EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000009178 (Gene tree)
Gene ID: 101166148
Gene Symbol: -
Alias: -
Full Name: probable ATP-dependent RNA helicase ddx6
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 8719 bases
Position: chr11:19346170-19354888
Accession: 101166148
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000036942	DEAD	PF00270.29	8e-41	1	1
ENSORLP00000044438	DEAD	PF00270.29	8e-41	1	1
ENSORLP00000011517	DEAD	PF00270.29	9.7e-26	1	2
ENSORLP00000011517	DEAD	PF00270.29	9.7e-26	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000028513	-	7211	XM_004074311	ENSORLP00000036942	486 (aa)	XP_004074359	UPI0002A4979C
ENSORLT00000045064	-	7280	-	ENSORLP00000044438	486 (aa)	-	UPI0002A4979C
ENSORLT00000011518	-	1314	-	ENSORLP00000011517	437 (aa)	-	H2LZE5

Gene Model

Click here to download ENSORLG00000009178's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000009178's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000009178	-	74	30.233	ENSORLG00000029482	ddx55	65	30.233
ENSORLG00000009178	-	68	33.038	ENSORLG00000014497	-	77	31.332
ENSORLG00000009178	-	71	40.678	ENSORLG00000016709	ddx1	57	40.678
ENSORLG00000009178	-	77	37.831	ENSORLG00000018405	eif4a3	92	37.831
ENSORLG00000009178	-	73	30.163	ENSORLG00000006688	DDX41	59	30.163
ENSORLG00000009178	-	75	35.620	ENSORLG00000016216	ddx19	81	34.897
ENSORLG00000009178	-	74	39.344	ENSORLG00000020672	ddx4	64	30.100
ENSORLG00000009178	-	80	33.920	ENSORLG00000008949	ddx20	53	33.920
ENSORLG00000009178	-	76	40.323	ENSORLG00000008838	eif4a2	90	40.323
ENSORLG00000009178	-	71	32.676	ENSORLG00000002267	ddx43	54	32.676
ENSORLG00000009178	-	81	35.589	ENSORLG00000010565	DDX39A	93	35.589
ENSORLG00000009178	-	66	31.003	ENSORLG00000008090	ddx18	51	31.003
ENSORLG00000009178	-	76	39.516	ENSORLG00000010659	eif4a1b	92	39.516
ENSORLG00000009178	-	71	30.618	ENSORLG00000000866	DDX5	56	30.618
ENSORLG00000009178	-	72	40.741	ENSORLG00000025640	-	57	30.383
ENSORLG00000009178	-	74	31.068	ENSORLG00000012330	ddx23	52	31.068
ENSORLG00000009178	-	72	32.778	ENSORLG00000013685	si:dkey-156n14.5	55	32.778
ENSORLG00000009178	-	71	36.620	ENSORLG00000015931	zgc:193690	79	36.620
ENSORLG00000009178	-	99	80.698	ENSORLG00000002506	ddx6	100	81.109
ENSORLG00000009178	-	81	35.338	ENSORLG00000000279	ddx39aa	93	35.338
ENSORLG00000009178	-	72	38.889	ENSORLG00000013621	-	63	31.899
ENSORLG00000009178	-	75	31.818	ENSORLG00000008509	ddx49	80	31.818
ENSORLG00000009178	-	78	30.287	ENSORLG00000015021	ddx47	78	30.446

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000009178	-	99	84.948	ENSAPOG00000014829	ddx61	99	84.948	Acanthochromis_polyacanthus
ENSORLG00000009178	-	77	95.200	ENSAPOG00000023627	-	95	95.200	Acanthochromis_polyacanthus
ENSORLG00000009178	-	100	86.653	ENSACIG00000018355	-	100	86.653	Amphilophus_citrinellus
ENSORLG00000009178	-	100	93.456	ENSAOCG00000006269	-	100	93.456	Amphiprion_ocellaris
ENSORLG00000009178	-	99	86.186	ENSAOCG00000007627	ddx61	99	86.186	Amphiprion_ocellaris
ENSORLG00000009178	-	100	93.456	ENSAPEG00000021368	-	100	93.456	Amphiprion_percula
ENSORLG00000009178	-	99	86.186	ENSAPEG00000007293	ddx61	99	86.186	Amphiprion_percula
ENSORLG00000009178	-	100	93.456	ENSAPEG00000020642	-	100	93.456	Amphiprion_percula
ENSORLG00000009178	-	100	91.820	ENSATEG00000005424	-	100	91.820	Anabas_testudineus
ENSORLG00000009178	-	98	85.804	ENSATEG00000011302	ddx61	99	85.804	Anabas_testudineus
ENSORLG00000009178	-	100	93.224	ENSACLG00000003260	-	100	93.224	Astatotilapia_calliptera
ENSORLG00000009178	-	98	86.430	ENSACLG00000027620	ddx61	99	86.430	Astatotilapia_calliptera
ENSORLG00000009178	-	97	86.345	ENSAMXG00000032542	ddx61	99	84.805	Astyanax_mexicanus
ENSORLG00000009178	-	98	88.750	ENSAMXG00000033980	-	97	88.750	Astyanax_mexicanus
ENSORLG00000009178	-	100	91.207	ENSCSEG00000009893	-	100	91.207	Cynoglossus_semilaevis
ENSORLG00000009178	-	100	90.000	ENSCVAG00000011006	-	100	90.000	Cyprinodon_variegatus
ENSORLG00000009178	-	97	86.017	ENSDARG00000018425	ddx61	98	86.017	Danio_rerio
ENSORLG00000009178	-	98	88.935	ENSELUG00000020545	ddx61	98	88.935	Esox_lucius
ENSORLG00000009178	-	98	88.589	ENSELUG00000022538	-	98	88.589	Esox_lucius
ENSORLG00000009178	-	100	90.184	ENSFHEG00000015487	-	100	90.184	Fundulus_heteroclitus
ENSORLG00000009178	-	66	86.544	ENSGMOG00000003561	-	100	87.538	Gadus_morhua
ENSORLG00000009178	-	96	88.211	ENSGMOG00000013762	ddx61	99	87.190	Gadus_morhua
ENSORLG00000009178	-	100	90.408	ENSGAFG00000015865	-	100	90.408	Gambusia_affinis
ENSORLG00000009178	-	99	92.324	ENSGACG00000002413	-	99	92.324	Gasterosteus_aculeatus
ENSORLG00000009178	-	99	84.381	ENSGACG00000003401	ddx61	100	84.381	Gasterosteus_aculeatus
ENSORLG00000009178	-	98	86.639	ENSHBUG00000017832	ddx61	99	86.639	Haplochromis_burtoni
ENSORLG00000009178	-	100	93.224	ENSHBUG00000017033	-	100	93.224	Haplochromis_burtoni
ENSORLG00000009178	-	100	88.344	ENSHCOG00000012238	-	100	88.344	Hippocampus_comes
ENSORLG00000009178	-	97	83.122	ENSHCOG00000008184	ddx61	97	83.122	Hippocampus_comes
ENSORLG00000009178	-	96	85.470	ENSIPUG00000012823	DDX6	97	85.470	Ictalurus_punctatus
ENSORLG00000009178	-	99	86.515	ENSIPUG00000008367	-	99	86.515	Ictalurus_punctatus
ENSORLG00000009178	-	100	93.827	ENSKMAG00000007213	-	100	93.827	Kryptolebias_marmoratus
ENSORLG00000009178	-	98	85.565	ENSLBEG00000001740	ddx61	99	85.565	Labrus_bergylta
ENSORLG00000009178	-	100	91.734	ENSLBEG00000016890	-	100	91.734	Labrus_bergylta
ENSORLG00000009178	-	98	83.984	ENSLACG00000015214	ddx61	100	83.984	Latimeria_chalumnae
ENSORLG00000009178	-	98	51.259	ENSLOCG00000004352	ddx61	98	51.370	Lepisosteus_oculatus
ENSORLG00000009178	-	100	92.857	ENSMAMG00000005559	-	100	92.857	Mastacembelus_armatus
ENSORLG00000009178	-	99	85.361	ENSMAMG00000005321	ddx61	99	85.361	Mastacembelus_armatus
ENSORLG00000009178	-	100	93.224	ENSMZEG00005026268	-	100	93.224	Maylandia_zebra
ENSORLG00000009178	-	98	86.639	ENSMZEG00005003556	ddx61	99	86.639	Maylandia_zebra
ENSORLG00000009178	-	96	85.928	ENSMMOG00000007415	ddx61	97	85.928	Mola_mola
ENSORLG00000009178	-	73	76.204	ENSMMOG00000008825	-	92	76.204	Mola_mola
ENSORLG00000009178	-	100	92.500	ENSMMOG00000013694	-	100	92.500	Mola_mola
ENSORLG00000009178	-	98	75.365	ENSMALG00000013776	ddx61	96	75.365	Monopterus_albus
ENSORLG00000009178	-	100	92.229	ENSMALG00000013817	-	100	92.229	Monopterus_albus
ENSORLG00000009178	-	100	86.653	ENSNBRG00000015075	-	100	86.653	Neolamprologus_brichardi
ENSORLG00000009178	-	98	79.498	ENSNBRG00000015800	ddx61	99	79.498	Neolamprologus_brichardi
ENSORLG00000009178	-	98	86.639	ENSONIG00000011418	ddx61	99	86.639	Oreochromis_niloticus
ENSORLG00000009178	-	100	93.429	ENSONIG00000013748	-	100	93.429	Oreochromis_niloticus
ENSORLG00000009178	-	100	99.383	ENSORLG00020015515	-	100	99.383	Oryzias_latipes_hni
ENSORLG00000009178	-	100	99.383	ENSORLG00015006764	-	100	99.383	Oryzias_latipes_hsok
ENSORLG00000009178	-	98	96.744	ENSOMEG00000022326	-	99	96.744	Oryzias_melastigma
ENSORLG00000009178	-	97	89.496	ENSPKIG00000024264	ddx61	98	88.981	Paramormyrops_kingsleyae
ENSORLG00000009178	-	100	81.520	ENSPMGG00000013355	-	100	81.595	Periophthalmus_magnuspinnatus
ENSORLG00000009178	-	100	91.393	ENSPFOG00000005750	-	100	91.393	Poecilia_formosa
ENSORLG00000009178	-	100	91.572	ENSPLAG00000000403	-	100	91.572	Poecilia_latipinna
ENSORLG00000009178	-	100	91.152	ENSPMEG00000023737	-	100	91.152	Poecilia_mexicana
ENSORLG00000009178	-	100	93.224	ENSPNYG00000003986	-	100	93.224	Pundamilia_nyererei
ENSORLG00000009178	-	98	80.426	ENSPNYG00000015045	ddx61	99	80.426	Pundamilia_nyererei
ENSORLG00000009178	-	99	88.636	ENSPNAG00000008742	-	98	88.636	Pygocentrus_nattereri
ENSORLG00000009178	-	98	85.714	ENSPNAG00000024072	ddx61	99	85.714	Pygocentrus_nattereri
ENSORLG00000009178	-	97	88.584	ENSSFOG00015021404	ddx61	99	86.735	Scleropages_formosus
ENSORLG00000009178	-	100	91.411	ENSSMAG00000001793	-	100	91.411	Scophthalmus_maximus
ENSORLG00000009178	-	96	86.325	ENSSMAG00000006591	ddx61	99	84.886	Scophthalmus_maximus
ENSORLG00000009178	-	96	87.846	ENSSDUG00000009713	ddx61	98	86.792	Seriola_dumerili
ENSORLG00000009178	-	100	93.878	ENSSDUG00000007530	-	100	93.878	Seriola_dumerili
ENSORLG00000009178	-	100	93.878	ENSSLDG00000007608	-	100	93.878	Seriola_lalandi_dorsalis
ENSORLG00000009178	-	96	87.633	ENSSLDG00000000132	ddx61	98	86.583	Seriola_lalandi_dorsalis
ENSORLG00000009178	-	96	87.821	ENSSPAG00000001578	ddx61	98	86.792	Stegastes_partitus
ENSORLG00000009178	-	100	94.479	ENSSPAG00000013878	-	99	95.952	Stegastes_partitus
ENSORLG00000009178	-	99	89.139	ENSTRUG00000012432	-	99	89.139	Takifugu_rubripes
ENSORLG00000009178	-	99	89.583	ENSTNIG00000003560	-	100	89.583	Tetraodon_nigroviridis
ENSORLG00000009178	-	100	90.930	ENSXCOG00000001406	-	100	90.930	Xiphophorus_couchianus
ENSORLG00000009178	-	100	90.930	ENSXMAG00000016090	-	100	90.930	Xiphophorus_maculatus