EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000010552 (Gene tree)
Gene ID: 100049345
Gene Symbol: smn1
Alias: -
Full Name: survival motor neuron protein 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 6258 bases
Position: chr9:16327898-16334155
Accession: 100049345
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000013230	SMN	PF06003.12	3.8e-107	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000013231	-	1092	XM_004072465	ENSORLP00000013230	283 (aa)	XP_004072513	H2M469

Gene Model

Click here to download ENSORLG00000010552's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000010552's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000010552	smn1	94	52.399	ENSG00000205571	SMN2	92	52.471	Homo_sapiens
ENSORLG00000010552	smn1	94	52.399	ENSG00000172062	SMN1	92	52.471	Homo_sapiens
ENSORLG00000010552	smn1	100	79.152	ENSAPOG00000011324	smn1	100	79.152	Acanthochromis_polyacanthus
ENSORLG00000010552	smn1	94	52.747	ENSAMEG00000003316	-	52	61.783	Ailuropoda_melanoleuca
ENSORLG00000010552	smn1	59	76.190	ENSACIG00000007598	smn1	92	77.381	Amphilophus_citrinellus
ENSORLG00000010552	smn1	93	74.144	ENSACIG00000019772	-	99	74.144	Amphilophus_citrinellus
ENSORLG00000010552	smn1	100	79.152	ENSAOCG00000024444	smn1	100	79.152	Amphiprion_ocellaris
ENSORLG00000010552	smn1	100	79.505	ENSAPEG00000016504	smn1	100	79.505	Amphiprion_percula
ENSORLG00000010552	smn1	95	78.519	ENSATEG00000002182	smn1	82	78.519	Anabas_testudineus
ENSORLG00000010552	smn1	98	52.448	ENSACAG00000010017	-	96	48.829	Anolis_carolinensis
ENSORLG00000010552	smn1	57	57.738	ENSANAG00000032133	-	95	47.387	Aotus_nancymaae
ENSORLG00000010552	smn1	99	76.678	ENSACLG00000007308	smn1	94	73.793	Astatotilapia_calliptera
ENSORLG00000010552	smn1	100	65.845	ENSAMXG00000013884	smn1	100	63.322	Astyanax_mexicanus
ENSORLG00000010552	smn1	94	52.593	ENSBTAG00000005743	SMN2	93	47.778	Bos_taurus
ENSORLG00000010552	smn1	94	46.667	ENSCJAG00000016290	-	60	60.759	Callithrix_jacchus
ENSORLG00000010552	smn1	94	51.971	ENSCAFG00000007812	SMN	54	60.256	Canis_familiaris
ENSORLG00000010552	smn1	94	51.971	ENSCAFG00020019229	-	50	60.256	Canis_lupus_dingo
ENSORLG00000010552	smn1	94	52.206	ENSCHIG00000015559	-	91	50.735	Capra_hircus
ENSORLG00000010552	smn1	94	52.768	ENSTSYG00000012058	-	93	51.812	Carlito_syrichta
ENSORLG00000010552	smn1	73	45.455	ENSCAPG00000011021	-	91	41.589	Cavia_aperea
ENSORLG00000010552	smn1	53	60.784	ENSCPOG00000036973	-	53	59.748	Cavia_porcellus
ENSORLG00000010552	smn1	53	58.125	ENSCPOG00000012328	-	54	58.282	Cavia_porcellus
ENSORLG00000010552	smn1	94	49.630	ENSCCAG00000018127	-	60	60.127	Cebus_capucinus
ENSORLG00000010552	smn1	94	52.030	ENSCATG00000037002	-	92	52.091	Cercocebus_atys
ENSORLG00000010552	smn1	94	51.449	ENSCLAG00000000284	-	92	51.601	Chinchilla_lanigera
ENSORLG00000010552	smn1	94	53.137	ENSCSAG00000015688	-	54	61.392	Chlorocebus_sabaeus
ENSORLG00000010552	smn1	51	58.219	ENSCHOG00000007346	-	100	47.826	Choloepus_hoffmanni
ENSORLG00000010552	smn1	96	49.296	ENSCPBG00000010968	-	58	58.667	Chrysemys_picta_bellii
ENSORLG00000010552	smn1	92	50.370	ENSCANG00000033324	-	60	56.962	Colobus_angolensis_palliatus
ENSORLG00000010552	smn1	94	52.399	ENSCANG00000038242	-	60	60.759	Colobus_angolensis_palliatus
ENSORLG00000010552	smn1	94	53.903	ENSCGRG00001017959	-	93	50.558	Cricetulus_griseus_chok1gshd
ENSORLG00000010552	smn1	94	53.903	ENSCGRG00000007698	Smn1	93	50.558	Cricetulus_griseus_crigri
ENSORLG00000010552	smn1	97	64.437	ENSCSEG00000015227	smn1	99	63.121	Cynoglossus_semilaevis
ENSORLG00000010552	smn1	100	78.521	ENSCVAG00000007498	smn1	100	78.521	Cyprinodon_variegatus
ENSORLG00000010552	smn1	100	62.238	ENSDARG00000018494	smn1	100	59.298	Danio_rerio
ENSORLG00000010552	smn1	94	41.544	ENSDORG00000007082	Smn1	90	44.569	Dipodomys_ordii
ENSORLG00000010552	smn1	54	50.000	ENSETEG00000001406	-	75	51.899	Echinops_telfairi
ENSORLG00000010552	smn1	96	37.288	ENSEBUG00000011902	smn1	60	42.938	Eptatretus_burgeri
ENSORLG00000010552	smn1	89	47.059	ENSEASG00005018000	-	50	53.061	Equus_asinus_asinus
ENSORLG00000010552	smn1	94	51.852	ENSECAG00000015215	-	93	51.838	Equus_caballus
ENSORLG00000010552	smn1	88	50.575	ENSEEUG00000015777	-	59	58.503	Erinaceus_europaeus
ENSORLG00000010552	smn1	100	66.197	ENSELUG00000018067	smn1	100	62.191	Esox_lucius
ENSORLG00000010552	smn1	94	52.015	ENSFCAG00000028292	SMN	60	60.645	Felis_catus
ENSORLG00000010552	smn1	95	53.623	ENSFALG00000012320	-	52	62.329	Ficedula_albicollis
ENSORLG00000010552	smn1	94	48.000	ENSFDAG00000017683	-	54	56.442	Fukomys_damarensis
ENSORLG00000010552	smn1	97	80.072	ENSFHEG00000018508	smn1	100	79.710	Fundulus_heteroclitus
ENSORLG00000010552	smn1	100	62.456	ENSGMOG00000017279	smn1	98	56.537	Gadus_morhua
ENSORLG00000010552	smn1	95	55.720	ENSGALG00000002430	SMN	67	54.301	Gallus_gallus
ENSORLG00000010552	smn1	100	81.272	ENSGAFG00000009501	smn1	100	81.272	Gambusia_affinis
ENSORLG00000010552	smn1	100	77.465	ENSGACG00000010584	smn1	97	76.408	Gasterosteus_aculeatus
ENSORLG00000010552	smn1	55	59.877	ENSGAGG00000011374	-	58	59.877	Gopherus_agassizii
ENSORLG00000010552	smn1	70	37.624	ENSGAGG00000013639	-	68	41.935	Gopherus_agassizii
ENSORLG00000010552	smn1	54	60.127	ENSGGOG00000026704	-	74	60.127	Gorilla_gorilla
ENSORLG00000010552	smn1	91	49.430	ENSGGOG00000003872	-	64	60.127	Gorilla_gorilla
ENSORLG00000010552	smn1	100	79.505	ENSHBUG00000013987	smn1	100	76.207	Haplochromis_burtoni
ENSORLG00000010552	smn1	94	51.439	ENSHGLG00000001018	-	92	50.890	Heterocephalus_glaber_female
ENSORLG00000010552	smn1	94	47.619	ENSHGLG00000001905	-	94	46.863	Heterocephalus_glaber_female
ENSORLG00000010552	smn1	94	51.439	ENSHGLG00100011252	-	92	50.890	Heterocephalus_glaber_male
ENSORLG00000010552	smn1	92	47.566	ENSHGLG00100018676	-	96	46.792	Heterocephalus_glaber_male
ENSORLG00000010552	smn1	94	69.065	ENSHCOG00000017136	smn1	89	73.585	Hippocampus_comes
ENSORLG00000010552	smn1	100	63.763	ENSIPUG00000012580	smn1	89	62.199	Ictalurus_punctatus
ENSORLG00000010552	smn1	91	51.341	ENSSTOG00000012288	-	56	59.740	Ictidomys_tridecemlineatus
ENSORLG00000010552	smn1	50	51.748	ENSJJAG00000014853	-	87	50.588	Jaculus_jaculus
ENSORLG00000010552	smn1	100	76.224	ENSKMAG00000007239	smn1	100	74.564	Kryptolebias_marmoratus
ENSORLG00000010552	smn1	100	80.986	ENSLBEG00000022550	smn1	100	80.986	Labrus_bergylta
ENSORLG00000010552	smn1	97	34.641	ENSLACG00000009808	-	51	40.000	Latimeria_chalumnae
ENSORLG00000010552	smn1	100	54.167	ENSLOCG00000011339	smn1	100	52.759	Lepisosteus_oculatus
ENSORLG00000010552	smn1	94	50.903	ENSLAFG00000003425	-	53	58.750	Loxodonta_africana
ENSORLG00000010552	smn1	94	53.137	ENSMFAG00000031523	SMN1	95	52.273	Macaca_fascicularis
ENSORLG00000010552	smn1	94	49.077	ENSMFAG00000008812	-	91	48.897	Macaca_fascicularis
ENSORLG00000010552	smn1	94	53.137	ENSMMUG00000020214	SMN1	92	53.612	Macaca_mulatta
ENSORLG00000010552	smn1	94	48.339	ENSMMUG00000030594	-	54	54.268	Macaca_mulatta
ENSORLG00000010552	smn1	94	53.137	ENSMNEG00000035094	-	92	53.612	Macaca_nemestrina
ENSORLG00000010552	smn1	94	53.137	ENSMLEG00000041902	-	93	53.612	Mandrillus_leucophaeus
ENSORLG00000010552	smn1	100	79.930	ENSMAMG00000011034	smn1	100	79.930	Mastacembelus_armatus
ENSORLG00000010552	smn1	100	79.505	ENSMZEG00005013634	smn1	100	78.799	Maylandia_zebra
ENSORLG00000010552	smn1	69	50.761	ENSMGAG00000008889	-	95	44.118	Meleagris_gallopavo
ENSORLG00000010552	smn1	94	49.814	ENSMAUG00000010262	Smn1	93	49.442	Mesocricetus_auratus
ENSORLG00000010552	smn1	54	60.127	ENSMICG00000034708	-	77	56.322	Microcebus_murinus
ENSORLG00000010552	smn1	94	53.532	ENSMOCG00000017833	Smn1	92	50.000	Microtus_ochrogaster
ENSORLG00000010552	smn1	96	67.391	ENSMMOG00000005504	smn1	98	69.565	Mola_mola
ENSORLG00000010552	smn1	94	53.480	ENSMODG00000001436	-	59	60.588	Monodelphis_domestica
ENSORLG00000010552	smn1	100	80.986	ENSMALG00000008025	smn1	100	80.986	Monopterus_albus
ENSORLG00000010552	smn1	94	54.074	MGP_CAROLIEiJ_G0018836	Smn1	93	54.074	Mus_caroli
ENSORLG00000010552	smn1	94	53.704	ENSMUSG00000021645	Smn1	93	53.704	Mus_musculus
ENSORLG00000010552	smn1	94	54.444	MGP_PahariEiJ_G0015911	Smn1	93	53.137	Mus_pahari
ENSORLG00000010552	smn1	94	53.333	MGP_SPRETEiJ_G0019718	Smn1	93	53.333	Mus_spretus
ENSORLG00000010552	smn1	92	51.504	ENSMPUG00000014470	-	56	60.510	Mustela_putorius_furo
ENSORLG00000010552	smn1	94	51.254	ENSMLUG00000010603	-	50	59.615	Myotis_lucifugus
ENSORLG00000010552	smn1	94	51.838	ENSNGAG00000019833	Smn1	54	57.692	Nannospalax_galili
ENSORLG00000010552	smn1	100	80.919	ENSNBRG00000023000	smn1	100	80.919	Neolamprologus_brichardi
ENSORLG00000010552	smn1	94	52.768	ENSNLEG00000004454	-	92	52.852	Nomascus_leucogenys
ENSORLG00000010552	smn1	88	52.471	ENSOPRG00000002015	-	58	61.745	Ochotona_princeps
ENSORLG00000010552	smn1	91	49.237	ENSODEG00000015976	-	91	49.237	Octodon_degus
ENSORLG00000010552	smn1	100	80.565	ENSONIG00000011799	smn1	100	80.565	Oreochromis_niloticus
ENSORLG00000010552	smn1	95	52.727	ENSOANG00000001626	-	57	55.975	Ornithorhynchus_anatinus
ENSORLG00000010552	smn1	94	51.812	ENSOCUG00000026649	-	92	52.669	Oryctolagus_cuniculus
ENSORLG00000010552	smn1	94	40.000	ENSOCUG00000025183	-	92	39.636	Oryctolagus_cuniculus
ENSORLG00000010552	smn1	94	52.030	ENSOCUG00000017097	-	92	51.812	Oryctolagus_cuniculus
ENSORLG00000010552	smn1	100	89.789	ENSORLG00020007936	smn1	100	89.789	Oryzias_latipes_hni
ENSORLG00000010552	smn1	100	96.820	ENSORLG00015022425	smn1	100	96.820	Oryzias_latipes_hsok
ENSORLG00000010552	smn1	100	90.459	ENSOMEG00000007824	smn1	100	90.459	Oryzias_melastigma
ENSORLG00000010552	smn1	91	47.566	ENSOGAG00000031414	-	92	46.296	Otolemur_garnettii
ENSORLG00000010552	smn1	94	51.111	ENSOARG00000005425	-	97	46.468	Ovis_aries
ENSORLG00000010552	smn1	94	52.399	ENSPPAG00000036640	-	92	52.471	Pan_paniscus
ENSORLG00000010552	smn1	94	52.015	ENSPPRG00000005575	-	60	60.645	Panthera_pardus
ENSORLG00000010552	smn1	94	52.381	ENSPTIG00000007745	-	60	60.645	Panthera_tigris_altaica
ENSORLG00000010552	smn1	94	51.825	ENSPTRG00000016955	-	60	60.127	Pan_troglodytes
ENSORLG00000010552	smn1	94	49.815	ENSPANG00000000253	-	58	57.595	Papio_anubis
ENSORLG00000010552	smn1	94	53.137	ENSPANG00000013601	-	91	52.941	Papio_anubis
ENSORLG00000010552	smn1	100	58.596	ENSPKIG00000011096	smn1	100	58.042	Paramormyrops_kingsleyae
ENSORLG00000010552	smn1	100	66.899	ENSPMGG00000012285	smn1	97	70.956	Periophthalmus_magnuspinnatus
ENSORLG00000010552	smn1	92	39.502	ENSPMAG00000005004	smn1	91	40.149	Petromyzon_marinus
ENSORLG00000010552	smn1	97	52.921	ENSPCIG00000025764	-	59	59.172	Phascolarctos_cinereus
ENSORLG00000010552	smn1	100	80.565	ENSPFOG00000007786	smn1	100	80.565	Poecilia_formosa
ENSORLG00000010552	smn1	100	80.919	ENSPLAG00000012071	smn1	100	80.919	Poecilia_latipinna
ENSORLG00000010552	smn1	100	80.565	ENSPMEG00000017085	smn1	100	80.565	Poecilia_mexicana
ENSORLG00000010552	smn1	100	80.565	ENSPREG00000005824	smn1	100	80.565	Poecilia_reticulata
ENSORLG00000010552	smn1	61	73.077	ENSPPYG00000019189	-	83	46.471	Pongo_abelii
ENSORLG00000010552	smn1	92	51.136	ENSPPYG00000015533	-	95	51.136	Pongo_abelii
ENSORLG00000010552	smn1	91	51.119	ENSPCAG00000004187	-	56	57.616	Procavia_capensis
ENSORLG00000010552	smn1	59	51.705	ENSPCOG00000022307	-	77	52.326	Propithecus_coquereli
ENSORLG00000010552	smn1	94	52.941	ENSPVAG00000005977	-	53	61.538	Pteropus_vampyrus
ENSORLG00000010552	smn1	100	80.919	ENSPNYG00000014148	smn1	100	80.919	Pundamilia_nyererei
ENSORLG00000010552	smn1	100	65.263	ENSPNAG00000014007	smn1	87	58.478	Pygocentrus_nattereri
ENSORLG00000010552	smn1	95	52.574	ENSRNOG00000018067	Smn1	93	48.727	Rattus_norvegicus
ENSORLG00000010552	smn1	94	52.768	ENSRBIG00000037052	-	60	60.759	Rhinopithecus_bieti
ENSORLG00000010552	smn1	92	47.909	ENSRBIG00000036775	-	58	58.228	Rhinopithecus_bieti
ENSORLG00000010552	smn1	94	45.788	ENSRROG00000031088	-	60	58.065	Rhinopithecus_roxellana
ENSORLG00000010552	smn1	94	52.768	ENSRROG00000039399	-	60	60.759	Rhinopithecus_roxellana
ENSORLG00000010552	smn1	94	50.741	ENSSBOG00000011665	-	60	61.392	Saimiri_boliviensis_boliviensis
ENSORLG00000010552	smn1	52	56.000	ENSSBOG00000020112	-	52	56.410	Saimiri_boliviensis_boliviensis
ENSORLG00000010552	smn1	96	54.225	ENSSHAG00000001499	-	57	60.000	Sarcophilus_harrisii
ENSORLG00000010552	smn1	100	63.028	ENSSFOG00015015507	smn1	100	58.657	Scleropages_formosus
ENSORLG00000010552	smn1	100	74.558	ENSSMAG00000007922	smn1	100	77.032	Scophthalmus_maximus
ENSORLG00000010552	smn1	100	81.338	ENSSDUG00000018533	smn1	100	81.338	Seriola_dumerili
ENSORLG00000010552	smn1	100	81.690	ENSSLDG00000021135	smn1	100	81.690	Seriola_lalandi_dorsalis
ENSORLG00000010552	smn1	97	54.965	ENSSPUG00000000373	-	99	47.712	Sphenodon_punctatus
ENSORLG00000010552	smn1	100	79.152	ENSSPAG00000004345	smn1	100	79.152	Stegastes_partitus
ENSORLG00000010552	smn1	57	59.167	ENSSSCG00000029127	-	67	68.750	Sus_scrofa
ENSORLG00000010552	smn1	94	53.309	ENSSSCG00000016970	-	92	50.185	Sus_scrofa
ENSORLG00000010552	smn1	91	52.256	ENSTGUG00000001548	-	95	48.507	Taeniopygia_guttata
ENSORLG00000010552	smn1	100	65.724	ENSTRUG00000000736	smn	100	63.604	Takifugu_rubripes
ENSORLG00000010552	smn1	100	64.726	ENSTNIG00000009892	smn1	100	64.726	Tetraodon_nigroviridis
ENSORLG00000010552	smn1	54	62.025	ENSTBEG00000002399	-	76	61.146	Tupaia_belangeri
ENSORLG00000010552	smn1	54	60.256	ENSTTRG00000005080	-	54	60.256	Tursiops_truncatus
ENSORLG00000010552	smn1	54	60.256	ENSUAMG00000024947	-	57	60.256	Ursus_americanus
ENSORLG00000010552	smn1	60	77.778	ENSVPAG00000009887	-	62	82.609	Vicugna_pacos
ENSORLG00000010552	smn1	94	51.971	ENSVVUG00000006934	-	54	60.256	Vulpes_vulpes
ENSORLG00000010552	smn1	95	55.755	ENSXETG00000018189	smn2	95	51.049	Xenopus_tropicalis
ENSORLG00000010552	smn1	87	34.981	ENSXETG00000004912	-	82	61.017	Xenopus_tropicalis
ENSORLG00000010552	smn1	100	79.859	ENSXMAG00000001521	smn1	100	79.859	Xiphophorus_maculatus