EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000009999 (Gene tree)
Gene ID: 101163114
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 15517 bases
Position: chr18:22130719-22146235
Accession: 101163114
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000012548	RRM_1	PF00076.22	3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000012549	-	5651	XM_004079960	ENSORLP00000012548	307 (aa)	XP_004080008	H2M2A8

Gene Model

Click here to download ENSORLG00000009999's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000009999's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000009999	-	68	53.540	ENSORLG00000017934	-	75	53.571
ENSORLG00000009999	-	83	49.638	ENSORLG00000012719	-	89	50.370
ENSORLG00000009999	-	82	69.962	ENSORLG00000003144	-	78	72.243

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000009999	-	72	53.304	ENSG00000184672	RALYL	91	77.922	Homo_sapiens
ENSORLG00000009999	-	93	79.577	ENSAPOG00000006963	hnrnpc	100	78.896	Acanthochromis_polyacanthus
ENSORLG00000009999	-	83	70.656	ENSACIG00000016568	-	90	68.273	Amphilophus_citrinellus
ENSORLG00000009999	-	83	82.353	ENSACIG00000000270	-	99	78.571	Amphilophus_citrinellus
ENSORLG00000009999	-	93	79.225	ENSAOCG00000003896	-	100	78.571	Amphiprion_ocellaris
ENSORLG00000009999	-	82	71.373	ENSAOCG00000021616	-	78	74.118	Amphiprion_ocellaris
ENSORLG00000009999	-	93	79.225	ENSAPEG00000001489	-	100	78.571	Amphiprion_percula
ENSORLG00000009999	-	83	71.429	ENSAPEG00000019962	-	81	73.725	Amphiprion_percula
ENSORLG00000009999	-	85	70.896	ENSATEG00000018006	-	78	76.995	Anabas_testudineus
ENSORLG00000009999	-	100	79.935	ENSATEG00000011734	-	100	77.670	Anabas_testudineus
ENSORLG00000009999	-	84	44.912	ENSAPLG00000015574	RALYL	79	48.729	Anas_platyrhynchos
ENSORLG00000009999	-	72	48.333	ENSACAG00000028464	RALYL	78	49.153	Anolis_carolinensis
ENSORLG00000009999	-	86	48.529	ENSANAG00000023383	RALYL	78	52.915	Aotus_nancymaae
ENSORLG00000009999	-	93	68.621	ENSACLG00000005707	-	86	73.333	Astatotilapia_calliptera
ENSORLG00000009999	-	100	75.000	ENSACLG00000013636	-	92	75.974	Astatotilapia_calliptera
ENSORLG00000009999	-	100	75.325	ENSACLG00000000995	-	100	76.299	Astatotilapia_calliptera
ENSORLG00000009999	-	68	64.929	ENSAMXG00000042946	hnrnpc	97	67.876	Astyanax_mexicanus
ENSORLG00000009999	-	85	69.732	ENSAMXG00000034915	zgc:55733	86	70.000	Astyanax_mexicanus
ENSORLG00000009999	-	86	48.162	ENSCJAG00000000402	RALYL	78	52.466	Callithrix_jacchus
ENSORLG00000009999	-	72	48.536	ENSCPOG00000012314	RALYL	78	49.787	Cavia_porcellus
ENSORLG00000009999	-	86	48.897	ENSCCAG00000025003	RALYL	75	77.922	Cebus_capucinus
ENSORLG00000009999	-	72	53.304	ENSCATG00000042145	RALYL	78	52.466	Cercocebus_atys
ENSORLG00000009999	-	72	48.536	ENSCLAG00000005228	RALYL	78	49.787	Chinchilla_lanigera
ENSORLG00000009999	-	68	50.870	ENSCHOG00000013228	RALYL	74	47.639	Choloepus_hoffmanni
ENSORLG00000009999	-	72	53.304	ENSCANG00000039144	RALYL	78	52.466	Colobus_angolensis_palliatus
ENSORLG00000009999	-	72	49.583	ENSCGRG00001009241	Ralyl	78	50.000	Cricetulus_griseus_chok1gshd
ENSORLG00000009999	-	68	73.460	ENSCSEG00000019769	-	70	73.913	Cynoglossus_semilaevis
ENSORLG00000009999	-	78	68.465	ENSCSEG00000021349	-	78	67.843	Cynoglossus_semilaevis
ENSORLG00000009999	-	82	73.828	ENSCVAG00000016981	-	77	72.266	Cyprinodon_variegatus
ENSORLG00000009999	-	96	69.360	ENSCVAG00000002797	-	98	67.918	Cyprinodon_variegatus
ENSORLG00000009999	-	78	71.311	ENSDARG00000053810	hnrnpc	78	70.472	Danio_rerio
ENSORLG00000009999	-	85	69.732	ENSDARG00000103845	zgc:55733	90	70.000	Danio_rerio
ENSORLG00000009999	-	72	49.583	ENSDORG00000003721	Ralyl	78	50.000	Dipodomys_ordii
ENSORLG00000009999	-	53	53.409	ENSETEG00000014028	RALYL	80	57.862	Echinops_telfairi
ENSORLG00000009999	-	69	46.903	ENSEBUG00000012363	hnrnpc	65	46.753	Eptatretus_burgeri
ENSORLG00000009999	-	73	51.739	ENSEBUG00000006049	RALYL	89	47.266	Eptatretus_burgeri
ENSORLG00000009999	-	72	49.583	ENSEEUG00000007202	RALYL	80	51.064	Erinaceus_europaeus
ENSORLG00000009999	-	82	69.776	ENSELUG00000007714	-	88	70.498	Esox_lucius
ENSORLG00000009999	-	83	72.763	ENSELUG00000004132	-	87	72.201	Esox_lucius
ENSORLG00000009999	-	68	54.839	ENSFALG00000008647	RALYL	96	53.991	Ficedula_albicollis
ENSORLG00000009999	-	83	69.231	ENSFHEG00000007278	-	98	63.804	Fundulus_heteroclitus
ENSORLG00000009999	-	93	77.193	ENSFHEG00000003605	-	93	76.491	Fundulus_heteroclitus
ENSORLG00000009999	-	72	51.092	ENSGALG00000036938	RALYL	78	48.729	Gallus_gallus
ENSORLG00000009999	-	83	70.656	ENSGAFG00000020992	-	82	72.549	Gambusia_affinis
ENSORLG00000009999	-	100	75.974	ENSGAFG00000020486	-	100	76.948	Gambusia_affinis
ENSORLG00000009999	-	71	65.766	ENSGACG00000018932	-	85	66.509	Gasterosteus_aculeatus
ENSORLG00000009999	-	87	71.956	ENSGACG00000017772	-	96	74.603	Gasterosteus_aculeatus
ENSORLG00000009999	-	72	53.304	ENSGGOG00000000841	RALYL	78	52.466	Gorilla_gorilla
ENSORLG00000009999	-	100	75.649	ENSHBUG00000018342	-	100	76.623	Haplochromis_burtoni
ENSORLG00000009999	-	85	69.403	ENSHBUG00000010527	-	79	72.374	Haplochromis_burtoni
ENSORLG00000009999	-	72	48.117	ENSHGLG00000004866	RALYL	78	49.362	Heterocephalus_glaber_female
ENSORLG00000009999	-	72	48.117	ENSHGLG00100017480	RALYL	78	49.362	Heterocephalus_glaber_male
ENSORLG00000009999	-	84	68.132	ENSHCOG00000012333	hnrnpc	86	68.539	Hippocampus_comes
ENSORLG00000009999	-	85	70.881	ENSIPUG00000008666	zgc:55733	92	75.234	Ictalurus_punctatus
ENSORLG00000009999	-	83	69.531	ENSIPUG00000011271	hnrnpc	97	71.239	Ictalurus_punctatus
ENSORLG00000009999	-	72	49.167	ENSSTOG00000012583	RALYL	80	49.576	Ictidomys_tridecemlineatus
ENSORLG00000009999	-	92	79.078	ENSKMAG00000011170	-	91	78.169	Kryptolebias_marmoratus
ENSORLG00000009999	-	82	69.804	ENSKMAG00000018265	-	78	72.941	Kryptolebias_marmoratus
ENSORLG00000009999	-	89	70.714	ENSLBEG00000024418	-	84	71.765	Labrus_bergylta
ENSORLG00000009999	-	87	74.532	ENSLBEG00000006979	-	85	74.899	Labrus_bergylta
ENSORLG00000009999	-	85	70.455	ENSLBEG00000006193	-	79	72.941	Labrus_bergylta
ENSORLG00000009999	-	83	61.069	ENSLOCG00000002560	hnrnpc	93	62.681	Lepisosteus_oculatus
ENSORLG00000009999	-	72	53.304	ENSMNEG00000033288	RALYL	78	52.466	Macaca_nemestrina
ENSORLG00000009999	-	72	53.304	ENSMLEG00000038284	RALYL	78	52.466	Mandrillus_leucophaeus
ENSORLG00000009999	-	85	70.522	ENSMAMG00000008033	-	88	73.152	Mastacembelus_armatus
ENSORLG00000009999	-	82	81.275	ENSMAMG00000012236	-	92	78.947	Mastacembelus_armatus
ENSORLG00000009999	-	92	68.772	ENSMZEG00005024249	-	80	73.333	Maylandia_zebra
ENSORLG00000009999	-	100	75.325	ENSMZEG00005020460	-	100	76.299	Maylandia_zebra
ENSORLG00000009999	-	72	49.583	ENSMAUG00000015149	Ralyl	78	50.000	Mesocricetus_auratus
ENSORLG00000009999	-	72	51.754	ENSMICG00000005558	RALYL	78	76.623	Microcebus_murinus
ENSORLG00000009999	-	72	49.583	ENSMOCG00000017371	Ralyl	78	50.000	Microtus_ochrogaster
ENSORLG00000009999	-	81	75.299	ENSMMOG00000019520	-	84	75.197	Mola_mola
ENSORLG00000009999	-	86	75.379	ENSMMOG00000021465	-	88	78.175	Mola_mola
ENSORLG00000009999	-	85	72.348	ENSMALG00000014623	-	79	72.157	Monopterus_albus
ENSORLG00000009999	-	96	68.475	ENSMALG00000007520	-	98	69.416	Monopterus_albus
ENSORLG00000009999	-	72	49.167	ENSMUSG00000039717	Ralyl	91	76.623	Mus_musculus
ENSORLG00000009999	-	72	50.000	ENSMPUG00000010724	RALYL	78	48.729	Mustela_putorius_furo
ENSORLG00000009999	-	72	49.583	ENSNGAG00000013375	Ralyl	78	50.000	Nannospalax_galili
ENSORLG00000009999	-	97	77.667	ENSNBRG00000004912	-	97	76.610	Neolamprologus_brichardi
ENSORLG00000009999	-	85	69.403	ENSNBRG00000015676	-	79	72.374	Neolamprologus_brichardi
ENSORLG00000009999	-	72	53.304	ENSNLEG00000002702	RALYL	74	52.466	Nomascus_leucogenys
ENSORLG00000009999	-	58	46.970	ENSOPRG00000013650	-	98	44.059	Ochotona_princeps
ENSORLG00000009999	-	72	49.791	ENSODEG00000001012	RALYL	78	50.213	Octodon_degus
ENSORLG00000009999	-	85	69.403	ENSONIG00000018350	-	79	72.374	Oreochromis_niloticus
ENSORLG00000009999	-	86	79.245	ENSONIG00000007859	-	94	77.899	Oreochromis_niloticus
ENSORLG00000009999	-	100	99.674	ENSORLG00020018228	hnrnpc	100	99.674	Oryzias_latipes_hni
ENSORLG00000009999	-	100	100.000	ENSORLG00015019755	-	100	100.000	Oryzias_latipes_hsok
ENSORLG00000009999	-	82	69.962	ENSORLG00015009460	-	78	72.243	Oryzias_latipes_hsok
ENSORLG00000009999	-	82	71.875	ENSOMEG00000022665	-	79	74.219	Oryzias_melastigma
ENSORLG00000009999	-	100	97.403	ENSOMEG00000020488	-	100	97.403	Oryzias_melastigma
ENSORLG00000009999	-	72	53.304	ENSPPAG00000038705	RALYL	78	52.466	Pan_paniscus
ENSORLG00000009999	-	72	52.838	ENSPPRG00000018612	RALYL	78	51.556	Panthera_pardus
ENSORLG00000009999	-	72	52.838	ENSPTIG00000020331	RALYL	78	51.556	Panthera_tigris_altaica
ENSORLG00000009999	-	72	53.304	ENSPTRG00000020381	RALYL	78	52.466	Pan_troglodytes
ENSORLG00000009999	-	72	53.304	ENSPANG00000029305	RALYL	78	52.466	Papio_anubis
ENSORLG00000009999	-	91	68.166	ENSPKIG00000008592	-	87	69.534	Paramormyrops_kingsleyae
ENSORLG00000009999	-	87	69.343	ENSPKIG00000022837	-	81	72.973	Paramormyrops_kingsleyae
ENSORLG00000009999	-	72	48.333	ENSPSIG00000011135	RALYL	78	48.729	Pelodiscus_sinensis
ENSORLG00000009999	-	67	74.272	ENSPMGG00000017774	-	86	65.700	Periophthalmus_magnuspinnatus
ENSORLG00000009999	-	70	78.704	ENSPMGG00000013144	-	80	77.358	Periophthalmus_magnuspinnatus
ENSORLG00000009999	-	72	49.583	ENSPEMG00000016447	Ralyl	78	50.000	Peromyscus_maniculatus_bairdii
ENSORLG00000009999	-	68	53.247	ENSPMAG00000002407	RALYL	96	53.778	Petromyzon_marinus
ENSORLG00000009999	-	95	62.136	ENSPFOG00000002643	-	80	71.815	Poecilia_formosa
ENSORLG00000009999	-	100	76.052	ENSPFOG00000001583	-	100	76.699	Poecilia_formosa
ENSORLG00000009999	-	82	70.980	ENSPLAG00000000061	-	78	72.941	Poecilia_latipinna
ENSORLG00000009999	-	100	75.649	ENSPLAG00000015305	-	100	76.299	Poecilia_latipinna
ENSORLG00000009999	-	82	70.980	ENSPMEG00000016524	-	78	72.549	Poecilia_mexicana
ENSORLG00000009999	-	100	76.299	ENSPMEG00000004802	-	100	76.623	Poecilia_mexicana
ENSORLG00000009999	-	82	71.373	ENSPREG00000001852	-	84	73.333	Poecilia_reticulata
ENSORLG00000009999	-	93	78.596	ENSPREG00000007928	-	93	78.246	Poecilia_reticulata
ENSORLG00000009999	-	72	49.372	ENSPVAG00000010821	RALYL	78	50.213	Pteropus_vampyrus
ENSORLG00000009999	-	83	78.599	ENSPNYG00000020293	-	86	78.968	Pundamilia_nyererei
ENSORLG00000009999	-	93	68.621	ENSPNYG00000003747	-	85	72.374	Pundamilia_nyererei
ENSORLG00000009999	-	86	67.273	ENSPNAG00000019200	zgc:55733	81	69.231	Pygocentrus_nattereri
ENSORLG00000009999	-	77	70.464	ENSPNAG00000015686	hnrnpc	84	70.751	Pygocentrus_nattereri
ENSORLG00000009999	-	72	53.304	ENSRROG00000023925	RALYL	80	75.949	Rhinopithecus_roxellana
ENSORLG00000009999	-	83	69.318	ENSSFOG00015012924	-	78	88.312	Scleropages_formosus
ENSORLG00000009999	-	83	66.412	ENSSFOG00015012015	-	82	74.299	Scleropages_formosus
ENSORLG00000009999	-	96	59.933	ENSSMAG00000011147	-	78	74.766	Scophthalmus_maximus
ENSORLG00000009999	-	87	78.571	ENSSMAG00000013592	-	84	78.195	Scophthalmus_maximus
ENSORLG00000009999	-	100	79.221	ENSSDUG00000001723	-	100	78.896	Seriola_dumerili
ENSORLG00000009999	-	85	73.585	ENSSDUG00000006730	-	80	72.835	Seriola_dumerili
ENSORLG00000009999	-	85	73.585	ENSSLDG00000007474	-	87	74.118	Seriola_lalandi_dorsalis
ENSORLG00000009999	-	91	79.928	ENSSLDG00000007454	-	87	80.451	Seriola_lalandi_dorsalis
ENSORLG00000009999	-	85	71.429	ENSSPAG00000013996	-	79	74.118	Stegastes_partitus
ENSORLG00000009999	-	91	81.071	ENSSPAG00000023204	-	100	79.870	Stegastes_partitus
ENSORLG00000009999	-	71	48.936	ENSTGUG00000011689	RALYL	78	49.351	Taeniopygia_guttata
ENSORLG00000009999	-	83	76.471	ENSTRUG00000020158	-	82	74.900	Takifugu_rubripes
ENSORLG00000009999	-	83	72.414	ENSTNIG00000007427	-	83	71.984	Tetraodon_nigroviridis
ENSORLG00000009999	-	93	65.972	ENSTNIG00000000334	-	93	68.504	Tetraodon_nigroviridis
ENSORLG00000009999	-	71	44.872	ENSTBEG00000005551	RALYL	88	45.415	Tupaia_belangeri
ENSORLG00000009999	-	72	49.362	ENSTTRG00000015762	RALYL	78	50.213	Tursiops_truncatus
ENSORLG00000009999	-	72	46.781	ENSVPAG00000008501	RALYL	78	47.162	Vicugna_pacos
ENSORLG00000009999	-	89	73.455	ENSXCOG00000006552	-	81	73.123	Xiphophorus_couchianus
ENSORLG00000009999	-	51	78.788	ENSXCOG00000019434	-	91	65.899	Xiphophorus_couchianus
ENSORLG00000009999	-	82	70.196	ENSXMAG00000022849	-	82	72.157	Xiphophorus_maculatus
ENSORLG00000009999	-	100	76.623	ENSXMAG00000009333	-	100	76.948	Xiphophorus_maculatus