EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000011049 (Gene tree)
Gene ID: 101169942
Gene Symbol: mbd4
Alias: -
Full Name: methyl-CpG binding domain 4%2C DNA glycosylase
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 7156 bases
Position: chr7:17192890-17200045
Accession: 101169942
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000013860	MBD	PF01429.19	7.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000013861	-	5951	XM_004070780	ENSORLP00000013860	440 (aa)	XP_004070828	H2M5X2

Gene Model

Click here to download ENSORLG00000011049's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000011049's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000011049	mbd4	53	78.698	ENSG00000129071	MBD4	88	63.519	Homo_sapiens
ENSORLG00000011049	mbd4	99	58.811	ENSAPOG00000021668	mbd4	98	58.811	Acanthochromis_polyacanthus
ENSORLG00000011049	mbd4	99	58.723	ENSAOCG00000001157	mbd4	98	58.723	Amphiprion_ocellaris
ENSORLG00000011049	mbd4	99	57.660	ENSAPEG00000016131	mbd4	98	57.660	Amphiprion_percula
ENSORLG00000011049	mbd4	99	57.143	ENSATEG00000014594	MBD4	88	57.143	Anabas_testudineus
ENSORLG00000011049	mbd4	66	73.096	ENSAMXG00000017271	mbd4	69	72.727	Astyanax_mexicanus
ENSORLG00000011049	mbd4	87	52.381	ENSCAFG00000004867	MBD4	59	52.381	Canis_familiaris
ENSORLG00000011049	mbd4	87	52.381	ENSCAFG00020007082	MBD4	59	52.381	Canis_lupus_dingo
ENSORLG00000011049	mbd4	73	81.065	ENSCPBG00000014704	MBD4	54	81.065	Chrysemys_picta_bellii
ENSORLG00000011049	mbd4	97	38.646	ENSEBUG00000010816	mbd4	52	63.905	Eptatretus_burgeri
ENSORLG00000011049	mbd4	98	48.262	ENSELUG00000018483	MBD4	60	65.580	Esox_lucius
ENSORLG00000011049	mbd4	97	47.737	ENSGMOG00000013830	mbd4	100	46.764	Gadus_morhua
ENSORLG00000011049	mbd4	97	56.044	ENSGAFG00000016011	mbd4	98	56.044	Gambusia_affinis
ENSORLG00000011049	mbd4	87	43.878	ENSGACG00000001970	-	84	43.655	Gasterosteus_aculeatus
ENSORLG00000011049	mbd4	66	80.473	ENSGAGG00000018644	MBD4	51	80.473	Gopherus_agassizii
ENSORLG00000011049	mbd4	98	43.943	ENSSTOG00000020663	MBD4	51	65.625	Ictidomys_tridecemlineatus
ENSORLG00000011049	mbd4	97	55.752	ENSKMAG00000015015	mbd4	97	55.752	Kryptolebias_marmoratus
ENSORLG00000011049	mbd4	99	53.632	ENSLBEG00000005669	MBD4	88	53.632	Labrus_bergylta
ENSORLG00000011049	mbd4	79	56.631	ENSLOCG00000013054	MBD4	99	43.713	Lepisosteus_oculatus
ENSORLG00000011049	mbd4	60	39.085	ENSMAMG00000024084	-	78	39.085	Mastacembelus_armatus
ENSORLG00000011049	mbd4	99	56.531	ENSMALG00000021517	mbd4	88	56.531	Monopterus_albus
ENSORLG00000011049	mbd4	99	43.651	MGP_CAROLIEiJ_G0028760	Mbd4	50	66.968	Mus_caroli
ENSORLG00000011049	mbd4	99	44.758	MGP_SPRETEiJ_G0029788	Mbd4	87	43.936	Mus_spretus
ENSORLG00000011049	mbd4	98	42.570	ENSOPRG00000000473	MBD4	86	42.254	Ochotona_princeps
ENSORLG00000011049	mbd4	97	56.399	ENSONIG00000017212	mbd4	100	55.957	Oreochromis_niloticus
ENSORLG00000011049	mbd4	100	97.045	ENSORLG00020020013	mbd4	100	97.045	Oryzias_latipes_hni
ENSORLG00000011049	mbd4	100	97.500	ENSORLG00015015342	mbd4	100	97.500	Oryzias_latipes_hsok
ENSORLG00000011049	mbd4	100	82.313	ENSOMEG00000008819	mbd4	93	82.313	Oryzias_melastigma
ENSORLG00000011049	mbd4	98	43.827	ENSOARG00000014699	MBD4	86	43.827	Ovis_aries
ENSORLG00000011049	mbd4	99	49.342	ENSPKIG00000012306	MBD4	76	49.342	Paramormyrops_kingsleyae
ENSORLG00000011049	mbd4	97	54.783	ENSPFOG00000014471	mbd4	98	54.783	Poecilia_formosa
ENSORLG00000011049	mbd4	64	63.675	ENSRNOG00000010919	Mbd4	52	63.675	Rattus_norvegicus
ENSORLG00000011049	mbd4	74	78.698	ENSSHAG00000012953	MBD4	57	78.698	Sarcophilus_harrisii
ENSORLG00000011049	mbd4	97	48.817	ENSSFOG00015016292	mbd4	55	74.211	Scleropages_formosus
ENSORLG00000011049	mbd4	99	56.466	ENSSMAG00000013958	-	69	56.559	Scophthalmus_maximus
ENSORLG00000011049	mbd4	99	58.913	ENSSDUG00000001365	mbd4	96	58.913	Seriola_dumerili
ENSORLG00000011049	mbd4	85	55.584	ENSSLDG00000010295	MBD4	81	55.584	Seriola_lalandi_dorsalis
ENSORLG00000011049	mbd4	99	54.120	ENSTRUG00000010124	mbd4	97	54.120	Takifugu_rubripes
ENSORLG00000011049	mbd4	97	51.304	ENSTNIG00000017927	mbd4	100	50.000	Tetraodon_nigroviridis
ENSORLG00000011049	mbd4	87	52.381	ENSVVUG00000014222	MBD4	60	52.381	Vulpes_vulpes
ENSORLG00000011049	mbd4	97	43.084	ENSXETG00000026622	mbd4	89	43.084	Xenopus_tropicalis
ENSORLG00000011049	mbd4	97	56.828	ENSXMAG00000021129	mbd4	98	56.828	Xiphophorus_maculatus