EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000010025 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 6426 bases
Position: chr11:20514970-20521395
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000025959	zf-C2H2	PF00096.26	5.9e-17	1	3
ENSORLP00000025959	zf-C2H2	PF00096.26	5.9e-17	2	3
ENSORLP00000025959	zf-C2H2	PF00096.26	5.9e-17	3	3
ENSORLP00000025959	zf-met	PF12874.7	9.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000031901	-	1821	-	ENSORLP00000025959	606 (aa)	-	-
ENSORLT00000012577	-	1305	-	ENSORLP00000012576	435 (aa)	-	H2M2D4

Gene Model

Click here to download ENSORLG00000010025's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000010025's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000010025	prdm1b	66	72.087	ENSAPOG00000022084	prdm1b	84	76.093	Acanthochromis_polyacanthus
ENSORLG00000010025	prdm1b	97	68.618	ENSACIG00000014426	prdm1b	97	68.395	Amphilophus_citrinellus
ENSORLG00000010025	prdm1b	97	68.634	ENSAOCG00000002230	prdm1b	98	68.465	Amphiprion_ocellaris
ENSORLG00000010025	prdm1b	99	67.961	ENSAPEG00000019826	prdm1b	99	68.679	Amphiprion_percula
ENSORLG00000010025	prdm1b	99	67.395	ENSATEG00000006924	prdm1b	99	68.019	Anabas_testudineus
ENSORLG00000010025	prdm1b	72	49.515	ENSATEG00000021017	prdm1a	56	61.194	Anabas_testudineus
ENSORLG00000010025	prdm1b	95	71.477	ENSACLG00000005487	prdm1b	89	71.644	Astatotilapia_calliptera
ENSORLG00000010025	prdm1b	66	61.194	ENSCSEG00000009707	prdm1a	57	61.194	Cynoglossus_semilaevis
ENSORLG00000010025	prdm1b	65	61.194	ENSCVAG00000019081	prdm1a	58	61.194	Cyprinodon_variegatus
ENSORLG00000010025	prdm1b	99	65.397	ENSCVAG00000016746	prdm1b	98	66.139	Cyprinodon_variegatus
ENSORLG00000010025	prdm1b	99	68.521	ENSFHEG00000019848	prdm1b	99	68.504	Fundulus_heteroclitus
ENSORLG00000010025	prdm1b	96	69.218	ENSGAFG00000016191	prdm1b	93	69.295	Gambusia_affinis
ENSORLG00000010025	prdm1b	93	64.860	ENSGACG00000002716	prdm1b	85	64.860	Gasterosteus_aculeatus
ENSORLG00000010025	prdm1b	95	71.309	ENSHBUG00000001475	prdm1b	95	71.477	Haplochromis_burtoni
ENSORLG00000010025	prdm1b	99	65.463	ENSHCOG00000003617	prdm1b	99	65.463	Hippocampus_comes
ENSORLG00000010025	prdm1b	99	48.095	ENSIPUG00000013740	prdm1b	98	48.065	Ictalurus_punctatus
ENSORLG00000010025	prdm1b	90	37.997	ENSKMAG00000016247	-	74	37.361	Kryptolebias_marmoratus
ENSORLG00000010025	prdm1b	66	61.194	ENSKMAG00000017597	prdm1a	60	61.194	Kryptolebias_marmoratus
ENSORLG00000010025	prdm1b	93	68.586	ENSKMAG00000011218	prdm1b	90	68.063	Kryptolebias_marmoratus
ENSORLG00000010025	prdm1b	99	68.789	ENSLBEG00000020955	prdm1b	99	68.315	Labrus_bergylta
ENSORLG00000010025	prdm1b	78	72.059	ENSLOCG00000004978	prdm1b	64	72.059	Lepisosteus_oculatus
ENSORLG00000010025	prdm1b	99	68.809	ENSMZEG00005026361	prdm1b	94	68.966	Maylandia_zebra
ENSORLG00000010025	prdm1b	95	70.202	ENSMMOG00000013458	prdm1b	95	70.034	Mola_mola
ENSORLG00000010025	prdm1b	97	64.952	ENSMALG00000011410	prdm1b	98	65.273	Monopterus_albus
ENSORLG00000010025	prdm1b	92	64.331	ENSONIG00000013583	prdm1b	86	64.490	Oreochromis_niloticus
ENSORLG00000010025	prdm1b	93	97.711	ENSORLG00015009022	prdm1b	92	97.711	Oryzias_latipes_hsok
ENSORLG00000010025	prdm1b	78	72.464	ENSPKIG00000022335	prdm1b	74	72.464	Paramormyrops_kingsleyae
ENSORLG00000010025	prdm1b	88	63.993	ENSPFOG00000003103	prdm1b	84	63.102	Poecilia_formosa
ENSORLG00000010025	prdm1b	99	67.347	ENSPLAG00000018491	prdm1b	99	67.190	Poecilia_latipinna
ENSORLG00000010025	prdm1b	99	67.818	ENSPMEG00000007869	prdm1b	99	67.930	Poecilia_mexicana
ENSORLG00000010025	prdm1b	99	67.981	ENSPREG00000011327	prdm1b	98	67.712	Poecilia_reticulata
ENSORLG00000010025	prdm1b	69	64.179	ENSPVAG00000011732	PRDM1	58	64.179	Pteropus_vampyrus
ENSORLG00000010025	prdm1b	68	60.294	ENSPNAG00000028442	prdm1a	56	60.294	Pygocentrus_nattereri
ENSORLG00000010025	prdm1b	92	58.232	ENSSFOG00015021896	prdm1b	77	58.059	Scleropages_formosus
ENSORLG00000010025	prdm1b	99	67.601	ENSSMAG00000020467	prdm1b	100	67.628	Scophthalmus_maximus
ENSORLG00000010025	prdm1b	99	69.315	ENSSDUG00000020610	prdm1b	99	69.470	Seriola_dumerili
ENSORLG00000010025	prdm1b	99	68.847	ENSSLDG00000021973	prdm1b	95	70.364	Seriola_lalandi_dorsalis
ENSORLG00000010025	prdm1b	99	70.016	ENSSPAG00000000803	prdm1b	99	70.541	Stegastes_partitus
ENSORLG00000010025	prdm1b	96	70.370	ENSXCOG00000018920	prdm1b	82	70.370	Xiphophorus_couchianus
ENSORLG00000010025	prdm1b	98	67.769	ENSXMAG00000016765	prdm1b	96	67.769	Xiphophorus_maculatus