EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000011269 (Gene tree)
Gene ID: 101163271
Gene Symbol: rbfox1l
Alias: -
Full Name: RNA binding protein fox-1 homolog 1-like
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 12938 bases
Position: chr16:19412688-19425625
Accession: 101163271
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000027264	Fox-1_C	PF12414.8	1.2e-32	1	1
ENSORLP00000028834	Fox-1_C	PF12414.8	1.4e-32	1	1
ENSORLP00000014121	Fox-1_C	PF12414.8	7.3e-23	1	1
ENSORLP00000028834	RRM_1	PF00076.22	9.1e-18	1	1
ENSORLP00000027264	RRM_1	PF00076.22	9.3e-18	1	1
ENSORLP00000014121	RRM_1	PF00076.22	9.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000039200	-	4668	XM_004077932	ENSORLP00000027264	381 (aa)	XP_004077980	UPI0000E9CBC8
ENSORLT00000014122	-	1164	-	ENSORLP00000014121	387 (aa)	-	H2M6M4
ENSORLT00000036033	-	3856	XM_011485361	ENSORLP00000028834	380 (aa)	XP_011483663	-

Gene Model

Click here to download ENSORLG00000011269's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000011269's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000011269	rbfox1l	87	60.299	ENSORLG00000000905	rbfox3b	62	60.000
ENSORLG00000011269	rbfox1l	63	64.885	ENSORLG00000028082	rbfox2	72	58.333
ENSORLG00000011269	rbfox1l	63	61.654	ENSORLG00000014948	-	57	63.534

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000011269	rbfox1l	97	88.889	ENSAPOG00000016304	rbfox1l	98	88.889	Acanthochromis_polyacanthus
ENSORLG00000011269	rbfox1l	100	84.073	ENSACIG00000006441	rbfox1l	100	83.290	Amphilophus_citrinellus
ENSORLG00000011269	rbfox1l	88	85.928	ENSAOCG00000020938	rbfox1l	97	85.366	Amphiprion_ocellaris
ENSORLG00000011269	rbfox1l	100	89.501	ENSAPEG00000008232	rbfox1l	100	89.501	Amphiprion_percula
ENSORLG00000011269	rbfox1l	100	86.423	ENSATEG00000022649	rbfox1l	100	85.640	Anabas_testudineus
ENSORLG00000011269	rbfox1l	65	74.308	ENSACAG00000011931	-	89	75.403	Anolis_carolinensis
ENSORLG00000011269	rbfox1l	100	85.901	ENSACLG00000021394	rbfox1l	100	87.467	Astatotilapia_calliptera
ENSORLG00000011269	rbfox1l	100	83.938	ENSAMXG00000010470	rbfox1l	100	83.161	Astyanax_mexicanus
ENSORLG00000011269	rbfox1l	100	53.808	ENSCPBG00000010944	-	100	57.584	Chrysemys_picta_bellii
ENSORLG00000011269	rbfox1l	100	87.500	ENSCSEG00000018898	rbfox1l	100	86.719	Cynoglossus_semilaevis
ENSORLG00000011269	rbfox1l	100	90.289	ENSCVAG00000007986	rbfox1l	100	90.289	Cyprinodon_variegatus
ENSORLG00000011269	rbfox1l	100	80.052	ENSDARG00000021184	rbfox1l	100	79.793	Danio_rerio
ENSORLG00000011269	rbfox1l	100	79.898	ENSELUG00000015077	rbfox1l	100	81.170	Esox_lucius
ENSORLG00000011269	rbfox1l	95	95.122	ENSFHEG00000016557	rbfox1l	95	95.122	Fundulus_heteroclitus
ENSORLG00000011269	rbfox1l	100	82.507	ENSGMOG00000005040	rbfox1l	100	81.723	Gadus_morhua
ENSORLG00000011269	rbfox1l	94	87.709	ENSGAFG00000013211	rbfox1l	98	87.430	Gambusia_affinis
ENSORLG00000011269	rbfox1l	100	86.684	ENSGACG00000010757	rbfox1l	100	87.206	Gasterosteus_aculeatus
ENSORLG00000011269	rbfox1l	66	71.654	ENSGAGG00000012440	-	84	74.286	Gopherus_agassizii
ENSORLG00000011269	rbfox1l	100	85.901	ENSHBUG00000013406	rbfox1l	100	87.467	Haplochromis_burtoni
ENSORLG00000011269	rbfox1l	100	83.073	ENSHCOG00000020771	rbfox1l	100	85.677	Hippocampus_comes
ENSORLG00000011269	rbfox1l	99	82.152	ENSIPUG00000000065	rbfox1l	99	82.353	Ictalurus_punctatus
ENSORLG00000011269	rbfox1l	100	86.234	ENSKMAG00000005146	rbfox1l	100	85.455	Kryptolebias_marmoratus
ENSORLG00000011269	rbfox1l	100	88.773	ENSLBEG00000017089	rbfox1l	100	89.295	Labrus_bergylta
ENSORLG00000011269	rbfox1l	100	87.728	ENSMAMG00000019480	rbfox1l	100	87.728	Mastacembelus_armatus
ENSORLG00000011269	rbfox1l	100	85.901	ENSMZEG00005016374	rbfox1l	100	87.467	Maylandia_zebra
ENSORLG00000011269	rbfox1l	100	87.990	ENSMMOG00000016530	rbfox1l	100	87.206	Mola_mola
ENSORLG00000011269	rbfox1l	100	84.334	ENSMALG00000009384	rbfox1l	100	84.856	Monopterus_albus
ENSORLG00000011269	rbfox1l	100	88.773	ENSNBRG00000003346	rbfox1l	100	87.990	Neolamprologus_brichardi
ENSORLG00000011269	rbfox1l	100	86.423	ENSONIG00000012754	rbfox1l	100	87.990	Oreochromis_niloticus
ENSORLG00000011269	rbfox1l	100	99.213	ENSORLG00020000162	rbfox1l	100	99.213	Oryzias_latipes_hni
ENSORLG00000011269	rbfox1l	100	98.688	ENSORLG00015013464	rbfox1l	100	98.688	Oryzias_latipes_hsok
ENSORLG00000011269	rbfox1l	100	95.801	ENSOMEG00000010584	rbfox1l	100	95.801	Oryzias_melastigma
ENSORLG00000011269	rbfox1l	100	85.156	ENSPKIG00000012029	rbfox1l	100	84.635	Paramormyrops_kingsleyae
ENSORLG00000011269	rbfox1l	100	79.581	ENSPMGG00000012082	rbfox1l	100	79.581	Periophthalmus_magnuspinnatus
ENSORLG00000011269	rbfox1l	100	89.556	ENSPFOG00000009338	rbfox1l	100	89.556	Poecilia_formosa
ENSORLG00000011269	rbfox1l	86	80.122	ENSPLAG00000012816	rbfox1l	94	79.553	Poecilia_latipinna
ENSORLG00000011269	rbfox1l	100	85.640	ENSPMEG00000017597	rbfox1l	100	85.379	Poecilia_mexicana
ENSORLG00000011269	rbfox1l	100	85.901	ENSPREG00000007940	rbfox1l	100	85.640	Poecilia_reticulata
ENSORLG00000011269	rbfox1l	100	85.901	ENSPNYG00000002098	rbfox1l	100	87.467	Pundamilia_nyererei
ENSORLG00000011269	rbfox1l	100	84.496	ENSPNAG00000001620	rbfox1l	100	80.879	Pygocentrus_nattereri
ENSORLG00000011269	rbfox1l	100	79.221	ENSSFOG00015000675	rbfox1l	100	82.597	Scleropages_formosus
ENSORLG00000011269	rbfox1l	100	86.423	ENSSMAG00000013090	rbfox1l	100	86.945	Scophthalmus_maximus
ENSORLG00000011269	rbfox1l	100	84.319	ENSSDUG00000008705	rbfox1l	100	85.641	Seriola_dumerili
ENSORLG00000011269	rbfox1l	100	86.856	ENSSLDG00000022256	rbfox1l	100	85.861	Seriola_lalandi_dorsalis
ENSORLG00000011269	rbfox1l	100	90.289	ENSSPAG00000016620	rbfox1l	100	90.289	Stegastes_partitus
ENSORLG00000011269	rbfox1l	96	85.135	ENSTRUG00000015905	rbfox1l	100	84.324	Takifugu_rubripes
ENSORLG00000011269	rbfox1l	65	79.926	ENSTNIG00000008088	rbfox1l	97	82.824	Tetraodon_nigroviridis
ENSORLG00000011269	rbfox1l	100	89.295	ENSXMAG00000023471	rbfox1l	100	89.295	Xiphophorus_maculatus