EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000009671 (Gene tree)
Gene ID: 101163923
Gene Symbol: msi2a
Alias: -
Full Name: musashi RNA binding protein 2
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 310201 bases
Position: chr14:16944982-17255182
Accession: 101163923
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000036982	RRM_1	PF00076.22	2.3e-33	1	2
ENSORLP00000036982	RRM_1	PF00076.22	2.3e-33	2	2
ENSORLP00000030342	RRM_1	PF00076.22	2.7e-33	1	2
ENSORLP00000030342	RRM_1	PF00076.22	2.7e-33	2	2
ENSORLP00000030675	RRM_1	PF00076.22	4.3e-33	1	2
ENSORLP00000030675	RRM_1	PF00076.22	4.3e-33	2	2
ENSORLP00000043770	RRM_1	PF00076.22	4.3e-33	1	2
ENSORLP00000043770	RRM_1	PF00076.22	4.3e-33	2	2
ENSORLP00000012129	RRM_1	PF00076.22	9.7e-29	1	2
ENSORLP00000012129	RRM_1	PF00076.22	9.7e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000044165	-	4330	XM_023962327	ENSORLP00000030675	388 (aa)	XP_023818095	UPI000CE230B7
ENSORLT00000012130	-	933	-	ENSORLP00000012129	310 (aa)	-	H2M148
ENSORLT00000029932	-	4016	-	ENSORLP00000036982	308 (aa)	-	-
ENSORLT00000030504	-	4259	-	ENSORLP00000043770	389 (aa)	-	-
ENSORLT00000039702	-	4079	-	ENSORLP00000030342	329 (aa)	-	-

Gene Model

Click here to download ENSORLG00000009671's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000009671's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000009671	msi2a	59	40.217	ENSORLG00000017561	hnrnpa3	96	33.981
ENSORLG00000009671	msi2a	62	46.667	ENSORLG00000026044	hnrnpabb	83	39.777
ENSORLG00000009671	msi2a	56	41.279	ENSORLG00000008001	-	93	35.106
ENSORLG00000009671	msi2a	56	37.975	ENSORLG00000023542	-	60	37.975
ENSORLG00000009671	msi2a	100	72.050	ENSORLG00000019978	-	100	72.050
ENSORLG00000009671	msi2a	55	33.529	ENSORLG00000025332	-	59	33.529
ENSORLG00000009671	msi2a	59	36.364	ENSORLG00000026571	-	97	36.364
ENSORLG00000009671	msi2a	55	35.593	ENSORLG00000029240	-	94	36.207
ENSORLG00000009671	msi2a	55	33.529	ENSORLG00000025015	-	59	33.529
ENSORLG00000009671	msi2a	61	35.754	ENSORLG00000024157	-	62	36.306
ENSORLG00000009671	msi2a	61	46.524	ENSORLG00000001833	hnrnpd	69	46.524
ENSORLG00000009671	msi2a	98	67.246	ENSORLG00000029593	MSI1	99	70.234
ENSORLG00000009671	msi2a	62	33.529	ENSORLG00000030284	-	63	33.548
ENSORLG00000009671	msi2a	56	37.143	ENSORLG00000023176	-	68	35.802
ENSORLG00000009671	msi2a	56	49.425	ENSORLG00000005327	hnrnpaba	57	47.668
ENSORLG00000009671	msi2a	59	36.932	ENSORLG00000027074	-	81	37.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000009671	msi2a	95	92.675	ENSG00000153944	MSI2	96	92.381	Homo_sapiens
ENSORLG00000009671	msi2a	100	100.000	ENSAPOG00000001658	msi2a	100	100.000	Acanthochromis_polyacanthus
ENSORLG00000009671	msi2a	94	87.742	ENSAMEG00000002697	MSI2	99	87.742	Ailuropoda_melanoleuca
ENSORLG00000009671	msi2a	95	100.000	ENSACIG00000009475	msi2a	100	94.643	Amphilophus_citrinellus
ENSORLG00000009671	msi2a	62	82.000	ENSAOCG00000014822	msi2a	69	85.185	Amphiprion_ocellaris
ENSORLG00000009671	msi2a	100	97.125	ENSAPEG00000007706	msi2a	100	97.125	Amphiprion_percula
ENSORLG00000009671	msi2a	94	92.806	ENSATEG00000003301	-	100	92.806	Anabas_testudineus
ENSORLG00000009671	msi2a	100	100.000	ENSATEG00000010498	msi2a	100	100.000	Anabas_testudineus
ENSORLG00000009671	msi2a	90	93.478	ENSACAG00000005452	MSI2	88	81.638	Anolis_carolinensis
ENSORLG00000009671	msi2a	95	92.675	ENSANAG00000037827	MSI2	96	92.381	Aotus_nancymaae
ENSORLG00000009671	msi2a	100	97.125	ENSACLG00000007752	msi2a	100	99.588	Astatotilapia_calliptera
ENSORLG00000009671	msi2a	100	96.296	ENSAMXG00000010474	msi2b	100	93.041	Astyanax_mexicanus
ENSORLG00000009671	msi2a	100	96.296	ENSAMXG00000032796	msi2a	100	94.087	Astyanax_mexicanus
ENSORLG00000009671	msi2a	94	92.808	ENSBTAG00000004406	MSI2	97	92.808	Bos_taurus
ENSORLG00000009671	msi2a	75	59.514	WBGene00003423	msi-1	73	61.638	Caenorhabditis_elegans
ENSORLG00000009671	msi2a	95	92.675	ENSCJAG00000013998	MSI2	96	92.381	Callithrix_jacchus
ENSORLG00000009671	msi2a	94	87.702	ENSCAFG00020025620	MSI2	81	87.742	Canis_lupus_dingo
ENSORLG00000009671	msi2a	94	93.493	ENSCHIG00000016580	MSI2	94	93.493	Capra_hircus
ENSORLG00000009671	msi2a	94	88.298	ENSCPOG00000034042	MSI2	99	88.298	Cavia_porcellus
ENSORLG00000009671	msi2a	95	92.675	ENSCCAG00000033927	MSI2	96	92.381	Cebus_capucinus
ENSORLG00000009671	msi2a	95	92.417	ENSCATG00000040879	MSI2	96	92.063	Cercocebus_atys
ENSORLG00000009671	msi2a	95	87.651	ENSCLAG00000014325	MSI2	96	87.387	Chinchilla_lanigera
ENSORLG00000009671	msi2a	95	92.675	ENSCSAG00000005633	MSI2	96	92.381	Chlorocebus_sabaeus
ENSORLG00000009671	msi2a	90	65.827	ENSCHOG00000008660	MSI2	83	86.275	Choloepus_hoffmanni
ENSORLG00000009671	msi2a	94	94.581	ENSCPBG00000009942	MSI2	95	86.142	Chrysemys_picta_bellii
ENSORLG00000009671	msi2a	87	53.171	ENSCING00000018579	-	90	52.632	Ciona_intestinalis
ENSORLG00000009671	msi2a	87	53.667	ENSCSAVG00000010397	-	95	56.803	Ciona_savignyi
ENSORLG00000009671	msi2a	95	92.417	ENSCANG00000036414	MSI2	100	87.742	Colobus_angolensis_palliatus
ENSORLG00000009671	msi2a	95	92.063	ENSCGRG00001013330	Msi2	96	91.772	Cricetulus_griseus_chok1gshd
ENSORLG00000009671	msi2a	94	87.460	ENSCGRG00000003141	Msi2	100	87.460	Cricetulus_griseus_crigri
ENSORLG00000009671	msi2a	61	77.596	ENSCSEG00000013549	msi2a	100	77.596	Cynoglossus_semilaevis
ENSORLG00000009671	msi2a	100	79.012	ENSCSEG00000003266	-	100	79.012	Cynoglossus_semilaevis
ENSORLG00000009671	msi2a	86	80.928	ENSCSEG00000013557	msi2a	97	79.897	Cynoglossus_semilaevis
ENSORLG00000009671	msi2a	100	99.485	ENSCVAG00000017075	msi2a	100	100.000	Cyprinodon_variegatus
ENSORLG00000009671	msi2a	100	90.206	ENSDARG00000033901	msi2a	100	90.206	Danio_rerio
ENSORLG00000009671	msi2a	95	97.119	ENSDARG00000032614	msi2b	100	97.030	Danio_rerio
ENSORLG00000009671	msi2a	94	93.056	ENSDNOG00000014501	MSI2	100	93.056	Dasypus_novemcinctus
ENSORLG00000009671	msi2a	55	96.460	ENSDORG00000028440	-	100	96.460	Dipodomys_ordii
ENSORLG00000009671	msi2a	82	81.726	ENSDORG00000005394	Msi2	84	81.726	Dipodomys_ordii
ENSORLG00000009671	msi2a	94	53.593	FBgn0260943	Rbp6	90	64.626	Drosophila_melanogaster
ENSORLG00000009671	msi2a	72	72.368	ENSETEG00000012450	-	64	72.368	Echinops_telfairi
ENSORLG00000009671	msi2a	93	64.401	ENSEBUG00000006732	msi2a	86	64.401	Eptatretus_burgeri
ENSORLG00000009671	msi2a	94	90.301	ENSEASG00005002965	MSI2	97	80.896	Equus_asinus_asinus
ENSORLG00000009671	msi2a	94	91.739	ENSECAG00000011435	MSI2	100	84.507	Equus_caballus
ENSORLG00000009671	msi2a	86	77.778	ENSEEUG00000007810	MSI2	100	77.470	Erinaceus_europaeus
ENSORLG00000009671	msi2a	100	92.971	ENSELUG00000011747	msi2a	100	92.971	Esox_lucius
ENSORLG00000009671	msi2a	100	95.902	ENSELUG00000001361	msi2b	100	91.899	Esox_lucius
ENSORLG00000009671	msi2a	95	92.675	ENSFCAG00000041686	MSI2	96	92.381	Felis_catus
ENSORLG00000009671	msi2a	51	75.000	ENSFCAG00000033787	-	82	75.000	Felis_catus
ENSORLG00000009671	msi2a	94	87.742	ENSFDAG00000016118	MSI2	100	87.742	Fukomys_damarensis
ENSORLG00000009671	msi2a	100	100.000	ENSFHEG00000000084	msi2a	100	97.125	Fundulus_heteroclitus
ENSORLG00000009671	msi2a	59	97.115	ENSGMOG00000007596	-	100	97.115	Gadus_morhua
ENSORLG00000009671	msi2a	98	84.593	ENSGALG00000005567	MSI2	99	84.593	Gallus_gallus
ENSORLG00000009671	msi2a	96	87.869	ENSGAFG00000006974	msi2a	90	100.000	Gambusia_affinis
ENSORLG00000009671	msi2a	100	85.283	ENSGAGG00000016542	MSI2	100	84.868	Gopherus_agassizii
ENSORLG00000009671	msi2a	95	92.417	ENSGGOG00000013182	MSI2	100	87.742	Gorilla_gorilla
ENSORLG00000009671	msi2a	100	99.588	ENSHBUG00000020800	msi2a	100	99.588	Haplochromis_burtoni
ENSORLG00000009671	msi2a	95	78.313	ENSHGLG00000012444	MSI2	96	78.078	Heterocephalus_glaber_female
ENSORLG00000009671	msi2a	55	96.491	ENSHGLG00100004028	-	87	96.491	Heterocephalus_glaber_male
ENSORLG00000009671	msi2a	79	84.058	ENSHGLG00100003744	MSI2	100	84.058	Heterocephalus_glaber_male
ENSORLG00000009671	msi2a	99	99.588	ENSHCOG00000000266	msi2a	100	93.857	Hippocampus_comes
ENSORLG00000009671	msi2a	95	81.481	ENSHCOG00000017241	-	98	70.324	Hippocampus_comes
ENSORLG00000009671	msi2a	97	95.062	ENSIPUG00000021097	msi2a	100	95.062	Ictalurus_punctatus
ENSORLG00000009671	msi2a	100	96.296	ENSIPUG00000003732	msi2b	100	92.526	Ictalurus_punctatus
ENSORLG00000009671	msi2a	94	88.298	ENSSTOG00000007884	MSI2	99	88.298	Ictidomys_tridecemlineatus
ENSORLG00000009671	msi2a	79	78.894	ENSJJAG00000006292	-	100	78.392	Jaculus_jaculus
ENSORLG00000009671	msi2a	55	96.460	ENSJJAG00000009467	-	100	96.460	Jaculus_jaculus
ENSORLG00000009671	msi2a	100	99.588	ENSKMAG00000009494	msi2a	100	99.227	Kryptolebias_marmoratus
ENSORLG00000009671	msi2a	100	100.000	ENSLBEG00000007061	msi2a	100	97.125	Labrus_bergylta
ENSORLG00000009671	msi2a	88	86.528	ENSLBEG00000026223	-	96	86.528	Labrus_bergylta
ENSORLG00000009671	msi2a	55	92.941	ENSLACG00000016798	MSI2	98	92.308	Latimeria_chalumnae
ENSORLG00000009671	msi2a	100	94.330	ENSLOCG00000004675	msi2b	100	94.330	Lepisosteus_oculatus
ENSORLG00000009671	msi2a	95	92.417	ENSMFAG00000003775	MSI2	100	87.742	Macaca_fascicularis
ENSORLG00000009671	msi2a	95	92.417	ENSMMUG00000002069	MSI2	100	87.742	Macaca_mulatta
ENSORLG00000009671	msi2a	95	92.675	ENSMNEG00000045275	MSI2	96	92.381	Macaca_nemestrina
ENSORLG00000009671	msi2a	95	92.417	ENSMLEG00000033888	MSI2	100	87.742	Mandrillus_leucophaeus
ENSORLG00000009671	msi2a	100	100.000	ENSMAMG00000010503	msi2a	100	100.000	Mastacembelus_armatus
ENSORLG00000009671	msi2a	95	94.650	ENSMAMG00000002488	-	99	94.040	Mastacembelus_armatus
ENSORLG00000009671	msi2a	100	99.588	ENSMZEG00005007676	msi2a	100	99.588	Maylandia_zebra
ENSORLG00000009671	msi2a	95	87.087	ENSMAUG00000003862	Msi2	96	86.826	Mesocricetus_auratus
ENSORLG00000009671	msi2a	100	91.489	ENSMICG00000013598	-	100	91.489	Microcebus_murinus
ENSORLG00000009671	msi2a	95	72.414	ENSMICG00000032913	-	96	73.750	Microcebus_murinus
ENSORLG00000009671	msi2a	95	87.349	ENSMOCG00000005820	Msi2	96	87.087	Microtus_ochrogaster
ENSORLG00000009671	msi2a	97	93.827	ENSMMOG00000008348	msi2a	90	94.161	Mola_mola
ENSORLG00000009671	msi2a	79	83.575	ENSMODG00000014790	MSI2	100	83.575	Monodelphis_domestica
ENSORLG00000009671	msi2a	100	99.346	ENSMALG00000000071	msi2a	100	100.000	Monopterus_albus
ENSORLG00000009671	msi2a	95	92.357	MGP_CAROLIEiJ_G0016948	Msi2	100	96.460	Mus_caroli
ENSORLG00000009671	msi2a	95	92.357	ENSMUSG00000069769	Msi2	100	96.460	Mus_musculus
ENSORLG00000009671	msi2a	95	92.357	MGP_PahariEiJ_G0018079	Msi2	100	96.460	Mus_pahari
ENSORLG00000009671	msi2a	95	92.357	MGP_SPRETEiJ_G0017795	Msi2	100	96.460	Mus_spretus
ENSORLG00000009671	msi2a	94	93.151	ENSMPUG00000015377	MSI2	97	93.151	Mustela_putorius_furo
ENSORLG00000009671	msi2a	94	93.151	ENSMLUG00000007865	MSI2	97	93.151	Myotis_lucifugus
ENSORLG00000009671	msi2a	95	87.349	ENSNGAG00000017807	Msi2	96	87.087	Nannospalax_galili
ENSORLG00000009671	msi2a	100	99.742	ENSNBRG00000014596	msi2a	100	99.742	Neolamprologus_brichardi
ENSORLG00000009671	msi2a	94	92.444	ENSNLEG00000008059	MSI2	96	92.891	Nomascus_leucogenys
ENSORLG00000009671	msi2a	71	83.553	ENSOPRG00000000872	-	64	83.553	Ochotona_princeps
ENSORLG00000009671	msi2a	95	87.651	ENSODEG00000011974	MSI2	96	87.387	Octodon_degus
ENSORLG00000009671	msi2a	62	100.000	ENSONIG00000001972	msi2a	84	100.000	Oreochromis_niloticus
ENSORLG00000009671	msi2a	93	92.308	ENSOANG00000005667	MSI2	99	76.123	Ornithorhynchus_anatinus
ENSORLG00000009671	msi2a	94	93.151	ENSOCUG00000010440	MSI2	97	93.151	Oryctolagus_cuniculus
ENSORLG00000009671	msi2a	100	100.000	ENSORLG00020021556	msi2a	100	100.000	Oryzias_latipes_hni
ENSORLG00000009671	msi2a	100	100.000	ENSORLG00015004592	msi2a	100	100.000	Oryzias_latipes_hsok
ENSORLG00000009671	msi2a	100	100.000	ENSOMEG00000000146	msi2a	100	100.000	Oryzias_melastigma
ENSORLG00000009671	msi2a	94	89.384	ENSOGAG00000005621	MSI2	99	89.384	Otolemur_garnettii
ENSORLG00000009671	msi2a	94	87.742	ENSPPAG00000037697	MSI2	100	87.742	Pan_paniscus
ENSORLG00000009671	msi2a	94	93.151	ENSPPRG00000001848	MSI2	94	93.151	Panthera_pardus
ENSORLG00000009671	msi2a	78	75.314	ENSPTIG00000021873	-	91	75.314	Panthera_tigris_altaica
ENSORLG00000009671	msi2a	94	87.742	ENSPTIG00000021678	MSI2	96	87.742	Panthera_tigris_altaica
ENSORLG00000009671	msi2a	95	92.417	ENSPTRG00000009437	MSI2	100	87.742	Pan_troglodytes
ENSORLG00000009671	msi2a	95	92.675	ENSPANG00000022319	MSI2	96	92.381	Papio_anubis
ENSORLG00000009671	msi2a	95	90.102	ENSPKIG00000007038	-	96	93.004	Paramormyrops_kingsleyae
ENSORLG00000009671	msi2a	52	95.604	ENSPKIG00000017107	-	81	95.604	Paramormyrops_kingsleyae
ENSORLG00000009671	msi2a	95	95.076	ENSPSIG00000008618	MSI2	100	86.453	Pelodiscus_sinensis
ENSORLG00000009671	msi2a	100	96.486	ENSPMGG00000005888	msi2a	100	96.486	Periophthalmus_magnuspinnatus
ENSORLG00000009671	msi2a	55	96.460	ENSPEMG00000021793	-	100	96.460	Peromyscus_maniculatus_bairdii
ENSORLG00000009671	msi2a	100	85.070	ENSPCIG00000006063	MSI2	100	85.070	Phascolarctos_cinereus
ENSORLG00000009671	msi2a	60	99.048	ENSPFOG00000019337	MSI2	92	99.048	Poecilia_formosa
ENSORLG00000009671	msi2a	62	100.000	ENSPLAG00000000436	msi2a	76	96.479	Poecilia_latipinna
ENSORLG00000009671	msi2a	62	88.971	ENSPMEG00000013247	msi2a	75	93.388	Poecilia_mexicana
ENSORLG00000009671	msi2a	95	100.000	ENSPREG00000000881	msi2a	100	94.840	Poecilia_reticulata
ENSORLG00000009671	msi2a	94	89.916	ENSPPYG00000008244	-	100	89.916	Pongo_abelii
ENSORLG00000009671	msi2a	69	86.538	ENSPCAG00000010552	MSI2	100	64.286	Procavia_capensis
ENSORLG00000009671	msi2a	55	95.420	ENSPCOG00000019195	-	93	95.652	Propithecus_coquereli
ENSORLG00000009671	msi2a	94	85.274	ENSPVAG00000017053	MSI2	99	85.274	Pteropus_vampyrus
ENSORLG00000009671	msi2a	100	97.125	ENSPNYG00000018393	msi2a	100	99.588	Pundamilia_nyererei
ENSORLG00000009671	msi2a	100	92.802	ENSPNAG00000000844	msi2b	100	92.802	Pygocentrus_nattereri
ENSORLG00000009671	msi2a	100	94.344	ENSPNAG00000014957	msi2a	100	94.344	Pygocentrus_nattereri
ENSORLG00000009671	msi2a	94	92.806	ENSRNOG00000025338	Msi2	100	92.806	Rattus_norvegicus
ENSORLG00000009671	msi2a	51	73.626	ENSRBIG00000032064	-	84	78.947	Rhinopithecus_bieti
ENSORLG00000009671	msi2a	55	96.491	ENSRROG00000034421	-	92	96.491	Rhinopithecus_roxellana
ENSORLG00000009671	msi2a	94	92.857	ENSSBOG00000026425	MSI2	100	87.742	Saimiri_boliviensis_boliviensis
ENSORLG00000009671	msi2a	94	87.742	ENSSHAG00000008672	MSI2	100	87.742	Sarcophilus_harrisii
ENSORLG00000009671	msi2a	95	80.165	ENSSFOG00015012168	msi2b	100	72.059	Scleropages_formosus
ENSORLG00000009671	msi2a	94	89.384	ENSSFOG00015021687	-	97	93.243	Scleropages_formosus
ENSORLG00000009671	msi2a	100	100.000	ENSSMAG00000018484	msi2a	100	100.000	Scophthalmus_maximus
ENSORLG00000009671	msi2a	100	97.125	ENSSDUG00000014507	msi2a	100	100.000	Seriola_dumerili
ENSORLG00000009671	msi2a	100	82.388	ENSSDUG00000021968	-	99	94.040	Seriola_dumerili
ENSORLG00000009671	msi2a	100	100.000	ENSSLDG00000017172	msi2a	100	100.000	Seriola_lalandi_dorsalis
ENSORLG00000009671	msi2a	62	92.405	ENSSPUG00000000913	-	94	92.405	Sphenodon_punctatus
ENSORLG00000009671	msi2a	100	100.000	ENSSPAG00000017793	msi2a	100	100.000	Stegastes_partitus
ENSORLG00000009671	msi2a	100	91.489	ENSSSCG00000038505	MSI2	100	93.416	Sus_scrofa
ENSORLG00000009671	msi2a	79	84.058	ENSTGUG00000008452	MSI2	100	84.058	Taeniopygia_guttata
ENSORLG00000009671	msi2a	94	99.203	ENSTRUG00000021248	msi2a	100	89.552	Takifugu_rubripes
ENSORLG00000009671	msi2a	79	77.686	ENSTBEG00000001241	MSI2	73	77.686	Tupaia_belangeri
ENSORLG00000009671	msi2a	94	84.454	ENSTTRG00000002189	MSI2	91	94.737	Tursiops_truncatus
ENSORLG00000009671	msi2a	94	93.151	ENSUAMG00000000700	MSI2	97	93.151	Ursus_americanus
ENSORLG00000009671	msi2a	93	91.085	ENSUMAG00000000505	MSI2	100	93.782	Ursus_maritimus
ENSORLG00000009671	msi2a	59	81.868	ENSVPAG00000006837	-	62	81.868	Vicugna_pacos
ENSORLG00000009671	msi2a	95	93.141	ENSVVUG00000011783	MSI2	98	91.324	Vulpes_vulpes
ENSORLG00000009671	msi2a	100	97.680	ENSXCOG00000006113	msi2a	100	97.680	Xiphophorus_couchianus
ENSORLG00000009671	msi2a	100	95.086	ENSXMAG00000000608	msi2a	100	100.000	Xiphophorus_maculatus