100	91.222	ENSPMEG00000011443	-	100	91.222	Poecilia_mexicana
ENSORLG00000008453	upf1	100	97.366	ENSPREG00000011247	-	100	97.366	Poecilia_reticulata
ENSORLG00000008453	upf1	100	91.031	ENSPREG00000009940	upf1	100	91.031	Poecilia_reticulata
ENSORLG00000008453	upf1	100	86.749	ENSPPYG00000009752	UPF1	100	86.749	Pongo_abelii
ENSORLG00000008453	upf1	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSORLG00000008453	upf1	100	92.007	ENSPCOG00000023813	UPF1	100	92.096	Propithecus_coquereli
ENSORLG00000008453	upf1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSORLG00000008453	upf1	100	91.734	ENSPNYG00000003694	upf1	100	92.543	Pundamilia_nyererei
ENSORLG00000008453	upf1	100	97.368	ENSPNYG00000016731	-	100	97.368	Pundamilia_nyererei
ENSORLG00000008453	upf1	100	94.288	ENSPNAG00000025614	upf1	100	94.470	Pygocentrus_nattereri
ENSORLG00000008453	upf1	100	92.294	ENSRNOG00000020134	Upf1	100	92.294	Rattus_norvegicus
ENSORLG00000008453	upf1	95	91.168	ENSRBIG00000013894	UPF1	98	94.754	Rhinopithecus_bieti
ENSORLG00000008453	upf1	95	93.542	ENSRROG00000040935	UPF1	98	94.754	Rhinopithecus_roxellana
ENSORLG00000008453	upf1	74	56.793	YMR080C	NAM7	84	56.793	Saccharomyces_cerevisiae
ENSORLG00000008453	upf1	94	93.798	ENSSBOG00000023632	UPF1	96	93.798	Saimiri_boliviensis_boliviensis
ENSORLG00000008453	upf1	95	93.365	ENSSHAG00000010499	UPF1	100	93.365	Sarcophilus_harrisii
ENSORLG00000008453	upf1	100	95.554	ENSSFOG00015021095	upf1	100	95.554	Scleropages_formosus
ENSORLG00000008453	upf1	100	90.698	ENSSMAG00000005055	upf1	100	91.846	Scophthalmus_maximus
ENSORLG00000008453	upf1	100	97.913	ENSSMAG00000021018	-	100	97.913	Scophthalmus_maximus
ENSORLG00000008453	upf1	100	91.145	ENSSDUG00000013320	upf1	100	92.487	Seriola_dumerili
ENSORLG00000008453	upf1	100	98.004	ENSSDUG00000009629	-	100	98.004	Seriola_dumerili
ENSORLG00000008453	upf1	100	91.968	ENSSLDG00000020868	upf1	100	92.703	Seriola_lalandi_dorsalis
ENSORLG00000008453	upf1	100	98.004	ENSSLDG00000006878	-	100	98.004	Seriola_lalandi_dorsalis
ENSORLG00000008453	upf1	100	92.806	ENSSPUG00000010538	UPF1	100	93.255	Sphenodon_punctatus
ENSORLG00000008453	upf1	100	90.489	ENSSPAG00000000003	upf1	100	90.670	Stegastes_partitus
ENSORLG00000008453	upf1	100	97.911	ENSSPAG00000011521	-	100	97.911	Stegastes_partitus
ENSORLG00000008453	upf1	100	92.755	ENSSSCG00000039301	UPF1	99	94.540	Sus_scrofa
ENSORLG00000008453	upf1	82	86.489	ENSTGUG00000001057	UPF1	100	91.272	Taeniopygia_guttata
ENSORLG00000008453	upf1	100	91.742	ENSTRUG00000000150	upf1	100	91.924	Takifugu_rubripes
ENSORLG00000008453	upf1	100	96.276	ENSTRUG00000005131	-	100	96.276	Takifugu_rubripes
ENSORLG00000008453	upf1	100	88.998	ENSTTRG00000011544	UPF1	100	88.998	Tursiops_truncatus
ENSORLG00000008453	upf1	100	92.507	ENSUAMG00000007093	UPF1	100	92.507	Ursus_americanus
ENSORLG00000008453	upf1	95	94.540	ENSUMAG00000006652	UPF1	99	95.238	Ursus_maritimus
ENSORLG00000008453	upf1	100	92.596	ENSVVUG00000007797	UPF1	100	92.596	Vulpes_vulpes
ENSORLG00000008453	upf1	100	79.559	ENSXETG00000013602	upf1	100	79.559	Xenopus_tropicalis
ENSORLG00000008453	upf1	97	90.977	ENSXCOG00000015275	-	96	90.977	Xiphophorus_couchianus
ENSORLG00000008453	upf1	94	97.578	ENSXCOG00000005764	-	100	97.578	Xiphophorus_couchianus
ENSORLG00000008453	upf1	100	97.187	ENSXMAG00000002540	-	100	97.187	Xiphophorus_maculatus
ENSORLG00000008453	upf1	100	91.190	ENSXMAG00000001703	-	100	91.190	Xiphophorus_maculatus