EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000008918 (Gene tree)
Gene ID: 101169636
Gene Symbol: rad54b
Alias: -
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 12047 bases
Position: chr16:17744880-17756926
Accession: 101169636
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000011190	ResIII	PF04851.15	6.3e-10	1	1
ENSORLP00000034604	ResIII	PF04851.15	4.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000011191	-	3145	XM_011485236	ENSORLP00000011190	935 (aa)	XP_011483538	H2LYH4
ENSORLT00000035480	-	1932	-	ENSORLP00000034604	643 (aa)	-	-

Gene Model

Click here to download ENSORLG00000008918's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000008918's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000008918	rad54b	98	45.511	ENSORLG00000002958	rad54l	89	43.678
ENSORLG00000008918	rad54b	84	30.348	ENSORLG00000004287	ercc6l2	56	30.348
ENSORLG00000008918	rad54b	81	31.734	ENSORLG00000024240	ercc6l	74	32.657
ENSORLG00000008918	rad54b	50	32.773	ENSORLG00000000987	hells	57	32.773
ENSORLG00000008918	rad54b	85	30.634	ENSORLG00000003673	chd1l	57	30.634

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000008918	rad54b	99	61.824	ENSG00000265817	FSBP	99	59.537	Homo_sapiens
ENSORLG00000008918	rad54b	99	61.824	ENSG00000197275	RAD54B	99	54.286	Homo_sapiens
ENSORLG00000008918	rad54b	99	62.906	ENSAMEG00000005834	-	99	55.132	Ailuropoda_melanoleuca
ENSORLG00000008918	rad54b	100	87.092	ENSACIG00000013005	rad54b	95	84.615	Amphilophus_citrinellus
ENSORLG00000008918	rad54b	100	85.294	ENSAOCG00000008523	rad54b	100	79.193	Amphiprion_ocellaris
ENSORLG00000008918	rad54b	100	85.248	ENSAPEG00000001673	rad54b	100	73.489	Amphiprion_percula
ENSORLG00000008918	rad54b	100	85.581	ENSATEG00000001527	rad54b	100	77.754	Anabas_testudineus
ENSORLG00000008918	rad54b	99	64.596	ENSAPLG00000014366	-	99	56.554	Anas_platyrhynchos
ENSORLG00000008918	rad54b	99	61.669	ENSACAG00000003671	-	98	60.914	Anolis_carolinensis
ENSORLG00000008918	rad54b	99	61.360	ENSANAG00000019528	-	99	61.385	Aotus_nancymaae
ENSORLG00000008918	rad54b	100	87.597	ENSACLG00000007826	rad54b	99	85.786	Astatotilapia_calliptera
ENSORLG00000008918	rad54b	99	69.579	ENSAMXG00000039985	rad54b	94	67.762	Astyanax_mexicanus
ENSORLG00000008918	rad54b	99	62.751	ENSBTAG00000000632	RAD54B	99	54.822	Bos_taurus
ENSORLG00000008918	rad54b	84	39.162	WBGene00013792	Y116A8C.13	85	35.395	Caenorhabditis_elegans
ENSORLG00000008918	rad54b	99	62.287	ENSCJAG00000000080	-	99	59.754	Callithrix_jacchus
ENSORLG00000008918	rad54b	99	63.369	ENSCAFG00000009179	RAD54B	99	55.591	Canis_familiaris
ENSORLG00000008918	rad54b	99	63.369	ENSCAFG00020012084	-	99	55.591	Canis_lupus_dingo
ENSORLG00000008918	rad54b	99	62.751	ENSCHIG00000008230	-	99	54.747	Capra_hircus
ENSORLG00000008918	rad54b	99	62.133	ENSTSYG00000013234	-	99	55.085	Carlito_syrichta
ENSORLG00000008918	rad54b	99	62.404	ENSCPOG00000011643	-	99	55.000	Cavia_porcellus
ENSORLG00000008918	rad54b	99	62.287	ENSCCAG00000011754	-	99	59.754	Cebus_capucinus
ENSORLG00000008918	rad54b	99	62.229	ENSCATG00000030661	-	99	59.563	Cercocebus_atys
ENSORLG00000008918	rad54b	99	62.096	ENSCLAG00000010476	-	99	54.420	Chinchilla_lanigera
ENSORLG00000008918	rad54b	99	62.074	ENSCSAG00000012712	-	99	54.526	Chlorocebus_sabaeus
ENSORLG00000008918	rad54b	99	63.833	ENSCPBG00000003204	-	98	58.362	Chrysemys_picta_bellii
ENSORLG00000008918	rad54b	99	62.384	ENSCANG00000017939	-	99	59.189	Colobus_angolensis_palliatus
ENSORLG00000008918	rad54b	99	62.305	ENSCGRG00001020184	Rad54b	89	59.823	Cricetulus_griseus_chok1gshd
ENSORLG00000008918	rad54b	99	60.903	ENSCGRG00000016752	Rad54b	88	58.682	Cricetulus_griseus_crigri
ENSORLG00000008918	rad54b	99	82.582	ENSCSEG00000001601	rad54b	99	80.682	Cynoglossus_semilaevis
ENSORLG00000008918	rad54b	100	84.341	ENSCVAG00000009200	rad54b	100	75.932	Cyprinodon_variegatus
ENSORLG00000008918	rad54b	99	69.051	ENSDARG00000092134	rad54b	99	69.267	Danio_rerio
ENSORLG00000008918	rad54b	99	62.656	ENSDNOG00000015535	-	99	55.532	Dasypus_novemcinctus
ENSORLG00000008918	rad54b	99	62.712	ENSDORG00000002492	Rad54b	99	55.367	Dipodomys_ordii
ENSORLG00000008918	rad54b	81	66.603	ENSETEG00000010605	-	100	57.683	Echinops_telfairi
ENSORLG00000008918	rad54b	99	51.677	ENSEBUG00000009104	rad54b	98	46.436	Eptatretus_burgeri
ENSORLG00000008918	rad54b	99	61.978	ENSEASG00005004021	-	89	60.553	Equus_asinus_asinus
ENSORLG00000008918	rad54b	99	62.442	ENSECAG00000021949	-	99	55.048	Equus_caballus
ENSORLG00000008918	rad54b	86	54.268	ENSEEUG00000008056	-	72	53.704	Erinaceus_europaeus
ENSORLG00000008918	rad54b	100	78.295	ENSELUG00000009287	rad54b	100	70.632	Esox_lucius
ENSORLG00000008918	rad54b	99	63.020	ENSFCAG00000015513	-	99	61.088	Felis_catus
ENSORLG00000008918	rad54b	99	64.441	ENSFALG00000005467	-	99	56.614	Ficedula_albicollis
ENSORLG00000008918	rad54b	99	61.941	ENSFDAG00000020541	-	99	55.080	Fukomys_damarensis
ENSORLG00000008918	rad54b	100	80.556	ENSFHEG00000014382	rad54b	90	78.005	Fundulus_heteroclitus
ENSORLG00000008918	rad54b	100	81.356	ENSGMOG00000014774	rad54b	99	79.167	Gadus_morhua
ENSORLG00000008918	rad54b	99	64.743	ENSGALG00000043597	RAD54B	99	56.397	Gallus_gallus
ENSORLG00000008918	rad54b	99	85.514	ENSGAFG00000007901	rad54b	98	82.397	Gambusia_affinis
ENSORLG00000008918	rad54b	99	84.448	ENSGACG00000009128	rad54b	99	75.214	Gasterosteus_aculeatus
ENSORLG00000008918	rad54b	99	64.019	ENSGAGG00000018747	-	99	57.006	Gopherus_agassizii
ENSORLG00000008918	rad54b	99	61.824	ENSGGOG00000023516	-	99	54.574	Gorilla_gorilla
ENSORLG00000008918	rad54b	100	87.597	ENSHBUG00000016017	rad54b	99	80.724	Haplochromis_burtoni
ENSORLG00000008918	rad54b	99	61.256	ENSHGLG00000008263	RAD54B	99	54.382	Heterocephalus_glaber_female
ENSORLG00000008918	rad54b	99	60.243	ENSHGLG00100008108	-	99	53.725	Heterocephalus_glaber_male
ENSORLG00000008918	rad54b	99	79.471	ENSHCOG00000004764	rad54b	98	73.886	Hippocampus_comes
ENSORLG00000008918	rad54b	99	69.290	ENSIPUG00000018531	rad54b	99	60.852	Ictalurus_punctatus
ENSORLG00000008918	rad54b	99	61.778	ENSSTOG00000010791	-	99	53.871	Ictidomys_tridecemlineatus
ENSORLG00000008918	rad54b	99	62.191	ENSJJAG00000010314	Rad54b	99	54.420	Jaculus_jaculus
ENSORLG00000008918	rad54b	100	82.636	ENSKMAG00000004744	rad54b	91	81.298	Kryptolebias_marmoratus
ENSORLG00000008918	rad54b	99	67.081	ENSLACG00000000859	-	100	64.021	Latimeria_chalumnae
ENSORLG00000008918	rad54b	99	70.652	ENSLOCG00000010100	rad54b	99	63.358	Lepisosteus_oculatus
ENSORLG00000008918	rad54b	99	62.558	ENSLAFG00000015315	-	97	59.296	Loxodonta_africana
ENSORLG00000008918	rad54b	99	62.229	ENSMFAG00000031629	-	99	59.563	Macaca_fascicularis
ENSORLG00000008918	rad54b	99	62.229	ENSMMUG00000005659	-	99	54.478	Macaca_mulatta
ENSORLG00000008918	rad54b	99	62.229	ENSMNEG00000016408	-	99	54.478	Macaca_nemestrina
ENSORLG00000008918	rad54b	99	62.229	ENSMLEG00000006946	-	99	54.478	Mandrillus_leucophaeus
ENSORLG00000008918	rad54b	100	83.692	ENSMAMG00000012269	rad54b	99	73.757	Mastacembelus_armatus
ENSORLG00000008918	rad54b	100	87.752	ENSMZEG00005005281	rad54b	99	84.121	Maylandia_zebra
ENSORLG00000008918	rad54b	99	64.275	ENSMGAG00000012024	-	99	55.544	Meleagris_gallopavo
ENSORLG00000008918	rad54b	99	61.682	ENSMAUG00000013586	Rad54b	99	53.269	Mesocricetus_auratus
ENSORLG00000008918	rad54b	99	61.515	ENSMICG00000000754	-	93	59.440	Microcebus_murinus
ENSORLG00000008918	rad54b	99	61.395	ENSMOCG00000020035	Rad54b	99	52.681	Microtus_ochrogaster
ENSORLG00000008918	rad54b	99	84.062	ENSMMOG00000003394	rad54b	92	81.058	Mola_mola
ENSORLG00000008918	rad54b	99	62.751	ENSMODG00000007343	-	97	59.601	Monodelphis_domestica
ENSORLG00000008918	rad54b	100	83.359	ENSMALG00000001520	rad54b	100	83.515	Monopterus_albus
ENSORLG00000008918	rad54b	99	62.733	MGP_CAROLIEiJ_G0025810	Rad54b	99	54.380	Mus_caroli
ENSORLG00000008918	rad54b	99	61.646	ENSMUSG00000078773	Rad54b	99	53.526	Mus_musculus
ENSORLG00000008918	rad54b	99	62.267	MGP_PahariEiJ_G0023933	Rad54b	99	53.625	Mus_pahari
ENSORLG00000008918	rad54b	99	62.461	MGP_SPRETEiJ_G0026758	Rad54b	99	53.838	Mus_spretus
ENSORLG00000008918	rad54b	99	62.751	ENSMPUG00000008878	-	97	61.104	Mustela_putorius_furo
ENSORLG00000008918	rad54b	99	62.906	ENSMLUG00000008953	-	99	55.544	Myotis_lucifugus
ENSORLG00000008918	rad54b	99	61.550	ENSNGAG00000017537	Rad54b	99	54.140	Nannospalax_galili
ENSORLG00000008918	rad54b	100	88.062	ENSNBRG00000013394	rad54b	100	85.644	Neolamprologus_brichardi
ENSORLG00000008918	rad54b	99	61.669	ENSNLEG00000003062	-	99	59.673	Nomascus_leucogenys
ENSORLG00000008918	rad54b	76	72.314	ENSMEUG00000012426	-	69	63.333	Notamacropus_eugenii
ENSORLG00000008918	rad54b	99	62.250	ENSODEG00000002650	-	93	77.273	Octodon_degus
ENSORLG00000008918	rad54b	99	62.096	ENSODEG00000019564	-	99	54.633	Octodon_degus
ENSORLG00000008918	rad54b	100	88.527	ENSONIG00000006067	rad54b	100	81.683	Oreochromis_niloticus
ENSORLG00000008918	rad54b	99	63.426	ENSOANG00000011348	-	99	60.444	Ornithorhynchus_anatinus
ENSORLG00000008918	rad54b	99	62.016	ENSOCUG00000016478	-	99	54.904	Oryctolagus_cuniculus
ENSORLG00000008918	rad54b	100	99.533	ENSORLG00020012171	rad54b	100	99.533	Oryzias_latipes_hni
ENSORLG00000008918	rad54b	100	98.186	ENSORLG00015018536	rad54b	100	98.186	Oryzias_latipes_hsok
ENSORLG00000008918	rad54b	100	94.557	ENSOMEG00000004345	rad54b	100	91.462	Oryzias_melastigma
ENSORLG00000008918	rad54b	99	60.686	ENSOGAG00000007854	-	99	53.533	Otolemur_garnettii
ENSORLG00000008918	rad54b	99	62.597	ENSOARG00000007691	-	97	60.546	Ovis_aries
ENSORLG00000008918	rad54b	99	60.278	ENSPPAG00000029572	-	99	53.291	Pan_paniscus
ENSORLG00000008918	rad54b	99	62.906	ENSPPRG00000007571	-	99	60.952	Panthera_pardus
ENSORLG00000008918	rad54b	99	62.906	ENSPTIG00000012670	-	99	60.816	Panthera_tigris_altaica
ENSORLG00000008918	rad54b	99	61.824	ENSPTRG00000020427	-	99	59.673	Pan_troglodytes
ENSORLG00000008918	rad54b	99	62.229	ENSPANG00000019566	-	99	54.478	Papio_anubis
ENSORLG00000008918	rad54b	99	71.517	ENSPKIG00000014974	rad54b	99	63.819	Paramormyrops_kingsleyae
ENSORLG00000008918	rad54b	99	63.833	ENSPSIG00000002383	-	96	61.887	Pelodiscus_sinensis
ENSORLG00000008918	rad54b	99	62.112	ENSPEMG00000012133	Rad54b	99	54.149	Peromyscus_maniculatus_bairdii
ENSORLG00000008918	rad54b	99	59.231	ENSPMAG00000002916	rad54b	98	58.586	Petromyzon_marinus
ENSORLG00000008918	rad54b	99	63.084	ENSPCIG00000020151	-	91	60.303	Phascolarctos_cinereus
ENSORLG00000008918	rad54b	99	85.981	ENSPFOG00000023411	rad54b	99	79.553	Poecilia_formosa
ENSORLG00000008918	rad54b	99	85.514	ENSPLAG00000010430	rad54b	99	79.233	Poecilia_latipinna
ENSORLG00000008918	rad54b	99	85.981	ENSPMEG00000016873	rad54b	99	81.772	Poecilia_mexicana
ENSORLG00000008918	rad54b	99	85.670	ENSPREG00000018443	rad54b	99	79.745	Poecilia_reticulata
ENSORLG00000008918	rad54b	99	61.824	ENSPPYG00000018750	-	99	54.468	Pongo_abelii
ENSORLG00000008918	rad54b	99	61.360	ENSPCOG00000026845	-	99	59.401	Propithecus_coquereli
ENSORLG00000008918	rad54b	99	62.906	ENSPVAG00000000261	-	86	59.577	Pteropus_vampyrus
ENSORLG00000008918	rad54b	100	85.271	ENSPNYG00000018303	rad54b	97	83.458	Pundamilia_nyererei
ENSORLG00000008918	rad54b	99	69.706	ENSPNAG00000000295	rad54b	99	62.062	Pygocentrus_nattereri
ENSORLG00000008918	rad54b	99	61.801	ENSRNOG00000039949	Rad54b	99	54.234	Rattus_norvegicus
ENSORLG00000008918	rad54b	99	61.728	ENSRBIG00000020419	-	99	53.700	Rhinopithecus_bieti
ENSORLG00000008918	rad54b	99	61.765	ENSRROG00000039897	-	99	53.700	Rhinopithecus_roxellana
ENSORLG00000008918	rad54b	86	41.735	YBR073W	RDH54	80	36.465	Saccharomyces_cerevisiae
ENSORLG00000008918	rad54b	99	62.133	ENSSBOG00000028501	-	99	54.334	Saimiri_boliviensis_boliviensis
ENSORLG00000008918	rad54b	99	63.651	ENSSHAG00000017038	-	99	55.449	Sarcophilus_harrisii
ENSORLG00000008918	rad54b	89	71.030	ENSSFOG00015008483	rad54b	89	71.831	Scleropages_formosus
ENSORLG00000008918	rad54b	99	85.381	ENSSMAG00000018659	rad54b	99	80.593	Scophthalmus_maximus
ENSORLG00000008918	rad54b	95	86.364	ENSSDUG00000001122	rad54b	96	79.913	Seriola_dumerili
ENSORLG00000008918	rad54b	100	85.913	ENSSLDG00000013787	rad54b	100	79.704	Seriola_lalandi_dorsalis
ENSORLG00000008918	rad54b	99	63.524	ENSSPUG00000016497	-	99	56.416	Sphenodon_punctatus
ENSORLG00000008918	rad54b	100	85.736	ENSSPAG00000012800	rad54b	100	76.546	Stegastes_partitus
ENSORLG00000008918	rad54b	99	62.133	ENSSSCG00000006101	-	98	61.006	Sus_scrofa
ENSORLG00000008918	rad54b	99	64.861	ENSTGUG00000011880	-	99	56.782	Taeniopygia_guttata
ENSORLG00000008918	rad54b	100	83.256	ENSTRUG00000010015	rad54b	99	75.818	Takifugu_rubripes
ENSORLG00000008918	rad54b	99	57.496	ENSTTRG00000006312	-	99	51.958	Tursiops_truncatus
ENSORLG00000008918	rad54b	99	62.906	ENSUMAG00000016401	-	99	55.026	Ursus_maritimus
ENSORLG00000008918	rad54b	99	62.906	ENSVPAG00000003157	-	99	55.579	Vicugna_pacos
ENSORLG00000008918	rad54b	99	52.851	ENSXETG00000025924	rad54b	98	53.759	Xenopus_tropicalis
ENSORLG00000008918	rad54b	99	84.579	ENSXMAG00000013141	rad54b	99	74.356	Xiphophorus_maculatus