EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000009837 (Gene tree)
Gene ID: 101165557
Gene Symbol: tnrc6c1
Alias: -
Full Name: trinucleotide repeat-containing gene 6C protein
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 17139 bases
Position: chr8:13128370-13145508
Accession: 101165557
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000038915	Ago_hook	PF10427.9	3.4e-05	1	1
ENSORLP00000012343	Ago_hook	PF10427.9	3.7e-05	1	1
ENSORLP00000037367	RRM_1	PF00076.22	0.00015	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000035311	-	7638	XM_020705355	ENSORLP00000031598	1723 (aa)	XP_020561014	UPI0009D9B7FF
ENSORLT00000012344	-	5046	-	ENSORLP00000012343	1681 (aa)	-	H2M1Q9
ENSORLT00000041006	-	7527	XM_011478259	ENSORLP00000038915	1686 (aa)	XP_011476561	UPI0005CBEFC0
ENSORLT00000028972	-	801	-	ENSORLP00000037367	266 (aa)	-	-

Gene Model

Click here to download ENSORLG00000009837's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000009837's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000009837	tnrc6c1	100	76.923	ENSORLG00000003327	tnrc6c2	90	53.825

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000009837	tnrc6c1	100	66.914	ENSG00000078687	TNRC6C	97	50.442	Homo_sapiens
ENSORLG00000009837	tnrc6c1	100	85.455	ENSAPOG00000019749	tnrc6c1	100	80.398	Acanthochromis_polyacanthus
ENSORLG00000009837	tnrc6c1	100	68.773	ENSAMEG00000013756	TNRC6C	98	46.558	Ailuropoda_melanoleuca
ENSORLG00000009837	tnrc6c1	100	78.676	ENSACIG00000008075	tnrc6c1	99	69.578	Amphilophus_citrinellus
ENSORLG00000009837	tnrc6c1	100	85.818	ENSAOCG00000023968	tnrc6c1	100	80.175	Amphiprion_ocellaris
ENSORLG00000009837	tnrc6c1	100	85.818	ENSAPEG00000009020	tnrc6c1	100	80.234	Amphiprion_percula
ENSORLG00000009837	tnrc6c1	100	69.742	ENSAPLG00000005456	TNRC6C	94	45.913	Anas_platyrhynchos
ENSORLG00000009837	tnrc6c1	100	68.401	ENSACAG00000016198	TNRC6C	92	46.847	Anolis_carolinensis
ENSORLG00000009837	tnrc6c1	100	67.286	ENSANAG00000021554	TNRC6C	91	50.275	Aotus_nancymaae
ENSORLG00000009837	tnrc6c1	100	88.433	ENSACLG00000000622	-	98	78.293	Astatotilapia_calliptera
ENSORLG00000009837	tnrc6c1	100	81.955	ENSACLG00000000424	tnrc6c1	99	69.791	Astatotilapia_calliptera
ENSORLG00000009837	tnrc6c1	100	67.658	ENSBTAG00000018658	TNRC6C	91	50.305	Bos_taurus
ENSORLG00000009837	tnrc6c1	100	67.286	ENSCJAG00000019431	TNRC6C	91	50.427	Callithrix_jacchus
ENSORLG00000009837	tnrc6c1	100	68.401	ENSCAFG00000005224	TNRC6C	92	47.596	Canis_familiaris
ENSORLG00000009837	tnrc6c1	100	68.401	ENSCAFG00020006661	TNRC6C	100	48.195	Canis_lupus_dingo
ENSORLG00000009837	tnrc6c1	100	68.401	ENSCHIG00000026004	TNRC6C	91	50.277	Capra_hircus
ENSORLG00000009837	tnrc6c1	100	67.658	ENSTSYG00000005403	TNRC6C	92	49.070	Carlito_syrichta
ENSORLG00000009837	tnrc6c1	100	61.338	ENSCAPG00000007307	TNRC6C	93	44.232	Cavia_aperea
ENSORLG00000009837	tnrc6c1	100	66.543	ENSCPOG00000000467	TNRC6C	99	47.668	Cavia_porcellus
ENSORLG00000009837	tnrc6c1	100	67.286	ENSCCAG00000030524	TNRC6C	91	50.306	Cebus_capucinus
ENSORLG00000009837	tnrc6c1	100	67.286	ENSCATG00000033135	TNRC6C	91	50.306	Cercocebus_atys
ENSORLG00000009837	tnrc6c1	100	67.286	ENSCLAG00000011139	TNRC6C	93	48.433	Chinchilla_lanigera
ENSORLG00000009837	tnrc6c1	100	67.286	ENSCSAG00000005167	TNRC6C	93	46.795	Chlorocebus_sabaeus
ENSORLG00000009837	tnrc6c1	71	64.407	ENSCHOG00000000088	TNRC6C	63	61.728	Choloepus_hoffmanni
ENSORLG00000009837	tnrc6c1	100	69.145	ENSCPBG00000027960	TNRC6C	100	48.076	Chrysemys_picta_bellii
ENSORLG00000009837	tnrc6c1	100	67.286	ENSCANG00000041771	TNRC6C	92	50.245	Colobus_angolensis_palliatus
ENSORLG00000009837	tnrc6c1	100	67.658	ENSCGRG00001022686	Tnrc6c	93	46.825	Cricetulus_griseus_chok1gshd
ENSORLG00000009837	tnrc6c1	100	68.030	ENSCGRG00000018041	Tnrc6c	93	47.190	Cricetulus_griseus_crigri
ENSORLG00000009837	tnrc6c1	100	80.292	ENSCSEG00000012744	tnrc6c1	95	73.690	Cynoglossus_semilaevis
ENSORLG00000009837	tnrc6c1	100	78.755	ENSDARG00000076847	tnrc6c1	99	57.252	Danio_rerio
ENSORLG00000009837	tnrc6c1	100	67.658	ENSDNOG00000003247	TNRC6C	95	47.917	Dasypus_novemcinctus
ENSORLG00000009837	tnrc6c1	100	67.286	ENSDORG00000004558	Tnrc6c	94	45.122	Dipodomys_ordii
ENSORLG00000009837	tnrc6c1	100	62.825	ENSETEG00000005527	TNRC6C	75	56.227	Echinops_telfairi
ENSORLG00000009837	tnrc6c1	100	68.401	ENSEASG00005004799	TNRC6C	91	50.462	Equus_asinus_asinus
ENSORLG00000009837	tnrc6c1	100	68.401	ENSECAG00000012486	TNRC6C	93	47.710	Equus_caballus
ENSORLG00000009837	tnrc6c1	100	52.788	ENSEEUG00000010008	TNRC6C	92	54.845	Erinaceus_europaeus
ENSORLG00000009837	tnrc6c1	100	66.914	ENSFCAG00000028358	TNRC6C	100	48.255	Felis_catus
ENSORLG00000009837	tnrc6c1	100	68.401	ENSFALG00000000848	TNRC6C	92	48.242	Ficedula_albicollis
ENSORLG00000009837	tnrc6c1	100	67.286	ENSFDAG00000010368	TNRC6C	99	47.786	Fukomys_damarensis
ENSORLG00000009837	tnrc6c1	100	84.672	ENSFHEG00000002936	tnrc6c1	100	75.688	Fundulus_heteroclitus
ENSORLG00000009837	tnrc6c1	100	70.149	ENSGALG00000001725	TNRC6C	100	49.301	Gallus_gallus
ENSORLG00000009837	tnrc6c1	100	84.420	ENSGAFG00000019019	tnrc6c1	100	79.415	Gambusia_affinis
ENSORLG00000009837	tnrc6c1	100	82.847	ENSGACG00000012320	tnrc6c1	92	69.761	Gasterosteus_aculeatus
ENSORLG00000009837	tnrc6c1	100	69.145	ENSGAGG00000022043	TNRC6C	100	48.945	Gopherus_agassizii
ENSORLG00000009837	tnrc6c1	100	67.286	ENSGGOG00000011304	TNRC6C	91	50.153	Gorilla_gorilla
ENSORLG00000009837	tnrc6c1	100	83.636	ENSHBUG00000010846	tnrc6c1	100	76.779	Haplochromis_burtoni
ENSORLG00000009837	tnrc6c1	100	67.658	ENSHGLG00000004809	TNRC6C	93	47.581	Heterocephalus_glaber_female
ENSORLG00000009837	tnrc6c1	100	65.428	ENSHGLG00100012597	TNRC6C	93	47.165	Heterocephalus_glaber_male
ENSORLG00000009837	tnrc6c1	100	77.206	ENSIPUG00000000818	tnrc6c1	94	59.163	Ictalurus_punctatus
ENSORLG00000009837	tnrc6c1	100	67.286	ENSSTOG00000009101	TNRC6C	99	47.838	Ictidomys_tridecemlineatus
ENSORLG00000009837	tnrc6c1	100	66.543	ENSJJAG00000017055	Tnrc6c	93	46.968	Jaculus_jaculus
ENSORLG00000009837	tnrc6c1	100	80.657	ENSKMAG00000021023	tnrc6c1	100	73.714	Kryptolebias_marmoratus
ENSORLG00000009837	tnrc6c1	100	82.836	ENSLBEG00000007870	-	95	76.389	Labrus_bergylta
ENSORLG00000009837	tnrc6c1	98	45.679	ENSLACG00000015283	TNRC6C	99	45.479	Latimeria_chalumnae
ENSORLG00000009837	tnrc6c1	100	76.384	ENSLOCG00000013377	tnrc6c1	89	75.477	Lepisosteus_oculatus
ENSORLG00000009837	tnrc6c1	100	67.658	ENSLAFG00000011122	TNRC6C	99	45.979	Loxodonta_africana
ENSORLG00000009837	tnrc6c1	100	67.286	ENSMFAG00000043943	TNRC6C	91	50.306	Macaca_fascicularis
ENSORLG00000009837	tnrc6c1	100	67.286	ENSMMUG00000011924	TNRC6C	91	50.306	Macaca_mulatta
ENSORLG00000009837	tnrc6c1	100	67.286	ENSMNEG00000030405	TNRC6C	91	50.245	Macaca_nemestrina
ENSORLG00000009837	tnrc6c1	100	67.286	ENSMLEG00000033436	TNRC6C	91	50.306	Mandrillus_leucophaeus
ENSORLG00000009837	tnrc6c1	100	86.131	ENSMAMG00000023613	tnrc6c1	100	77.307	Mastacembelus_armatus
ENSORLG00000009837	tnrc6c1	100	83.636	ENSMZEG00005010920	tnrc6c1	100	74.899	Maylandia_zebra
ENSORLG00000009837	tnrc6c1	100	65.441	ENSMGAG00000003906	TNRC6C	87	65.950	Meleagris_gallopavo
ENSORLG00000009837	tnrc6c1	100	67.658	ENSMAUG00000021618	Tnrc6c	91	49.634	Mesocricetus_auratus
ENSORLG00000009837	tnrc6c1	100	64.179	ENSMICG00000003952	TNRC6C	91	50.000	Microcebus_murinus
ENSORLG00000009837	tnrc6c1	100	67.286	ENSMOCG00000015879	Tnrc6c	99	47.627	Microtus_ochrogaster
ENSORLG00000009837	tnrc6c1	100	86.447	ENSMMOG00000005203	tnrc6c1	100	75.571	Mola_mola
ENSORLG00000009837	tnrc6c1	100	69.145	ENSMODG00000001785	TNRC6C	93	46.913	Monodelphis_domestica
ENSORLG00000009837	tnrc6c1	100	67.286	MGP_CAROLIEiJ_G0017465	Tnrc6c	99	47.323	Mus_caroli
ENSORLG00000009837	tnrc6c1	100	67.658	ENSMUSG00000025571	Tnrc6c	99	47.545	Mus_musculus
ENSORLG00000009837	tnrc6c1	100	67.286	MGP_PahariEiJ_G0018593	Tnrc6c	99	47.493	Mus_pahari
ENSORLG00000009837	tnrc6c1	100	67.286	MGP_SPRETEiJ_G0018309	Tnrc6c	99	47.437	Mus_spretus
ENSORLG00000009837	tnrc6c1	100	68.401	ENSMPUG00000013348	TNRC6C	92	46.567	Mustela_putorius_furo
ENSORLG00000009837	tnrc6c1	100	68.773	ENSMLUG00000014431	TNRC6C	92	45.987	Myotis_lucifugus
ENSORLG00000009837	tnrc6c1	100	67.286	ENSNGAG00000012203	Tnrc6c	93	46.934	Nannospalax_galili
ENSORLG00000009837	tnrc6c1	100	81.955	ENSNBRG00000005344	tnrc6c1	100	77.190	Neolamprologus_brichardi
ENSORLG00000009837	tnrc6c1	100	66.914	ENSNLEG00000000047	TNRC6C	93	44.716	Nomascus_leucogenys
ENSORLG00000009837	tnrc6c1	72	70.984	ENSMEUG00000005104	TNRC6C	96	64.223	Notamacropus_eugenii
ENSORLG00000009837	tnrc6c1	100	66.914	ENSODEG00000012499	TNRC6C	91	50.459	Octodon_degus
ENSORLG00000009837	tnrc6c1	100	86.081	ENSONIG00000002210	tnrc6c1	100	77.562	Oreochromis_niloticus
ENSORLG00000009837	tnrc6c1	100	96.053	ENSORLG00020016510	tnrc6c1	100	98.048	Oryzias_latipes_hni
ENSORLG00000009837	tnrc6c1	80	97.695	ENSORLG00015000171	tnrc6c1	99	97.755	Oryzias_latipes_hsok
ENSORLG00000009837	tnrc6c1	100	93.081	ENSOMEG00000000357	tnrc6c1	100	93.022	Oryzias_melastigma
ENSORLG00000009837	tnrc6c1	100	66.171	ENSOGAG00000007197	TNRC6C	92	47.750	Otolemur_garnettii
ENSORLG00000009837	tnrc6c1	68	75.138	ENSOARG00000006041	TNRC6C	91	45.455	Ovis_aries
ENSORLG00000009837	tnrc6c1	100	66.914	ENSPPAG00000027160	TNRC6C	91	50.337	Pan_paniscus
ENSORLG00000009837	tnrc6c1	100	66.914	ENSPPRG00000018881	TNRC6C	91	49.786	Panthera_pardus
ENSORLG00000009837	tnrc6c1	100	66.914	ENSPTRG00000009699	TNRC6C	91	50.399	Pan_troglodytes
ENSORLG00000009837	tnrc6c1	100	67.286	ENSPANG00000019994	TNRC6C	91	50.399	Papio_anubis
ENSORLG00000009837	tnrc6c1	99	60.294	ENSPKIG00000023304	-	99	61.314	Paramormyrops_kingsleyae
ENSORLG00000009837	tnrc6c1	99	76.208	ENSPKIG00000005428	tnrc6c1	100	54.352	Paramormyrops_kingsleyae
ENSORLG00000009837	tnrc6c1	100	68.773	ENSPSIG00000018069	TNRC6C	99	48.130	Pelodiscus_sinensis
ENSORLG00000009837	tnrc6c1	100	69.925	ENSPMGG00000022911	tnrc6c1	96	77.959	Periophthalmus_magnuspinnatus
ENSORLG00000009837	tnrc6c1	100	68.030	ENSPEMG00000009785	Tnrc6c	93	46.903	Peromyscus_maniculatus_bairdii
ENSORLG00000009837	tnrc6c1	51	38.330	ENSPCIG00000017421	-	85	38.322	Phascolarctos_cinereus
ENSORLG00000009837	tnrc6c1	100	84.116	ENSPFOG00000012560	tnrc6c1	92	78.802	Poecilia_formosa
ENSORLG00000009837	tnrc6c1	100	84.116	ENSPLAG00000021055	tnrc6c1	100	79.317	Poecilia_latipinna
ENSORLG00000009837	tnrc6c1	100	67.286	ENSPPYG00000008679	TNRC6C	92	46.924	Pongo_abelii
ENSORLG00000009837	tnrc6c1	100	66.543	ENSPCAG00000012510	TNRC6C	93	65.848	Procavia_capensis
ENSORLG00000009837	tnrc6c1	100	67.658	ENSPCOG00000021451	TNRC6C	91	49.969	Propithecus_coquereli
ENSORLG00000009837	tnrc6c1	70	71.930	ENSPVAG00000002008	TNRC6C	95	61.364	Pteropus_vampyrus
ENSORLG00000009837	tnrc6c1	100	83.636	ENSPNYG00000014477	tnrc6c1	100	76.573	Pundamilia_nyererei
ENSORLG00000009837	tnrc6c1	100	67.286	ENSRNOG00000022395	Tnrc6c	91	49.201	Rattus_norvegicus
ENSORLG00000009837	tnrc6c1	100	67.286	ENSRBIG00000027777	TNRC6C	91	50.245	Rhinopithecus_bieti
ENSORLG00000009837	tnrc6c1	100	67.286	ENSRROG00000042912	TNRC6C	91	50.245	Rhinopithecus_roxellana
ENSORLG00000009837	tnrc6c1	100	67.286	ENSSBOG00000023981	TNRC6C	92	49.162	Saimiri_boliviensis_boliviensis
ENSORLG00000009837	tnrc6c1	100	68.773	ENSSHAG00000018330	-	99	60.147	Sarcophilus_harrisii
ENSORLG00000009837	tnrc6c1	99	78.810	ENSSFOG00015006475	tnrc6c1	96	56.872	Scleropages_formosus
ENSORLG00000009837	tnrc6c1	99	64.103	ENSSFOG00015004735	-	99	65.736	Scleropages_formosus
ENSORLG00000009837	tnrc6c1	100	83.516	ENSSMAG00000012761	tnrc6c1	100	76.412	Scophthalmus_maximus
ENSORLG00000009837	tnrc6c1	100	87.179	ENSSDUG00000002366	tnrc6c1	98	79.859	Seriola_dumerili
ENSORLG00000009837	tnrc6c1	100	85.401	ENSSLDG00000025613	tnrc6c1	100	79.789	Seriola_lalandi_dorsalis
ENSORLG00000009837	tnrc6c1	70	64.912	ENSSARG00000006816	TNRC6C	91	62.140	Sorex_araneus
ENSORLG00000009837	tnrc6c1	100	70.632	ENSSPUG00000007341	TNRC6C	88	50.809	Sphenodon_punctatus
ENSORLG00000009837	tnrc6c1	98	79.800	ENSSPAG00000014977	tnrc6c1	98	80.413	Stegastes_partitus
ENSORLG00000009837	tnrc6c1	100	68.773	ENSSSCG00000034373	TNRC6C	91	50.184	Sus_scrofa
ENSORLG00000009837	tnrc6c1	100	68.401	ENSTGUG00000007733	TNRC6C	99	48.300	Taeniopygia_guttata
ENSORLG00000009837	tnrc6c1	100	80.220	ENSTRUG00000011685	tnrc6c1	99	72.919	Takifugu_rubripes
ENSORLG00000009837	tnrc6c1	100	78.909	ENSTNIG00000005273	tnrc6c1	100	71.649	Tetraodon_nigroviridis
ENSORLG00000009837	tnrc6c1	64	50.000	ENSTBEG00000005046	TNRC6C	100	48.793	Tupaia_belangeri
ENSORLG00000009837	tnrc6c1	100	68.773	ENSTTRG00000010828	TNRC6C	99	48.537	Tursiops_truncatus
ENSORLG00000009837	tnrc6c1	100	68.030	ENSUAMG00000021223	-	94	62.440	Ursus_americanus
ENSORLG00000009837	tnrc6c1	100	68.401	ENSUMAG00000013614	TNRC6C	92	47.480	Ursus_maritimus
ENSORLG00000009837	tnrc6c1	100	68.401	ENSVVUG00000015268	TNRC6C	100	49.385	Vulpes_vulpes
ENSORLG00000009837	tnrc6c1	100	67.658	ENSXETG00000019470	tnrc6c	99	48.011	Xenopus_tropicalis
ENSORLG00000009837	tnrc6c1	100	85.818	ENSXMAG00000025971	tnrc6c1	100	79.042	Xiphophorus_maculatus