EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000010027 (Gene tree)
Gene ID: 101163779
Gene Symbol: srp54
Alias: -
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 5544 bases
Position: chr22:2279472-2285015
Accession: 101163779
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000012578	SRP54	PF00448.22	1.4e-77	1	1
ENSORLP00000012578	SRP54_N	PF02881.19	5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000012579	-	1612	XM_023951667	ENSORLP00000012578	504 (aa)	XP_023807435	H2M2D6

Gene Model

Click here to download ENSORLG00000010027's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000010027's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000010027	srp54	100	95.833	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSORLG00000010027	srp54	100	99.405	ENSAPOG00000011314	srp54	100	99.405	Acanthochromis_polyacanthus
ENSORLG00000010027	srp54	100	95.833	ENSAMEG00000015544	SRP54	100	95.833	Ailuropoda_melanoleuca
ENSORLG00000010027	srp54	89	98.441	ENSACIG00000022831	srp54	97	98.441	Amphilophus_citrinellus
ENSORLG00000010027	srp54	100	99.405	ENSAOCG00000019401	srp54	100	99.405	Amphiprion_ocellaris
ENSORLG00000010027	srp54	100	99.405	ENSAPEG00000001977	srp54	100	99.405	Amphiprion_percula
ENSORLG00000010027	srp54	100	99.603	ENSATEG00000013877	srp54	100	99.603	Anabas_testudineus
ENSORLG00000010027	srp54	94	95.148	ENSAPLG00000010125	SRP54	95	95.148	Anas_platyrhynchos
ENSORLG00000010027	srp54	86	92.396	ENSACAG00000010631	-	100	92.396	Anolis_carolinensis
ENSORLG00000010027	srp54	100	95.238	ENSACAG00000002103	-	100	95.238	Anolis_carolinensis
ENSORLG00000010027	srp54	65	79.456	ENSACAG00000001124	-	100	79.456	Anolis_carolinensis
ENSORLG00000010027	srp54	100	95.833	ENSANAG00000022133	SRP54	100	95.833	Aotus_nancymaae
ENSORLG00000010027	srp54	100	99.802	ENSACLG00000015866	srp54	100	99.802	Astatotilapia_calliptera
ENSORLG00000010027	srp54	100	98.016	ENSAMXG00000032669	SRP54	100	98.016	Astyanax_mexicanus
ENSORLG00000010027	srp54	100	95.833	ENSBTAG00000019085	SRP54	100	95.833	Bos_taurus
ENSORLG00000010027	srp54	98	72.691	WBGene00009012	F21D5.7	100	72.691	Caenorhabditis_elegans
ENSORLG00000010027	srp54	100	95.833	ENSCJAG00000006581	SRP54	100	95.833	Callithrix_jacchus
ENSORLG00000010027	srp54	100	95.833	ENSCAFG00000013331	SRP54	100	95.833	Canis_familiaris
ENSORLG00000010027	srp54	100	95.833	ENSCAFG00020023427	SRP54	100	95.833	Canis_lupus_dingo
ENSORLG00000010027	srp54	100	95.833	ENSCHIG00000026345	SRP54	100	95.833	Capra_hircus
ENSORLG00000010027	srp54	100	95.635	ENSTSYG00000002680	-	100	95.635	Carlito_syrichta
ENSORLG00000010027	srp54	94	84.211	ENSTSYG00000035333	-	93	84.211	Carlito_syrichta
ENSORLG00000010027	srp54	94	61.633	ENSCAPG00000008780	SRP54	100	61.633	Cavia_aperea
ENSORLG00000010027	srp54	100	95.437	ENSCPOG00000003691	SRP54	100	95.437	Cavia_porcellus
ENSORLG00000010027	srp54	90	95.476	ENSCCAG00000024179	SRP54	100	95.704	Cebus_capucinus
ENSORLG00000010027	srp54	100	95.833	ENSCATG00000034083	SRP54	100	95.833	Cercocebus_atys
ENSORLG00000010027	srp54	100	95.833	ENSCLAG00000015076	SRP54	100	95.833	Chinchilla_lanigera
ENSORLG00000010027	srp54	100	95.833	ENSCSAG00000015575	SRP54	100	95.833	Chlorocebus_sabaeus
ENSORLG00000010027	srp54	95	84.615	ENSCHOG00000008986	SRP54	100	84.615	Choloepus_hoffmanni
ENSORLG00000010027	srp54	100	95.833	ENSCPBG00000026195	SRP54	100	95.833	Chrysemys_picta_bellii
ENSORLG00000010027	srp54	100	82.738	ENSCING00000007380	-	100	82.738	Ciona_intestinalis
ENSORLG00000010027	srp54	100	95.833	ENSCANG00000028532	SRP54	100	95.833	Colobus_angolensis_palliatus
ENSORLG00000010027	srp54	100	95.833	ENSCGRG00001009525	-	100	95.833	Cricetulus_griseus_chok1gshd
ENSORLG00000010027	srp54	76	96.104	ENSCGRG00000009453	-	89	96.104	Cricetulus_griseus_crigri
ENSORLG00000010027	srp54	100	98.611	ENSCSEG00000012392	srp54	100	98.611	Cynoglossus_semilaevis
ENSORLG00000010027	srp54	100	99.008	ENSCVAG00000010395	srp54	100	99.008	Cyprinodon_variegatus
ENSORLG00000010027	srp54	100	98.413	ENSDARG00000098367	srp54	100	98.413	Danio_rerio
ENSORLG00000010027	srp54	100	95.833	ENSDNOG00000032525	SRP54	100	95.833	Dasypus_novemcinctus
ENSORLG00000010027	srp54	89	80.531	ENSDORG00000005159	-	98	80.531	Dipodomys_ordii
ENSORLG00000010027	srp54	96	79.175	FBgn0010747	Srp54k	98	78.715	Drosophila_melanogaster
ENSORLG00000010027	srp54	100	94.643	ENSETEG00000016307	-	100	94.643	Echinops_telfairi
ENSORLG00000010027	srp54	83	55.981	ENSETEG00000012102	-	99	55.981	Echinops_telfairi
ENSORLG00000010027	srp54	100	88.492	ENSEBUG00000009437	-	100	88.492	Eptatretus_burgeri
ENSORLG00000010027	srp54	100	95.833	ENSEASG00005002057	SRP54	100	95.833	Equus_asinus_asinus
ENSORLG00000010027	srp54	99	95.582	ENSECAG00000018042	SRP54	98	95.582	Equus_caballus
ENSORLG00000010027	srp54	100	80.159	ENSEEUG00000001511	SRP54	100	80.159	Erinaceus_europaeus
ENSORLG00000010027	srp54	100	97.619	ENSELUG00000003395	srp54	100	97.619	Esox_lucius
ENSORLG00000010027	srp54	100	95.635	ENSFCAG00000032033	SRP54	100	95.635	Felis_catus
ENSORLG00000010027	srp54	100	95.437	ENSFALG00000005995	SRP54	100	95.437	Ficedula_albicollis
ENSORLG00000010027	srp54	100	95.833	ENSFDAG00000016767	SRP54	100	95.833	Fukomys_damarensis
ENSORLG00000010027	srp54	100	99.405	ENSFHEG00000004263	srp54	100	99.405	Fundulus_heteroclitus
ENSORLG00000010027	srp54	95	92.259	ENSGMOG00000011391	srp54	100	92.259	Gadus_morhua
ENSORLG00000010027	srp54	100	95.437	ENSGALG00000023135	SRP54	100	95.437	Gallus_gallus
ENSORLG00000010027	srp54	100	99.206	ENSGAFG00000011586	srp54	100	99.206	Gambusia_affinis
ENSORLG00000010027	srp54	100	99.008	ENSGACG00000004181	srp54	100	99.008	Gasterosteus_aculeatus
ENSORLG00000010027	srp54	100	95.833	ENSGAGG00000014766	SRP54	100	95.833	Gopherus_agassizii
ENSORLG00000010027	srp54	100	95.833	ENSGGOG00000002926	SRP54	100	95.833	Gorilla_gorilla
ENSORLG00000010027	srp54	100	99.802	ENSHBUG00000005678	srp54	100	99.802	Haplochromis_burtoni
ENSORLG00000010027	srp54	100	95.833	ENSHGLG00000002850	SRP54	100	95.833	Heterocephalus_glaber_female
ENSORLG00000010027	srp54	100	66.931	ENSHGLG00100007281	-	100	66.931	Heterocephalus_glaber_male
ENSORLG00000010027	srp54	100	95.833	ENSHGLG00100005263	SRP54	100	95.833	Heterocephalus_glaber_male
ENSORLG00000010027	srp54	100	97.619	ENSHCOG00000021127	srp54	100	97.619	Hippocampus_comes
ENSORLG00000010027	srp54	100	97.619	ENSIPUG00000001420	srp54	100	97.619	Ictalurus_punctatus
ENSORLG00000010027	srp54	100	95.833	ENSSTOG00000016023	SRP54	100	95.833	Ictidomys_tridecemlineatus
ENSORLG00000010027	srp54	87	74.318	ENSJJAG00000016404	-	100	74.318	Jaculus_jaculus
ENSORLG00000010027	srp54	100	91.071	ENSJJAG00000013417	-	100	91.071	Jaculus_jaculus
ENSORLG00000010027	srp54	100	98.611	ENSKMAG00000007707	srp54	100	98.611	Kryptolebias_marmoratus
ENSORLG00000010027	srp54	100	99.603	ENSLBEG00000021122	srp54	100	99.603	Labrus_bergylta
ENSORLG00000010027	srp54	100	99.603	ENSLBEG00000018690	srp54	100	99.603	Labrus_bergylta
ENSORLG00000010027	srp54	100	95.833	ENSLACG00000017890	SRP54	100	95.833	Latimeria_chalumnae
ENSORLG00000010027	srp54	100	98.016	ENSLOCG00000009440	srp54	100	98.016	Lepisosteus_oculatus
ENSORLG00000010027	srp54	100	95.833	ENSLAFG00000012007	SRP54	100	95.833	Loxodonta_africana
ENSORLG00000010027	srp54	100	95.833	ENSMFAG00000044371	SRP54	100	95.833	Macaca_fascicularis
ENSORLG00000010027	srp54	100	95.833	ENSMMUG00000015073	FAM177A1	100	95.833	Macaca_mulatta
ENSORLG00000010027	srp54	100	95.833	ENSMNEG00000006947	SRP54	100	95.833	Macaca_nemestrina
ENSORLG00000010027	srp54	100	95.833	ENSMLEG00000042251	SRP54	100	95.833	Mandrillus_leucophaeus
ENSORLG00000010027	srp54	100	99.802	ENSMAMG00000004803	srp54	100	99.802	Mastacembelus_armatus
ENSORLG00000010027	srp54	100	99.802	ENSMZEG00005027528	srp54	100	99.802	Maylandia_zebra
ENSORLG00000010027	srp54	100	91.107	ENSMGAG00000012481	SRP54	100	91.107	Meleagris_gallopavo
ENSORLG00000010027	srp54	100	96.032	ENSMAUG00000014447	-	100	96.032	Mesocricetus_auratus
ENSORLG00000010027	srp54	100	95.833	ENSMICG00000010270	SRP54	100	95.833	Microcebus_murinus
ENSORLG00000010027	srp54	87	95.909	ENSMOCG00000000948	-	100	95.909	Microtus_ochrogaster
ENSORLG00000010027	srp54	90	96.696	ENSMMOG00000020303	srp54	99	96.696	Mola_mola
ENSORLG00000010027	srp54	100	95.833	ENSMODG00000012925	-	100	95.833	Monodelphis_domestica
ENSORLG00000010027	srp54	100	95.833	ENSMODG00000023150	-	100	95.833	Monodelphis_domestica
ENSORLG00000010027	srp54	88	99.323	ENSMALG00000009163	srp54	98	99.323	Monopterus_albus
ENSORLG00000010027	srp54	100	96.032	MGP_CAROLIEiJ_G0017754	-	100	96.032	Mus_caroli
ENSORLG00000010027	srp54	100	96.032	ENSMUSG00000073079	Srp54a	100	96.364	Mus_musculus
ENSORLG00000010027	srp54	100	96.032	ENSMUSG00000112449	Srp54b	100	96.032	Mus_musculus
ENSORLG00000010027	srp54	100	95.238	ENSMUSG00000079108	Srp54c	100	95.238	Mus_musculus
ENSORLG00000010027	srp54	100	96.032	MGP_PahariEiJ_G0029510	-	100	96.032	Mus_pahari
ENSORLG00000010027	srp54	100	95.833	ENSMPUG00000016302	SRP54	100	95.833	Mustela_putorius_furo
ENSORLG00000010027	srp54	100	95.238	ENSMLUG00000008958	SRP54	100	95.238	Myotis_lucifugus
ENSORLG00000010027	srp54	100	86.508	ENSNGAG00000019806	-	100	86.508	Nannospalax_galili
ENSORLG00000010027	srp54	87	100.000	ENSNBRG00000006000	srp54	100	100.000	Neolamprologus_brichardi
ENSORLG00000010027	srp54	100	95.833	ENSNLEG00000003496	SRP54	100	95.833	Nomascus_leucogenys
ENSORLG00000010027	srp54	67	98.214	ENSMEUG00000000138	-	76	98.214	Notamacropus_eugenii
ENSORLG00000010027	srp54	58	96.721	ENSOPRG00000014502	-	60	96.721	Ochotona_princeps
ENSORLG00000010027	srp54	100	95.833	ENSODEG00000004865	SRP54	100	95.833	Octodon_degus
ENSORLG00000010027	srp54	100	99.802	ENSONIG00000011768	srp54	100	99.802	Oreochromis_niloticus
ENSORLG00000010027	srp54	100	95.833	ENSOANG00000014051	SRP54	100	95.833	Ornithorhynchus_anatinus
ENSORLG00000010027	srp54	100	95.238	ENSOCUG00000007838	SRP54	100	95.238	Oryctolagus_cuniculus
ENSORLG00000010027	srp54	100	100.000	ENSORLG00020001878	srp54	100	100.000	Oryzias_latipes_hni
ENSORLG00000010027	srp54	100	100.000	ENSORLG00015021866	srp54	100	100.000	Oryzias_latipes_hsok
ENSORLG00000010027	srp54	100	99.802	ENSOMEG00000020952	srp54	100	99.802	Oryzias_melastigma
ENSORLG00000010027	srp54	100	95.833	ENSOGAG00000012188	SRP54	100	95.833	Otolemur_garnettii
ENSORLG00000010027	srp54	100	95.833	ENSOARG00000007160	SRP54	100	95.833	Ovis_aries
ENSORLG00000010027	srp54	100	95.833	ENSPPAG00000017434	SRP54	100	95.833	Pan_paniscus
ENSORLG00000010027	srp54	100	94.841	ENSPPRG00000014047	SRP54	100	94.841	Panthera_pardus
ENSORLG00000010027	srp54	100	95.635	ENSPTIG00000000744	SRP54	96	95.635	Panthera_tigris_altaica
ENSORLG00000010027	srp54	100	95.833	ENSPTRG00000006259	FAM177A1	100	95.833	Pan_troglodytes
ENSORLG00000010027	srp54	100	95.833	ENSPANG00000023853	SRP54	100	95.833	Papio_anubis
ENSORLG00000010027	srp54	100	97.817	ENSPKIG00000001953	srp54	100	97.817	Paramormyrops_kingsleyae
ENSORLG00000010027	srp54	100	95.635	ENSPSIG00000006476	SRP54	100	95.635	Pelodiscus_sinensis
ENSORLG00000010027	srp54	91	95.870	ENSPMGG00000004127	srp54	99	95.870	Periophthalmus_magnuspinnatus
ENSORLG00000010027	srp54	100	83.929	ENSPEMG00000019634	-	100	83.929	Peromyscus_maniculatus_bairdii
ENSORLG00000010027	srp54	100	89.881	ENSPMAG00000006078	-	100	89.881	Petromyzon_marinus
ENSORLG00000010027	srp54	100	95.833	ENSPCIG00000016175	SRP54	100	95.833	Phascolarctos_cinereus
ENSORLG00000010027	srp54	100	99.206	ENSPFOG00000008870	srp54	100	99.206	Poecilia_formosa
ENSORLG00000010027	srp54	100	99.206	ENSPLAG00000009889	srp54	100	99.206	Poecilia_latipinna
ENSORLG00000010027	srp54	100	99.206	ENSPMEG00000008601	srp54	100	99.206	Poecilia_mexicana
ENSORLG00000010027	srp54	100	99.206	ENSPREG00000004505	srp54	100	99.206	Poecilia_reticulata
ENSORLG00000010027	srp54	100	91.071	ENSPPYG00000005739	SRP54	100	91.071	Pongo_abelii
ENSORLG00000010027	srp54	100	92.063	ENSPCAG00000006268	SRP54	100	92.063	Procavia_capensis
ENSORLG00000010027	srp54	100	93.861	ENSPCOG00000022473	SRP54	100	93.861	Propithecus_coquereli
ENSORLG00000010027	srp54	63	96.809	ENSPVAG00000010056	SRP54	82	96.809	Pteropus_vampyrus
ENSORLG00000010027	srp54	100	99.802	ENSPNYG00000009717	srp54	100	99.802	Pundamilia_nyererei
ENSORLG00000010027	srp54	100	98.214	ENSPNAG00000008544	srp54	100	98.214	Pygocentrus_nattereri
ENSORLG00000010027	srp54	100	95.833	ENSRNOG00000032776	Srp54a	100	95.833	Rattus_norvegicus
ENSORLG00000010027	srp54	100	95.833	ENSRROG00000041292	SRP54	100	95.833	Rhinopithecus_roxellana
ENSORLG00000010027	srp54	86	51.474	YPR088C	SRP54	95	47.126	Saccharomyces_cerevisiae
ENSORLG00000010027	srp54	94	95.570	ENSSBOG00000035145	SRP54	100	95.570	Saimiri_boliviensis_boliviensis
ENSORLG00000010027	srp54	68	95.044	ENSSHAG00000000671	SRP54	100	95.044	Sarcophilus_harrisii
ENSORLG00000010027	srp54	100	98.214	ENSSFOG00015013920	srp54	100	98.214	Scleropages_formosus
ENSORLG00000010027	srp54	100	93.633	ENSSMAG00000002441	srp54	100	93.633	Scophthalmus_maximus
ENSORLG00000010027	srp54	100	99.206	ENSSDUG00000018586	srp54	100	99.206	Seriola_dumerili
ENSORLG00000010027	srp54	100	99.008	ENSSLDG00000010476	srp54	100	99.008	Seriola_lalandi_dorsalis
ENSORLG00000010027	srp54	100	95.833	ENSSARG00000002744	SRP54	100	95.833	Sorex_araneus
ENSORLG00000010027	srp54	100	95.833	ENSSPUG00000013101	SRP54	100	95.833	Sphenodon_punctatus
ENSORLG00000010027	srp54	100	99.405	ENSSPAG00000002354	srp54	100	99.405	Stegastes_partitus
ENSORLG00000010027	srp54	100	95.833	ENSSSCG00000001955	SRP54	100	95.833	Sus_scrofa
ENSORLG00000010027	srp54	94	95.148	ENSTGUG00000011945	-	95	95.148	Taeniopygia_guttata
ENSORLG00000010027	srp54	100	99.008	ENSTRUG00000007057	srp54	100	99.008	Takifugu_rubripes
ENSORLG00000010027	srp54	100	98.413	ENSTNIG00000002589	srp54	100	98.413	Tetraodon_nigroviridis
ENSORLG00000010027	srp54	89	87.025	ENSTBEG00000011409	SRP54	100	87.025	Tupaia_belangeri
ENSORLG00000010027	srp54	100	86.508	ENSTTRG00000000928	SRP54	100	86.508	Tursiops_truncatus
ENSORLG00000010027	srp54	52	96.565	ENSUAMG00000012385	SRP54	100	96.565	Ursus_americanus
ENSORLG00000010027	srp54	100	95.833	ENSUMAG00000011234	SRP54	100	95.833	Ursus_maritimus
ENSORLG00000010027	srp54	94	95.359	ENSVPAG00000005668	SRP54	100	95.359	Vicugna_pacos
ENSORLG00000010027	srp54	100	95.833	ENSVVUG00000019962	SRP54	100	95.833	Vulpes_vulpes
ENSORLG00000010027	srp54	100	81.065	ENSXETG00000012290	srp54	100	81.065	Xenopus_tropicalis
ENSORLG00000010027	srp54	88	99.097	ENSXCOG00000004658	srp54	96	99.097	Xiphophorus_couchianus
ENSORLG00000010027	srp54	100	99.206	ENSXMAG00000018315	srp54	100	99.206	Xiphophorus_maculatus