EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000010293 (Gene tree)
Gene ID: 101160652
Gene Symbol: prpf18
Alias: -
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 14327 bases
Position: chr6:20639959-20654285
Accession: 101160652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000012898	PRP4	PF08799.11	2.3e-13	1	1
ENSORLP00000034516	PRP4	PF08799.11	2.5e-13	1	1
ENSORLP00000012898	Prp18	PF02840.15	4.6e-61	1	1
ENSORLP00000034516	Prp18	PF02840.15	4.9e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000029264	-	5168	-	ENSORLP00000034516	354 (aa)	-	-
ENSORLT00000012899	-	4381	XM_004069691	ENSORLP00000012898	350 (aa)	XP_004069739	H2M396

Gene Model

Click here to download ENSORLG00000010293's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000010293's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000010293	prpf18	100	82.286	ENSG00000165630	PRPF18	100	82.286	Homo_sapiens
ENSORLG00000010293	prpf18	100	93.429	ENSAPOG00000024177	prpf18	100	93.429	Acanthochromis_polyacanthus
ENSORLG00000010293	prpf18	100	81.714	ENSAMEG00000013591	-	100	81.714	Ailuropoda_melanoleuca
ENSORLG00000010293	prpf18	100	90.857	ENSACIG00000001186	prpf18	100	90.857	Amphilophus_citrinellus
ENSORLG00000010293	prpf18	98	93.586	ENSAOCG00000006572	prpf18	94	93.567	Amphiprion_ocellaris
ENSORLG00000010293	prpf18	100	93.714	ENSAPEG00000004564	prpf18	100	93.714	Amphiprion_percula
ENSORLG00000010293	prpf18	100	90.571	ENSATEG00000000303	prpf18	100	90.571	Anabas_testudineus
ENSORLG00000010293	prpf18	99	79.885	ENSAPLG00000003387	-	99	79.885	Anas_platyrhynchos
ENSORLG00000010293	prpf18	100	82.571	ENSACAG00000000818	-	100	82.720	Anolis_carolinensis
ENSORLG00000010293	prpf18	100	82.621	ENSANAG00000037445	-	100	82.621	Aotus_nancymaae
ENSORLG00000010293	prpf18	100	90.286	ENSACLG00000026296	prpf18	100	90.286	Astatotilapia_calliptera
ENSORLG00000010293	prpf18	100	88.571	ENSAMXG00000012848	prpf18	100	88.571	Astyanax_mexicanus
ENSORLG00000010293	prpf18	100	82.336	ENSBTAG00000017244	PRPF18	100	82.336	Bos_taurus
ENSORLG00000010293	prpf18	98	40.227	WBGene00009320	F32B6.3	97	40.057	Caenorhabditis_elegans
ENSORLG00000010293	prpf18	100	82.621	ENSCJAG00000009432	-	100	82.621	Callithrix_jacchus
ENSORLG00000010293	prpf18	100	81.714	ENSCAFG00000004735	-	100	81.714	Canis_familiaris
ENSORLG00000010293	prpf18	100	81.714	ENSCAFG00020007712	-	100	81.714	Canis_lupus_dingo
ENSORLG00000010293	prpf18	100	82.336	ENSCHIG00000000499	-	100	82.336	Capra_hircus
ENSORLG00000010293	prpf18	100	82.051	ENSTSYG00000003517	-	100	82.051	Carlito_syrichta
ENSORLG00000010293	prpf18	100	82.906	ENSCPOG00000021069	-	100	82.906	Cavia_porcellus
ENSORLG00000010293	prpf18	100	82.621	ENSCCAG00000036822	-	100	82.621	Cebus_capucinus
ENSORLG00000010293	prpf18	100	71.714	ENSCATG00000016633	-	100	71.714	Cercocebus_atys
ENSORLG00000010293	prpf18	100	82.336	ENSCLAG00000011770	-	100	82.336	Chinchilla_lanigera
ENSORLG00000010293	prpf18	100	82.906	ENSCSAG00000013109	-	100	82.906	Chlorocebus_sabaeus
ENSORLG00000010293	prpf18	100	78.297	ENSCPBG00000003100	-	100	78.846	Chrysemys_picta_bellii
ENSORLG00000010293	prpf18	99	54.179	ENSCING00000020481	-	97	54.179	Ciona_intestinalis
ENSORLG00000010293	prpf18	99	53.143	ENSCSAVG00000010546	-	99	53.143	Ciona_savignyi
ENSORLG00000010293	prpf18	100	82.906	ENSCANG00000034900	-	100	82.906	Colobus_angolensis_palliatus
ENSORLG00000010293	prpf18	100	82.906	ENSCGRG00001023665	Prpf18	100	82.906	Cricetulus_griseus_chok1gshd
ENSORLG00000010293	prpf18	100	82.906	ENSCGRG00000014690	Prpf18	100	82.906	Cricetulus_griseus_crigri
ENSORLG00000010293	prpf18	100	90.286	ENSCSEG00000005536	prpf18	99	90.286	Cynoglossus_semilaevis
ENSORLG00000010293	prpf18	100	90.286	ENSCVAG00000012401	prpf18	100	90.286	Cyprinodon_variegatus
ENSORLG00000010293	prpf18	100	88.034	ENSDARG00000058306	prpf18	100	88.034	Danio_rerio
ENSORLG00000010293	prpf18	100	81.714	ENSDNOG00000035607	-	100	81.714	Dasypus_novemcinctus
ENSORLG00000010293	prpf18	100	81.429	ENSDORG00000000858	Prpf18	100	81.429	Dipodomys_ordii
ENSORLG00000010293	prpf18	99	50.720	FBgn0027784	Prp18	98	50.720	Drosophila_melanogaster
ENSORLG00000010293	prpf18	100	74.571	ENSETEG00000015060	-	100	74.571	Echinops_telfairi
ENSORLG00000010293	prpf18	100	69.714	ENSEBUG00000016502	prpf18	99	68.857	Eptatretus_burgeri
ENSORLG00000010293	prpf18	100	82.621	ENSEASG00005019373	-	100	82.621	Equus_asinus_asinus
ENSORLG00000010293	prpf18	100	82.621	ENSECAG00000006997	PRPF18	100	82.621	Equus_caballus
ENSORLG00000010293	prpf18	71	100.000	ENSEEUG00000001171	-	79	100.000	Erinaceus_europaeus
ENSORLG00000010293	prpf18	100	87.216	ENSELUG00000022190	prpf18	100	87.216	Esox_lucius
ENSORLG00000010293	prpf18	100	82.051	ENSFCAG00000004436	-	100	82.051	Felis_catus
ENSORLG00000010293	prpf18	93	79.692	ENSFALG00000001912	-	99	78.182	Ficedula_albicollis
ENSORLG00000010293	prpf18	99	56.447	ENSFDAG00000010713	-	97	56.447	Fukomys_damarensis
ENSORLG00000010293	prpf18	94	83.841	ENSFDAG00000014026	-	100	83.841	Fukomys_damarensis
ENSORLG00000010293	prpf18	78	95.238	ENSFHEG00000020125	prpf18	98	95.131	Fundulus_heteroclitus
ENSORLG00000010293	prpf18	99	84.814	ENSGMOG00000012210	prpf18	99	84.814	Gadus_morhua
ENSORLG00000010293	prpf18	100	80.857	ENSGALG00000043593	-	100	80.912	Gallus_gallus
ENSORLG00000010293	prpf18	100	88.286	ENSGAFG00000006034	prpf18	100	88.286	Gambusia_affinis
ENSORLG00000010293	prpf18	100	86.857	ENSGACG00000012232	prpf18	100	86.857	Gasterosteus_aculeatus
ENSORLG00000010293	prpf18	100	81.714	ENSGAGG00000016878	-	100	81.714	Gopherus_agassizii
ENSORLG00000010293	prpf18	93	81.846	ENSGGOG00000025188	-	97	83.386	Gorilla_gorilla
ENSORLG00000010293	prpf18	100	92.857	ENSHBUG00000010264	prpf18	100	92.857	Haplochromis_burtoni
ENSORLG00000010293	prpf18	100	81.714	ENSHGLG00000018534	PRPF18	100	81.714	Heterocephalus_glaber_female
ENSORLG00000010293	prpf18	94	83.537	ENSHGLG00100012161	-	98	83.537	Heterocephalus_glaber_male
ENSORLG00000010293	prpf18	100	92.571	ENSHCOG00000015987	prpf18	100	92.571	Hippocampus_comes
ENSORLG00000010293	prpf18	100	84.136	ENSIPUG00000007432	prpf18	100	83.853	Ictalurus_punctatus
ENSORLG00000010293	prpf18	100	82.336	ENSSTOG00000008735	-	100	82.336	Ictidomys_tridecemlineatus
ENSORLG00000010293	prpf18	100	82.286	ENSJJAG00000024041	-	100	82.286	Jaculus_jaculus
ENSORLG00000010293	prpf18	100	61.823	ENSJJAG00000015191	-	100	61.823	Jaculus_jaculus
ENSORLG00000010293	prpf18	100	91.143	ENSKMAG00000012124	prpf18	100	91.143	Kryptolebias_marmoratus
ENSORLG00000010293	prpf18	98	86.957	ENSLBEG00000028466	prpf18	99	86.957	Labrus_bergylta
ENSORLG00000010293	prpf18	100	81.481	ENSLACG00000009885	prpf18	100	82.051	Latimeria_chalumnae
ENSORLG00000010293	prpf18	100	86.895	ENSLOCG00000016736	prpf18	100	86.895	Lepisosteus_oculatus
ENSORLG00000010293	prpf18	100	82.286	ENSLAFG00000007753	-	100	82.286	Loxodonta_africana
ENSORLG00000010293	prpf18	100	82.906	ENSMFAG00000000540	-	100	82.906	Macaca_fascicularis
ENSORLG00000010293	prpf18	100	82.906	ENSMMUG00000015071	PRPF18	93	93.377	Macaca_mulatta
ENSORLG00000010293	prpf18	100	82.906	ENSMNEG00000024679	-	100	82.906	Macaca_nemestrina
ENSORLG00000010293	prpf18	100	67.429	ENSMLEG00000031715	-	91	80.000	Mandrillus_leucophaeus
ENSORLG00000010293	prpf18	100	92.857	ENSMAMG00000006610	prpf18	100	92.857	Mastacembelus_armatus
ENSORLG00000010293	prpf18	100	92.857	ENSMZEG00005019392	prpf18	100	92.857	Maylandia_zebra
ENSORLG00000010293	prpf18	100	80.857	ENSMGAG00000005023	-	100	80.857	Meleagris_gallopavo
ENSORLG00000010293	prpf18	100	82.621	ENSMICG00000006572	-	100	82.621	Microcebus_murinus
ENSORLG00000010293	prpf18	100	82.286	ENSMOCG00000021468	Prpf18	100	82.286	Microtus_ochrogaster
ENSORLG00000010293	prpf18	100	90.571	ENSMMOG00000013012	prpf18	100	90.571	Mola_mola
ENSORLG00000010293	prpf18	100	74.571	ENSMODG00000024043	-	100	74.571	Monodelphis_domestica
ENSORLG00000010293	prpf18	99	77.299	ENSMODG00000016902	-	95	77.299	Monodelphis_domestica
ENSORLG00000010293	prpf18	100	83.429	ENSMALG00000005486	prpf18	100	83.714	Monopterus_albus
ENSORLG00000010293	prpf18	100	82.906	MGP_CAROLIEiJ_G0023143	Prpf18	100	94.521	Mus_caroli
ENSORLG00000010293	prpf18	100	82.906	ENSMUSG00000039449	Prpf18	100	94.521	Mus_musculus
ENSORLG00000010293	prpf18	100	82.571	MGP_PahariEiJ_G0019203	Prpf18	100	94.521	Mus_pahari
ENSORLG00000010293	prpf18	100	82.621	MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	Mus_spretus
ENSORLG00000010293	prpf18	100	81.429	ENSMPUG00000000938	-	100	81.429	Mustela_putorius_furo
ENSORLG00000010293	prpf18	100	82.621	ENSMLUG00000009200	-	100	82.621	Myotis_lucifugus
ENSORLG00000010293	prpf18	66	81.897	ENSNGAG00000023550	-	83	81.897	Nannospalax_galili
ENSORLG00000010293	prpf18	100	82.286	ENSNGAG00000012500	-	100	82.286	Nannospalax_galili
ENSORLG00000010293	prpf18	100	90.286	ENSNBRG00000001778	prpf18	100	90.286	Neolamprologus_brichardi
ENSORLG00000010293	prpf18	100	82.906	ENSNLEG00000012186	-	100	82.906	Nomascus_leucogenys
ENSORLG00000010293	prpf18	74	72.973	ENSMEUG00000005032	-	75	72.973	Notamacropus_eugenii
ENSORLG00000010293	prpf18	78	63.004	ENSOPRG00000002153	-	100	65.283	Ochotona_princeps
ENSORLG00000010293	prpf18	100	81.714	ENSODEG00000003770	-	100	81.714	Octodon_degus
ENSORLG00000010293	prpf18	98	90.087	ENSONIG00000014854	prpf18	96	90.087	Oreochromis_niloticus
ENSORLG00000010293	prpf18	100	82.051	ENSOANG00000015404	-	100	82.051	Ornithorhynchus_anatinus
ENSORLG00000010293	prpf18	100	82.000	ENSOCUG00000027756	-	96	82.985	Oryctolagus_cuniculus
ENSORLG00000010293	prpf18	100	100.000	ENSORLG00020001530	prpf18	100	100.000	Oryzias_latipes_hni
ENSORLG00000010293	prpf18	100	99.429	ENSORLG00015013705	prpf18	100	99.429	Oryzias_latipes_hsok
ENSORLG00000010293	prpf18	100	94.857	ENSOMEG00000009167	prpf18	100	94.857	Oryzias_melastigma
ENSORLG00000010293	prpf18	100	81.429	ENSOGAG00000007294	-	100	81.429	Otolemur_garnettii
ENSORLG00000010293	prpf18	100	82.336	ENSOARG00000006243	-	100	82.336	Ovis_aries
ENSORLG00000010293	prpf18	100	82.906	ENSPPAG00000041959	-	100	82.906	Pan_paniscus
ENSORLG00000010293	prpf18	100	81.429	ENSPPRG00000000107	-	100	81.429	Panthera_pardus
ENSORLG00000010293	prpf18	100	81.429	ENSPTIG00000021094	-	100	81.429	Panthera_tigris_altaica
ENSORLG00000010293	prpf18	100	82.906	ENSPTRG00000002306	PRPF18	100	82.906	Pan_troglodytes
ENSORLG00000010293	prpf18	100	82.621	ENSPANG00000023346	-	100	82.621	Papio_anubis
ENSORLG00000010293	prpf18	100	85.755	ENSPKIG00000014128	prpf18	96	85.755	Paramormyrops_kingsleyae
ENSORLG00000010293	prpf18	100	81.714	ENSPSIG00000016064	-	100	81.714	Pelodiscus_sinensis
ENSORLG00000010293	prpf18	100	83.476	ENSPMGG00000016486	prpf18	100	83.476	Periophthalmus_magnuspinnatus
ENSORLG00000010293	prpf18	100	82.621	ENSPEMG00000013704	Prpf18	100	82.621	Peromyscus_maniculatus_bairdii
ENSORLG00000010293	prpf18	100	73.714	ENSPMAG00000000204	prpf18	100	73.714	Petromyzon_marinus
ENSORLG00000010293	prpf18	93	81.231	ENSPCIG00000012963	-	99	82.965	Phascolarctos_cinereus
ENSORLG00000010293	prpf18	100	89.429	ENSPFOG00000017611	prpf18	100	89.429	Poecilia_formosa
ENSORLG00000010293	prpf18	100	87.714	ENSPLAG00000000369	prpf18	100	87.714	Poecilia_latipinna
ENSORLG00000010293	prpf18	100	89.714	ENSPMEG00000005183	prpf18	100	89.714	Poecilia_mexicana
ENSORLG00000010293	prpf18	100	88.286	ENSPREG00000015232	prpf18	100	88.286	Poecilia_reticulata
ENSORLG00000010293	prpf18	100	82.000	ENSPPYG00000002101	PRPF18	100	82.000	Pongo_abelii
ENSORLG00000010293	prpf18	100	64.857	ENSPCAG00000010833	-	100	64.857	Procavia_capensis
ENSORLG00000010293	prpf18	100	77.714	ENSPCOG00000013057	-	100	77.714	Propithecus_coquereli
ENSORLG00000010293	prpf18	100	50.857	ENSPVAG00000002947	-	100	50.857	Pteropus_vampyrus
ENSORLG00000010293	prpf18	100	92.571	ENSPNYG00000003554	prpf18	100	92.571	Pundamilia_nyererei
ENSORLG00000010293	prpf18	100	88.319	ENSPNAG00000023151	prpf18	100	88.319	Pygocentrus_nattereri
ENSORLG00000010293	prpf18	100	82.906	ENSRNOG00000018396	Prpf18	100	82.906	Rattus_norvegicus
ENSORLG00000010293	prpf18	100	82.621	ENSRBIG00000028028	-	100	82.621	Rhinopithecus_bieti
ENSORLG00000010293	prpf18	100	82.906	ENSRROG00000040695	-	100	82.906	Rhinopithecus_roxellana
ENSORLG00000010293	prpf18	100	82.621	ENSSBOG00000034482	-	100	82.621	Saimiri_boliviensis_boliviensis
ENSORLG00000010293	prpf18	100	82.286	ENSSHAG00000016463	-	100	82.286	Sarcophilus_harrisii
ENSORLG00000010293	prpf18	100	67.429	ENSSHAG00000009669	-	100	67.429	Sarcophilus_harrisii
ENSORLG00000010293	prpf18	72	49.801	ENSSFOG00015021154	-	95	49.004	Scleropages_formosus
ENSORLG00000010293	prpf18	98	86.377	ENSSFOG00015022118	prpf18	100	79.832	Scleropages_formosus
ENSORLG00000010293	prpf18	100	90.571	ENSSMAG00000005308	prpf18	100	90.571	Scophthalmus_maximus
ENSORLG00000010293	prpf18	100	94.286	ENSSDUG00000015428	prpf18	100	94.286	Seriola_dumerili
ENSORLG00000010293	prpf18	100	94.000	ENSSLDG00000023989	prpf18	100	94.000	Seriola_lalandi_dorsalis
ENSORLG00000010293	prpf18	100	54.286	ENSSARG00000005307	-	100	54.286	Sorex_araneus
ENSORLG00000010293	prpf18	100	81.714	ENSSPUG00000002619	-	100	81.714	Sphenodon_punctatus
ENSORLG00000010293	prpf18	100	94.000	ENSSPAG00000019502	prpf18	100	94.000	Stegastes_partitus
ENSORLG00000010293	prpf18	100	82.336	ENSSSCG00000026354	-	100	82.336	Sus_scrofa
ENSORLG00000010293	prpf18	100	81.143	ENSTGUG00000002286	-	100	81.143	Taeniopygia_guttata
ENSORLG00000010293	prpf18	100	86.857	ENSTRUG00000011278	prpf18	100	86.857	Takifugu_rubripes
ENSORLG00000010293	prpf18	100	87.429	ENSTNIG00000000911	prpf18	100	87.429	Tetraodon_nigroviridis
ENSORLG00000010293	prpf18	80	98.718	ENSTBEG00000013011	-	79	98.718	Tupaia_belangeri
ENSORLG00000010293	prpf18	100	82.286	ENSTTRG00000011117	PRPF18	100	82.286	Tursiops_truncatus
ENSORLG00000010293	prpf18	91	84.326	ENSUAMG00000001815	-	93	84.326	Ursus_americanus
ENSORLG00000010293	prpf18	100	76.857	ENSUMAG00000012329	-	100	76.857	Ursus_maritimus
ENSORLG00000010293	prpf18	100	76.571	ENSVPAG00000011486	-	100	76.571	Vicugna_pacos
ENSORLG00000010293	prpf18	100	82.336	ENSVVUG00000005453	-	100	82.336	Vulpes_vulpes
ENSORLG00000010293	prpf18	100	74.857	ENSXETG00000024057	prpf18	100	74.571	Xenopus_tropicalis
ENSORLG00000010293	prpf18	100	87.784	ENSXCOG00000020414	prpf18	100	87.784	Xiphophorus_couchianus
ENSORLG00000010293	prpf18	100	90.000	ENSXMAG00000004713	prpf18	91	90.000	Xiphophorus_maculatus