EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000009268 (Gene tree)
Gene ID: 101161448
Gene Symbol: srsf5a
Alias: -
Full Name: serine and arginine rich splicing factor 5
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 5776 bases
Position: chr22:1441319-1447094
Accession: 101161448
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000011626	RRM_1	PF00076.22	1.4e-32	1	2
ENSORLP00000011626	RRM_1	PF00076.22	1.4e-32	2	2
ENSORLP00000011623	RRM_1	PF00076.22	1.9e-32	1	2
ENSORLP00000011623	RRM_1	PF00076.22	1.9e-32	2	2
ENSORLP00000011627	RRM_1	PF00076.22	1.9e-32	1	2
ENSORLP00000011627	RRM_1	PF00076.22	1.9e-32	2	2
ENSORLP00000011623	RRM_3	PF08777.11	2.2e-07	1	1
ENSORLP00000011627	RRM_3	PF08777.11	2.2e-07	1	1
ENSORLP00000011626	RRM_3	PF08777.11	3.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000011628	-	2619	-	ENSORLP00000011627	296 (aa)	-	H2LZQ4
ENSORLT00000011624	-	2762	XM_020713521	ENSORLP00000011623	296 (aa)	XP_020569180	H2LZQ0
ENSORLT00000011627	-	1011	XM_004082079	ENSORLP00000011626	272 (aa)	XP_004082127	H2LZQ3

Gene Model

Click here to download ENSORLG00000009268's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG
ola05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000009268's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000009268	srsf5a	62	41.954	ENSORLG00000004580	srsf1a	67	43.103
ENSORLG00000009268	srsf5a	68	69.892	ENSORLG00000029854	srsf5b	72	60.177
ENSORLG00000009268	srsf5a	74	38.938	ENSORLG00000005314	-	76	44.335
ENSORLG00000009268	srsf5a	67	40.625	ENSORLG00000023709	srsf9	74	43.750

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000009268	srsf5a	100	78.716	ENSAPOG00000017395	srsf5a	78	78.448	Acanthochromis_polyacanthus
ENSORLG00000009268	srsf5a	84	79.828	ENSACIG00000011892	srsf5a	98	80.292	Amphilophus_citrinellus
ENSORLG00000009268	srsf5a	83	82.553	ENSAOCG00000014967	srsf5a	80	82.540	Amphiprion_ocellaris
ENSORLG00000009268	srsf5a	83	82.553	ENSAPEG00000009297	srsf5a	80	77.447	Amphiprion_percula
ENSORLG00000009268	srsf5a	92	84.291	ENSATEG00000000198	srsf5a	82	85.532	Anabas_testudineus
ENSORLG00000009268	srsf5a	67	77.049	ENSAPLG00000002469	-	71	72.021	Anas_platyrhynchos
ENSORLG00000009268	srsf5a	67	78.022	ENSACAG00000029015	-	69	73.057	Anolis_carolinensis
ENSORLG00000009268	srsf5a	83	84.519	ENSACLG00000027166	srsf5a	80	86.192	Astatotilapia_calliptera
ENSORLG00000009268	srsf5a	92	76.378	ENSAMXG00000030476	srsf5a	67	85.946	Astyanax_mexicanus
ENSORLG00000009268	srsf5a	67	79.235	ENSCPBG00000021518	-	70	74.346	Chrysemys_picta_bellii
ENSORLG00000009268	srsf5a	67	55.612	ENSCSAVG00000011376	-	78	57.143	Ciona_savignyi
ENSORLG00000009268	srsf5a	84	84.362	ENSCSEG00000008109	srsf5a	77	75.519	Cynoglossus_semilaevis
ENSORLG00000009268	srsf5a	83	81.148	ENSCVAG00000016982	srsf5a	97	80.597	Cyprinodon_variegatus
ENSORLG00000009268	srsf5a	68	85.638	ENSDARG00000029818	srsf5a	100	84.211	Danio_rerio
ENSORLG00000009268	srsf5a	67	79.381	ENSELUG00000020439	srsf5a	66	77.778	Esox_lucius
ENSORLG00000009268	srsf5a	67	76.796	ENSFALG00000005098	-	67	70.707	Ficedula_albicollis
ENSORLG00000009268	srsf5a	85	80.233	ENSFHEG00000003955	srsf5a	97	77.241	Fundulus_heteroclitus
ENSORLG00000009268	srsf5a	67	87.912	ENSGMOG00000000869	srsf5a	96	87.500	Gadus_morhua
ENSORLG00000009268	srsf5a	77	67.401	ENSGALG00000033259	SRSF5A	67	72.775	Gallus_gallus
ENSORLG00000009268	srsf5a	85	75.934	ENSGAFG00000018237	srsf5a	73	76.596	Gambusia_affinis
ENSORLG00000009268	srsf5a	67	91.160	ENSGACG00000011761	srsf5a	71	92.391	Gasterosteus_aculeatus
ENSORLG00000009268	srsf5a	67	79.235	ENSGAGG00000007312	-	70	74.346	Gopherus_agassizii
ENSORLG00000009268	srsf5a	83	84.874	ENSHBUG00000014048	srsf5a	80	86.555	Haplochromis_burtoni
ENSORLG00000009268	srsf5a	67	86.559	ENSHCOG00000017557	srsf5a	62	88.830	Hippocampus_comes
ENSORLG00000009268	srsf5a	100	71.972	ENSIPUG00000003439	srsf5a	70	82.383	Ictalurus_punctatus
ENSORLG00000009268	srsf5a	83	83.262	ENSKMAG00000014937	srsf5a	71	84.322	Kryptolebias_marmoratus
ENSORLG00000009268	srsf5a	67	83.590	ENSLBEG00000017153	srsf5a	74	84.694	Labrus_bergylta
ENSORLG00000009268	srsf5a	67	80.110	ENSLACG00000017874	-	70	75.000	Latimeria_chalumnae
ENSORLG00000009268	srsf5a	67	84.409	ENSLOCG00000014075	srsf5a	100	69.805	Lepisosteus_oculatus
ENSORLG00000009268	srsf5a	100	83.513	ENSMAMG00000000192	srsf5a	82	84.581	Mastacembelus_armatus
ENSORLG00000009268	srsf5a	83	84.874	ENSMZEG00005010485	srsf5a	80	86.555	Maylandia_zebra
ENSORLG00000009268	srsf5a	70	74.479	ENSMGAG00000011888	-	96	75.460	Meleagris_gallopavo
ENSORLG00000009268	srsf5a	100	80.339	ENSMMOG00000009793	srsf5a	77	89.474	Mola_mola
ENSORLG00000009268	srsf5a	93	72.857	ENSMALG00000021194	srsf5a	79	81.333	Monopterus_albus
ENSORLG00000009268	srsf5a	83	85.232	ENSNBRG00000000771	srsf5a	80	86.920	Neolamprologus_brichardi
ENSORLG00000009268	srsf5a	83	85.232	ENSONIG00000019583	srsf5a	80	86.920	Oreochromis_niloticus
ENSORLG00000009268	srsf5a	100	100.000	ENSORLG00020003281	srsf5	100	100.000	Oryzias_latipes_hni
ENSORLG00000009268	srsf5a	100	100.000	ENSORLG00015023075	srsf5	100	100.000	Oryzias_latipes_hsok
ENSORLG00000009268	srsf5a	100	97.059	ENSOMEG00000000628	srsf5a	100	97.059	Oryzias_melastigma
ENSORLG00000009268	srsf5a	67	85.027	ENSPKIG00000002054	srsf5a	69	84.127	Paramormyrops_kingsleyae
ENSORLG00000009268	srsf5a	67	78.571	ENSPSIG00000008238	-	69	73.545	Pelodiscus_sinensis
ENSORLG00000009268	srsf5a	85	64.082	ENSPMGG00000020125	srsf5a	55	80.328	Periophthalmus_magnuspinnatus
ENSORLG00000009268	srsf5a	85	80.784	ENSPFOG00000022993	srsf5a	78	81.526	Poecilia_formosa
ENSORLG00000009268	srsf5a	85	80.709	ENSPLAG00000005508	srsf5a	77	81.452	Poecilia_latipinna
ENSORLG00000009268	srsf5a	85	81.176	ENSPMEG00000016339	srsf5a	78	81.928	Poecilia_mexicana
ENSORLG00000009268	srsf5a	85	80.469	ENSPREG00000018091	srsf5a	93	73.203	Poecilia_reticulata
ENSORLG00000009268	srsf5a	83	84.874	ENSPNYG00000021245	srsf5a	80	86.555	Pundamilia_nyererei
ENSORLG00000009268	srsf5a	67	85.870	ENSPNAG00000021333	srsf5a	67	85.027	Pygocentrus_nattereri
ENSORLG00000009268	srsf5a	67	85.027	ENSSFOG00015008377	srsf5	86	78.049	Scleropages_formosus
ENSORLG00000009268	srsf5a	100	77.377	ENSSMAG00000010899	srsf5a	83	79.447	Scophthalmus_maximus
ENSORLG00000009268	srsf5a	92	80.916	ENSSDUG00000006103	srsf5a	80	77.826	Seriola_dumerili
ENSORLG00000009268	srsf5a	100	80.345	ENSSLDG00000004146	srsf5a	79	78.261	Seriola_lalandi_dorsalis
ENSORLG00000009268	srsf5a	67	75.275	ENSSPUG00000002052	-	70	74.595	Sphenodon_punctatus
ENSORLG00000009268	srsf5a	83	84.416	ENSSPAG00000002821	srsf5a	80	85.714	Stegastes_partitus
ENSORLG00000009268	srsf5a	61	77.348	ENSTGUG00000011492	-	69	76.087	Taeniopygia_guttata
ENSORLG00000009268	srsf5a	100	79.730	ENSTRUG00000022908	srsf5a	81	73.750	Takifugu_rubripes
ENSORLG00000009268	srsf5a	67	77.368	ENSXETG00000017937	srsf5a	72	77.487	Xenopus_tropicalis
ENSORLG00000009268	srsf5a	85	82.377	ENSXCOG00000015338	srsf5a	78	81.633	Xiphophorus_couchianus
ENSORLG00000009268	srsf5a	85	81.569	ENSXMAG00000012823	srsf5a	93	77.288	Xiphophorus_maculatus