EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000009275 (Gene tree)
Gene ID: 101165376
Gene Symbol: ptcd1
Alias: -
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 13593 bases
Position: chr1:22431472-22445064
Accession: 101165376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000011635	PPR	PF01535.20	8.2e-19	1	2
ENSORLP00000011635	PPR	PF01535.20	8.2e-19	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000011636	-	7281	XM_023958478	ENSORLP00000011635	674 (aa)	XP_023814246	H2LZR2

Gene Model

Click here to download ENSORLG00000009275's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000009275's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000009275	ptcd1	85	47.848	ENSG00000106246	PTCD1	85	47.776	Homo_sapiens
ENSORLG00000009275	ptcd1	85	47.848	ENSG00000248919	ATP5MF-PTCD1	80	47.776	Homo_sapiens
ENSORLG00000009275	ptcd1	91	64.355	ENSAPOG00000010679	ptcd1	96	64.355	Acanthochromis_polyacanthus
ENSORLG00000009275	ptcd1	85	48.760	ENSAMEG00000006224	-	79	48.760	Ailuropoda_melanoleuca
ENSORLG00000009275	ptcd1	95	69.138	ENSACIG00000017861	ptcd1	97	69.138	Amphilophus_citrinellus
ENSORLG00000009275	ptcd1	99	62.894	ENSAOCG00000020741	-	99	62.894	Amphiprion_ocellaris
ENSORLG00000009275	ptcd1	91	64.070	ENSAOCG00000022617	ptcd1	94	64.070	Amphiprion_ocellaris
ENSORLG00000009275	ptcd1	99	63.037	ENSAPEG00000022632	ptcd1	99	63.037	Amphiprion_percula
ENSORLG00000009275	ptcd1	99	64.861	ENSATEG00000007016	ptcd1	96	65.205	Anabas_testudineus
ENSORLG00000009275	ptcd1	82	50.258	ENSAPLG00000006862	-	90	50.258	Anas_platyrhynchos
ENSORLG00000009275	ptcd1	84	49.322	ENSACAG00000012871	-	78	49.322	Anolis_carolinensis
ENSORLG00000009275	ptcd1	85	47.145	ENSANAG00000035790	-	88	47.078	Aotus_nancymaae
ENSORLG00000009275	ptcd1	99	67.007	ENSACLG00000002824	ptcd1	96	67.007	Astatotilapia_calliptera
ENSORLG00000009275	ptcd1	89	49.541	ENSAMXG00000037292	ptcd1	91	49.541	Astyanax_mexicanus
ENSORLG00000009275	ptcd1	88	47.170	ENSBTAG00000020440	-	77	47.642	Bos_taurus
ENSORLG00000009275	ptcd1	85	47.947	ENSCJAG00000015815	-	86	47.876	Callithrix_jacchus
ENSORLG00000009275	ptcd1	86	47.812	ENSCAFG00000015055	-	80	47.812	Canis_familiaris
ENSORLG00000009275	ptcd1	86	47.890	ENSCAFG00020014480	-	80	47.890	Canis_lupus_dingo
ENSORLG00000009275	ptcd1	88	48.237	ENSCHIG00000027000	-	88	48.397	Capra_hircus
ENSORLG00000009275	ptcd1	85	46.293	ENSTSYG00000029495	-	85	46.557	Carlito_syrichta
ENSORLG00000009275	ptcd1	83	48.148	ENSCAPG00000014660	-	92	47.471	Cavia_aperea
ENSORLG00000009275	ptcd1	83	48.990	ENSCPOG00000001780	-	86	48.287	Cavia_porcellus
ENSORLG00000009275	ptcd1	85	48.440	ENSCCAG00000034025	-	86	48.366	Cebus_capucinus
ENSORLG00000009275	ptcd1	85	49.164	ENSCATG00000040859	-	85	49.085	Cercocebus_atys
ENSORLG00000009275	ptcd1	86	48.784	ENSCLAG00000006354	-	86	48.784	Chinchilla_lanigera
ENSORLG00000009275	ptcd1	79	48.649	ENSCSAG00000017794	-	82	49.195	Chlorocebus_sabaeus
ENSORLG00000009275	ptcd1	86	47.402	ENSCPBG00000020866	-	86	47.402	Chrysemys_picta_bellii
ENSORLG00000009275	ptcd1	86	48.837	ENSCANG00000023441	-	86	49.003	Colobus_angolensis_palliatus
ENSORLG00000009275	ptcd1	86	48.525	ENSCGRG00001023686	Ptcd1	86	48.768	Cricetulus_griseus_chok1gshd
ENSORLG00000009275	ptcd1	86	48.525	ENSCGRG00000015031	Ptcd1	86	48.768	Cricetulus_griseus_crigri
ENSORLG00000009275	ptcd1	99	59.238	ENSCSEG00000002378	ptcd1	95	59.384	Cynoglossus_semilaevis
ENSORLG00000009275	ptcd1	92	70.465	ENSCVAG00000003621	ptcd1	95	70.465	Cyprinodon_variegatus
ENSORLG00000009275	ptcd1	94	70.597	ENSCVAG00000015826	ptcd1	91	70.597	Cyprinodon_variegatus
ENSORLG00000009275	ptcd1	90	50.943	ENSDARG00000076176	ptcd1	90	50.943	Danio_rerio
ENSORLG00000009275	ptcd1	87	47.549	ENSDNOG00000009957	-	91	45.814	Dasypus_novemcinctus
ENSORLG00000009275	ptcd1	86	47.712	ENSDORG00000000740	Ptcd1	94	46.037	Dipodomys_ordii
ENSORLG00000009275	ptcd1	84	38.690	ENSEBUG00000014515	ptcd1	93	37.794	Eptatretus_burgeri
ENSORLG00000009275	ptcd1	87	47.923	ENSEASG00005002480	-	87	48.392	Equus_asinus_asinus
ENSORLG00000009275	ptcd1	87	47.923	ENSECAG00000016617	-	87	48.392	Equus_caballus
ENSORLG00000009275	ptcd1	84	57.921	ENSELUG00000016517	ptcd1	82	57.921	Esox_lucius
ENSORLG00000009275	ptcd1	89	47.731	ENSFCAG00000015069	-	89	47.731	Felis_catus
ENSORLG00000009275	ptcd1	94	46.211	ENSFALG00000013803	-	93	46.381	Ficedula_albicollis
ENSORLG00000009275	ptcd1	83	49.069	ENSFDAG00000006393	-	83	48.908	Fukomys_damarensis
ENSORLG00000009275	ptcd1	78	73.962	ENSFHEG00000012491	ptcd1	92	73.962	Fundulus_heteroclitus
ENSORLG00000009275	ptcd1	86	63.131	ENSGMOG00000007639	ptcd1	95	63.131	Gadus_morhua
ENSORLG00000009275	ptcd1	82	48.649	ENSGALG00000004711	-	83	49.073	Gallus_gallus
ENSORLG00000009275	ptcd1	87	72.315	ENSGAFG00000013175	ptcd1	89	70.400	Gambusia_affinis
ENSORLG00000009275	ptcd1	87	69.449	ENSGACG00000016607	ptcd1	93	69.449	Gasterosteus_aculeatus
ENSORLG00000009275	ptcd1	82	47.128	ENSGAGG00000021832	-	89	47.059	Gopherus_agassizii
ENSORLG00000009275	ptcd1	85	47.300	ENSGGOG00000015123	-	86	47.231	Gorilla_gorilla
ENSORLG00000009275	ptcd1	99	67.153	ENSHBUG00000018275	ptcd1	96	67.153	Haplochromis_burtoni
ENSORLG00000009275	ptcd1	87	48.792	ENSHGLG00000017621	-	87	48.792	Heterocephalus_glaber_female
ENSORLG00000009275	ptcd1	87	48.792	ENSHGLG00100007218	-	87	48.792	Heterocephalus_glaber_male
ENSORLG00000009275	ptcd1	89	60.333	ENSHCOG00000010784	ptcd1	87	61.000	Hippocampus_comes
ENSORLG00000009275	ptcd1	89	47.611	ENSSTOG00000001682	-	89	47.771	Ictidomys_tridecemlineatus
ENSORLG00000009275	ptcd1	86	47.954	ENSJJAG00000000319	Ptcd1	88	47.947	Jaculus_jaculus
ENSORLG00000009275	ptcd1	98	65.237	ENSKMAG00000008708	ptcd1	95	65.237	Kryptolebias_marmoratus
ENSORLG00000009275	ptcd1	99	62.216	ENSLBEG00000008061	ptcd1	95	63.265	Labrus_bergylta
ENSORLG00000009275	ptcd1	86	49.000	ENSLACG00000011172	ptcd1	84	49.000	Latimeria_chalumnae
ENSORLG00000009275	ptcd1	89	50.612	ENSLOCG00000004833	ptcd1	96	51.387	Lepisosteus_oculatus
ENSORLG00000009275	ptcd1	86	47.720	ENSLAFG00000002588	-	86	47.720	Loxodonta_africana
ENSORLG00000009275	ptcd1	85	49.164	ENSMFAG00000041324	-	85	49.085	Macaca_fascicularis
ENSORLG00000009275	ptcd1	85	48.997	ENSMMUG00000030408	-	85	48.918	Macaca_mulatta
ENSORLG00000009275	ptcd1	85	49.164	ENSMNEG00000043786	-	85	49.085	Macaca_nemestrina
ENSORLG00000009275	ptcd1	85	36.672	ENSMLEG00000031179	-	83	37.838	Mandrillus_leucophaeus
ENSORLG00000009275	ptcd1	99	64.327	ENSMAMG00000007623	ptcd1	95	64.327	Mastacembelus_armatus
ENSORLG00000009275	ptcd1	99	67.007	ENSMZEG00005012722	ptcd1	96	67.007	Maylandia_zebra
ENSORLG00000009275	ptcd1	86	47.826	ENSMGAG00000004211	-	81	47.826	Meleagris_gallopavo
ENSORLG00000009275	ptcd1	85	45.605	ENSMICG00000017428	-	85	45.470	Microcebus_murinus
ENSORLG00000009275	ptcd1	99	63.948	ENSMMOG00000020243	ptcd1	94	68.914	Mola_mola
ENSORLG00000009275	ptcd1	88	45.126	ENSMODG00000001350	-	85	45.126	Monodelphis_domestica
ENSORLG00000009275	ptcd1	91	67.675	ENSMALG00000018442	ptcd1	87	67.675	Monopterus_albus
ENSORLG00000009275	ptcd1	87	47.573	MGP_CAROLIEiJ_G0028011	Ptcd1	88	47.573	Mus_caroli
ENSORLG00000009275	ptcd1	87	47.222	ENSMUSG00000029624	Ptcd1	88	47.326	Mus_musculus
ENSORLG00000009275	ptcd1	88	48.089	MGP_PahariEiJ_G0024580	Ptcd1	89	48.320	Mus_pahari
ENSORLG00000009275	ptcd1	87	47.411	MGP_SPRETEiJ_G0029012	Ptcd1	88	47.573	Mus_spretus
ENSORLG00000009275	ptcd1	85	48.450	ENSMPUG00000016518	-	88	48.408	Mustela_putorius_furo
ENSORLG00000009275	ptcd1	88	48.714	ENSMLUG00000010994	-	82	49.120	Myotis_lucifugus
ENSORLG00000009275	ptcd1	99	64.338	ENSNBRG00000010079	ptcd1	96	67.119	Neolamprologus_brichardi
ENSORLG00000009275	ptcd1	76	47.681	ENSNLEG00000011060	-	90	47.681	Nomascus_leucogenys
ENSORLG00000009275	ptcd1	89	45.156	ENSMEUG00000006930	-	90	45.156	Notamacropus_eugenii
ENSORLG00000009275	ptcd1	75	54.955	ENSOPRG00000013647	-	76	58.407	Ochotona_princeps
ENSORLG00000009275	ptcd1	87	67.893	ENSONIG00000003168	ptcd1	99	67.893	Oreochromis_niloticus
ENSORLG00000009275	ptcd1	80	46.233	ENSOANG00000007728	-	75	46.233	Ornithorhynchus_anatinus
ENSORLG00000009275	ptcd1	83	49.063	ENSOCUG00000010584	-	82	48.900	Oryctolagus_cuniculus
ENSORLG00000009275	ptcd1	100	98.071	ENSORLG00020000988	ptcd1	100	98.071	Oryzias_latipes_hni
ENSORLG00000009275	ptcd1	100	97.774	ENSORLG00015010557	ptcd1	100	97.774	Oryzias_latipes_hsok
ENSORLG00000009275	ptcd1	99	85.180	ENSOMEG00000020627	ptcd1	99	85.180	Oryzias_melastigma
ENSORLG00000009275	ptcd1	85	47.282	ENSOGAG00000010877	-	86	47.697	Otolemur_garnettii
ENSORLG00000009275	ptcd1	88	44.817	ENSOARG00000018676	-	89	44.976	Ovis_aries
ENSORLG00000009275	ptcd1	85	47.682	ENSPPAG00000036024	-	85	47.769	Pan_paniscus
ENSORLG00000009275	ptcd1	89	48.044	ENSPPRG00000003478	-	90	48.044	Panthera_pardus
ENSORLG00000009275	ptcd1	85	47.848	ENSPTRG00000019452	-	85	47.934	Pan_troglodytes
ENSORLG00000009275	ptcd1	85	49.331	ENSPANG00000016730	-	85	49.502	Papio_anubis
ENSORLG00000009275	ptcd1	83	52.860	ENSPKIG00000014215	ptcd1	84	53.287	Paramormyrops_kingsleyae
ENSORLG00000009275	ptcd1	83	47.119	ENSPSIG00000011184	-	98	47.627	Pelodiscus_sinensis
ENSORLG00000009275	ptcd1	73	41.874	ENSPMAG00000009667	ptcd1	100	41.874	Petromyzon_marinus
ENSORLG00000009275	ptcd1	88	45.840	ENSPCIG00000024778	-	85	45.840	Phascolarctos_cinereus
ENSORLG00000009275	ptcd1	91	68.998	ENSPFOG00000004458	ptcd1	89	69.968	Poecilia_formosa
ENSORLG00000009275	ptcd1	87	71.070	ENSPLAG00000011051	ptcd1	89	70.418	Poecilia_latipinna
ENSORLG00000009275	ptcd1	91	70.128	ENSPMEG00000020547	ptcd1	89	70.128	Poecilia_mexicana
ENSORLG00000009275	ptcd1	91	68.489	ENSPREG00000000059	ptcd1	89	68.489	Poecilia_reticulata
ENSORLG00000009275	ptcd1	86	47.231	ENSPPYG00000017377	-	91	47.231	Pongo_abelii
ENSORLG00000009275	ptcd1	77	52.593	ENSPCAG00000001852	-	85	52.593	Procavia_capensis
ENSORLG00000009275	ptcd1	85	47.039	ENSPCOG00000018596	-	88	46.560	Propithecus_coquereli
ENSORLG00000009275	ptcd1	99	66.861	ENSPNYG00000019993	ptcd1	96	66.861	Pundamilia_nyererei
ENSORLG00000009275	ptcd1	87	51.369	ENSPNAG00000014931	ptcd1	90	52.013	Pygocentrus_nattereri
ENSORLG00000009275	ptcd1	83	48.900	ENSRNOG00000000987	Ptcd1	85	49.073	Rattus_norvegicus
ENSORLG00000009275	ptcd1	86	49.169	ENSRBIG00000043393	-	86	49.336	Rhinopithecus_bieti
ENSORLG00000009275	ptcd1	86	49.169	ENSRROG00000036420	-	86	49.336	Rhinopithecus_roxellana
ENSORLG00000009275	ptcd1	88	48.154	ENSSBOG00000024114	-	87	48.460	Saimiri_boliviensis_boliviensis
ENSORLG00000009275	ptcd1	83	48.393	ENSSHAG00000011376	-	88	48.393	Sarcophilus_harrisii
ENSORLG00000009275	ptcd1	89	51.020	ENSSFOG00015007909	ptcd1	86	51.020	Scleropages_formosus
ENSORLG00000009275	ptcd1	87	66.000	ENSSMAG00000000218	ptcd1	95	66.000	Scophthalmus_maximus
ENSORLG00000009275	ptcd1	96	67.511	ENSSDUG00000015671	ptcd1	97	67.511	Seriola_dumerili
ENSORLG00000009275	ptcd1	96	66.567	ENSSLDG00000014261	ptcd1	96	66.567	Seriola_lalandi_dorsalis
ENSORLG00000009275	ptcd1	82	48.074	ENSSPUG00000003540	-	80	48.074	Sphenodon_punctatus
ENSORLG00000009275	ptcd1	98	65.789	ENSSPAG00000011049	ptcd1	95	66.082	Stegastes_partitus
ENSORLG00000009275	ptcd1	88	48.963	ENSSSCG00000007622	-	93	48.963	Sus_scrofa
ENSORLG00000009275	ptcd1	82	49.217	ENSTGUG00000007563	-	94	49.565	Taeniopygia_guttata
ENSORLG00000009275	ptcd1	91	66.041	ENSTRUG00000013471	ptcd1	88	65.835	Takifugu_rubripes
ENSORLG00000009275	ptcd1	87	67.169	ENSTNIG00000008271	ptcd1	87	67.169	Tetraodon_nigroviridis
ENSORLG00000009275	ptcd1	85	46.656	ENSTBEG00000011021	-	86	46.656	Tupaia_belangeri
ENSORLG00000009275	ptcd1	88	46.772	ENSTTRG00000003006	-	89	46.772	Tursiops_truncatus
ENSORLG00000009275	ptcd1	88	47.276	ENSUAMG00000008049	-	88	47.276	Ursus_americanus
ENSORLG00000009275	ptcd1	84	48.922	ENSVVUG00000008836	-	85	48.922	Vulpes_vulpes
ENSORLG00000009275	ptcd1	85	46.346	ENSXETG00000009891	ptcd1	86	46.346	Xenopus_tropicalis
ENSORLG00000009275	ptcd1	87	72.542	ENSXMAG00000015540	ptcd1	89	70.645	Xiphophorus_maculatus