EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000011482 (Gene tree)
Gene ID: 100335141
Gene Symbol: pum1
Alias: -
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 31174 bases
Position: chr11:21934162-21965335
Accession: 100335141
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000014391	PUF	PF00806.19	2.5e-69	1	8
ENSORLP00000014391	PUF	PF00806.19	2.5e-69	2	8
ENSORLP00000014391	PUF	PF00806.19	2.5e-69	3	8
ENSORLP00000014391	PUF	PF00806.19	2.5e-69	4	8
ENSORLP00000014391	PUF	PF00806.19	2.5e-69	5	8
ENSORLP00000014391	PUF	PF00806.19	2.5e-69	6	8
ENSORLP00000014391	PUF	PF00806.19	2.5e-69	7	8
ENSORLP00000014391	PUF	PF00806.19	2.5e-69	8	8
ENSORLP00000014384	PUF	PF00806.19	2.7e-69	1	8
ENSORLP00000014384	PUF	PF00806.19	2.7e-69	2	8
ENSORLP00000014384	PUF	PF00806.19	2.7e-69	3	8
ENSORLP00000014384	PUF	PF00806.19	2.7e-69	4	8
ENSORLP00000014384	PUF	PF00806.19	2.7e-69	5	8
ENSORLP00000014384	PUF	PF00806.19	2.7e-69	6	8
ENSORLP00000014384	PUF	PF00806.19	2.7e-69	7	8
ENSORLP00000014384	PUF	PF00806.19	2.7e-69	8	8
ENSORLP00000014385	PUF	PF00806.19	3.8e-69	1	8
ENSORLP00000014385	PUF	PF00806.19	3.8e-69	2	8
ENSORLP00000014385	PUF	PF00806.19	3.8e-69	3	8
ENSORLP00000014385	PUF	PF00806.19	3.8e-69	4	8
ENSORLP00000014385	PUF	PF00806.19	3.8e-69	5	8
ENSORLP00000014385	PUF	PF00806.19	3.8e-69	6	8
ENSORLP00000014385	PUF	PF00806.19	3.8e-69	7	8
ENSORLP00000014385	PUF	PF00806.19	3.8e-69	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000014392	-	3468	-	ENSORLP00000014391	1155 (aa)	-	H2M7D6
ENSORLT00000014385	-	5685	XM_004074186	ENSORLP00000014384	1166 (aa)	XP_004074234	H2M7C9
ENSORLT00000014386	-	5832	-	ENSORLP00000014385	1215 (aa)	-	H2M7D0

Gene Model

Click here to download ENSORLG00000011482's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000011482's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000011482	pum1	83	83.455	ENSORLG00000012611	pum2	89	83.373

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000011482	pum1	94	90.602	ENSG00000134644	PUM1	100	81.931	Homo_sapiens
ENSORLG00000011482	pum1	100	98.029	ENSAPOG00000021632	pum1	100	98.072	Acanthochromis_polyacanthus
ENSORLG00000011482	pum1	100	76.069	ENSAMEG00000017656	PUM1	97	74.876	Ailuropoda_melanoleuca
ENSORLG00000011482	pum1	100	97.172	ENSACIG00000021013	pum1	100	97.172	Amphilophus_citrinellus
ENSORLG00000011482	pum1	100	98.029	ENSAOCG00000003944	pum1	100	98.029	Amphiprion_ocellaris
ENSORLG00000011482	pum1	100	98.029	ENSAPEG00000014550	pum1	100	98.029	Amphiprion_percula
ENSORLG00000011482	pum1	100	97.515	ENSATEG00000016004	pum1	100	97.515	Anabas_testudineus
ENSORLG00000011482	pum1	100	76.708	ENSAPLG00000009351	PUM1	100	75.350	Anas_platyrhynchos
ENSORLG00000011482	pum1	100	76.155	ENSACAG00000000682	PUM1	98	76.568	Anolis_carolinensis
ENSORLG00000011482	pum1	94	90.361	ENSANAG00000027865	PUM1	100	81.807	Aotus_nancymaae
ENSORLG00000011482	pum1	92	97.474	ENSACLG00000019354	pum1	100	97.474	Astatotilapia_calliptera
ENSORLG00000011482	pum1	100	81.419	ENSAMXG00000020607	pum1	96	81.757	Astyanax_mexicanus
ENSORLG00000011482	pum1	94	91.084	ENSBTAG00000018979	PUM1	100	82.077	Bos_taurus
ENSORLG00000011482	pum1	94	90.602	ENSCJAG00000006035	PUM1	100	81.931	Callithrix_jacchus
ENSORLG00000011482	pum1	100	75.000	ENSCAFG00000011205	PUM1	85	89.734	Canis_familiaris
ENSORLG00000011482	pum1	87	90.602	ENSCAFG00020024616	PUM1	98	82.054	Canis_lupus_dingo
ENSORLG00000011482	pum1	94	90.602	ENSCHIG00000012952	PUM1	100	77.053	Capra_hircus
ENSORLG00000011482	pum1	100	77.056	ENSTSYG00000008868	PUM1	100	83.855	Carlito_syrichta
ENSORLG00000011482	pum1	100	75.802	ENSCPOG00000031613	PUM1	100	81.683	Cavia_porcellus
ENSORLG00000011482	pum1	94	91.084	ENSCATG00000017991	PUM1	93	93.494	Cercocebus_atys
ENSORLG00000011482	pum1	94	90.361	ENSCLAG00000007662	PUM1	100	81.683	Chinchilla_lanigera
ENSORLG00000011482	pum1	100	75.041	ENSCSAG00000001028	PUM1	100	73.775	Chlorocebus_sabaeus
ENSORLG00000011482	pum1	93	65.449	ENSCHOG00000010245	PUM1	93	67.391	Choloepus_hoffmanni
ENSORLG00000011482	pum1	100	76.359	ENSCPBG00000009288	PUM1	100	82.426	Chrysemys_picta_bellii
ENSORLG00000011482	pum1	94	90.602	ENSCANG00000042606	PUM1	100	81.931	Colobus_angolensis_palliatus
ENSORLG00000011482	pum1	100	75.763	ENSCGRG00001024949	Pum1	100	83.560	Cricetulus_griseus_chok1gshd
ENSORLG00000011482	pum1	100	75.763	ENSCGRG00000014197	Pum1	100	83.560	Cricetulus_griseus_crigri
ENSORLG00000011482	pum1	92	95.425	ENSCSEG00000015981	pum1	100	95.425	Cynoglossus_semilaevis
ENSORLG00000011482	pum1	100	96.572	ENSCVAG00000007043	pum1	100	96.572	Cyprinodon_variegatus
ENSORLG00000011482	pum1	100	83.277	ENSDARG00000099256	pum1	100	81.065	Danio_rerio
ENSORLG00000011482	pum1	100	76.379	ENSDNOG00000010939	PUM1	100	75.268	Dasypus_novemcinctus
ENSORLG00000011482	pum1	86	90.361	ENSDORG00000001875	Pum1	77	92.771	Dipodomys_ordii
ENSORLG00000011482	pum1	90	72.727	ENSETEG00000004355	PUM1	87	71.237	Echinops_telfairi
ENSORLG00000011482	pum1	100	76.194	ENSEASG00005010813	PUM1	100	74.917	Equus_asinus_asinus
ENSORLG00000011482	pum1	100	76.049	ENSECAG00000021369	PUM1	100	74.773	Equus_caballus
ENSORLG00000011482	pum1	76	90.222	ENSEEUG00000003871	PUM1	74	92.444	Erinaceus_europaeus
ENSORLG00000011482	pum1	100	88.180	ENSELUG00000002409	pum1	100	91.525	Esox_lucius
ENSORLG00000011482	pum1	94	91.084	ENSFCAG00000010374	PUM1	100	82.054	Felis_catus
ENSORLG00000011482	pum1	100	76.393	ENSFALG00000001214	PUM1	97	75.205	Ficedula_albicollis
ENSORLG00000011482	pum1	100	75.802	ENSFDAG00000011319	PUM1	100	81.683	Fukomys_damarensis
ENSORLG00000011482	pum1	100	87.953	ENSGMOG00000010491	pum1	100	90.646	Gadus_morhua
ENSORLG00000011482	pum1	96	90.141	ENSGALG00000042598	PUM1	99	91.751	Gallus_gallus
ENSORLG00000011482	pum1	100	96.829	ENSGAFG00000015617	pum1	100	96.829	Gambusia_affinis
ENSORLG00000011482	pum1	99	95.790	ENSGACG00000005717	pum1	100	95.790	Gasterosteus_aculeatus
ENSORLG00000011482	pum1	96	90.342	ENSGAGG00000001290	PUM1	99	91.952	Gopherus_agassizii
ENSORLG00000011482	pum1	94	90.602	ENSGGOG00000011983	PUM1	100	81.931	Gorilla_gorilla
ENSORLG00000011482	pum1	100	97.686	ENSHBUG00000018718	pum1	100	97.686	Haplochromis_burtoni
ENSORLG00000011482	pum1	100	75.720	ENSHGLG00000013819	Pum1	100	81.559	Heterocephalus_glaber_female
ENSORLG00000011482	pum1	100	75.720	ENSHGLG00100008621	Pum1	100	81.559	Heterocephalus_glaber_male
ENSORLG00000011482	pum1	92	88.785	ENSHCOG00000005149	pum1	100	89.439	Hippocampus_comes
ENSORLG00000011482	pum1	100	80.252	ENSIPUG00000020421	pum1	100	80.672	Ictalurus_punctatus
ENSORLG00000011482	pum1	100	76.112	ENSSTOG00000010757	PUM1	100	81.931	Ictidomys_tridecemlineatus
ENSORLG00000011482	pum1	100	76.112	ENSJJAG00000000530	Pum1	100	81.931	Jaculus_jaculus
ENSORLG00000011482	pum1	100	97.087	ENSKMAG00000003481	pum1	100	97.087	Kryptolebias_marmoratus
ENSORLG00000011482	pum1	100	96.744	ENSLBEG00000002527	pum1	100	96.744	Labrus_bergylta
ENSORLG00000011482	pum1	100	75.266	ENSLACG00000017188	PUM1	99	73.515	Latimeria_chalumnae
ENSORLG00000011482	pum1	100	81.645	ENSLOCG00000005210	pum1	99	81.645	Lepisosteus_oculatus
ENSORLG00000011482	pum1	100	76.261	ENSLAFG00000003178	PUM1	100	74.587	Loxodonta_africana
ENSORLG00000011482	pum1	94	91.084	ENSMFAG00000010291	PUM1	100	81.931	Macaca_fascicularis
ENSORLG00000011482	pum1	94	90.602	ENSMMUG00000013520	PUM1	100	81.931	Macaca_mulatta
ENSORLG00000011482	pum1	94	90.602	ENSMNEG00000034639	PUM1	100	81.931	Macaca_nemestrina
ENSORLG00000011482	pum1	94	90.602	ENSMLEG00000038743	PUM1	100	81.931	Mandrillus_leucophaeus
ENSORLG00000011482	pum1	100	97.429	ENSMAMG00000011606	pum1	100	97.429	Mastacembelus_armatus
ENSORLG00000011482	pum1	100	97.686	ENSMZEG00005005834	pum1	100	97.686	Maylandia_zebra
ENSORLG00000011482	pum1	100	76.936	ENSMGAG00000000724	PUM1	100	77.859	Meleagris_gallopavo
ENSORLG00000011482	pum1	100	75.845	ENSMAUG00000022090	Pum1	100	83.787	Mesocricetus_auratus
ENSORLG00000011482	pum1	94	90.843	ENSMICG00000007713	-	100	81.931	Microcebus_murinus
ENSORLG00000011482	pum1	94	90.385	ENSMICG00000012213	-	99	73.306	Microcebus_murinus
ENSORLG00000011482	pum1	100	75.947	ENSMOCG00000015463	Pum1	100	83.684	Microtus_ochrogaster
ENSORLG00000011482	pum1	92	97.349	ENSMMOG00000019817	pum1	100	97.349	Mola_mola
ENSORLG00000011482	pum1	100	76.135	ENSMODG00000017067	PUM1	100	75.021	Monodelphis_domestica
ENSORLG00000011482	pum1	85	98.072	ENSMALG00000016399	pum1	100	98.072	Monopterus_albus
ENSORLG00000011482	pum1	100	75.618	MGP_CAROLIEiJ_G0026549	Pum1	100	81.559	Mus_caroli
ENSORLG00000011482	pum1	100	75.618	ENSMUSG00000028580	Pum1	100	81.436	Mus_musculus
ENSORLG00000011482	pum1	100	75.535	MGP_PahariEiJ_G0028881	Pum1	100	81.436	Mus_pahari
ENSORLG00000011482	pum1	100	75.535	MGP_SPRETEiJ_G0027529	Pum1	100	81.312	Mus_spretus
ENSORLG00000011482	pum1	100	76.277	ENSMPUG00000015454	PUM1	100	74.917	Mustela_putorius_furo
ENSORLG00000011482	pum1	100	75.967	ENSMLUG00000006490	PUM1	100	74.608	Myotis_lucifugus
ENSORLG00000011482	pum1	100	76.112	ENSNGAG00000002378	Pum1	100	81.931	Nannospalax_galili
ENSORLG00000011482	pum1	79	98.250	ENSNBRG00000010689	pum1	100	98.250	Neolamprologus_brichardi
ENSORLG00000011482	pum1	94	87.470	ENSNLEG00000001151	PUM1	100	80.446	Nomascus_leucogenys
ENSORLG00000011482	pum1	74	78.448	ENSMEUG00000000976	-	67	81.749	Notamacropus_eugenii
ENSORLG00000011482	pum1	82	91.589	ENSOPRG00000001776	PUM1	76	91.589	Ochotona_princeps
ENSORLG00000011482	pum1	100	75.535	ENSODEG00000003465	PUM1	100	81.683	Octodon_degus
ENSORLG00000011482	pum1	100	98.029	ENSONIG00000002290	pum1	100	98.029	Oreochromis_niloticus
ENSORLG00000011482	pum1	86	66.616	ENSOANG00000004902	-	98	65.596	Ornithorhynchus_anatinus
ENSORLG00000011482	pum1	99	76.010	ENSOCUG00000008641	PUM1	99	74.732	Oryctolagus_cuniculus
ENSORLG00000011482	pum1	100	99.828	ENSORLG00020019461	pum1	100	99.828	Oryzias_latipes_hni
ENSORLG00000011482	pum1	100	99.828	ENSORLG00015011375	pum1	100	99.828	Oryzias_latipes_hsok
ENSORLG00000011482	pum1	85	99.036	ENSOMEG00000009312	pum1	77	99.036	Oryzias_melastigma
ENSORLG00000011482	pum1	100	73.493	ENSOGAG00000011063	PUM1	100	72.291	Otolemur_garnettii
ENSORLG00000011482	pum1	94	90.602	ENSOARG00000001899	PUM1	100	74.279	Ovis_aries
ENSORLG00000011482	pum1	94	90.602	ENSPPAG00000044003	PUM1	100	81.931	Pan_paniscus
ENSORLG00000011482	pum1	100	76.194	ENSPPRG00000001370	PUM1	100	82.054	Panthera_pardus
ENSORLG00000011482	pum1	100	76.030	ENSPTIG00000010798	PUM1	100	82.054	Panthera_tigris_altaica
ENSORLG00000011482	pum1	94	90.602	ENSPTRG00000000453	PUM1	100	81.931	Pan_troglodytes
ENSORLG00000011482	pum1	94	91.084	ENSPANG00000016338	PUM1	100	81.931	Papio_anubis
ENSORLG00000011482	pum1	94	92.530	ENSPKIG00000010578	pum1	100	77.261	Paramormyrops_kingsleyae
ENSORLG00000011482	pum1	100	76.923	ENSPSIG00000014118	PUM1	100	75.578	Pelodiscus_sinensis
ENSORLG00000011482	pum1	79	98.305	ENSPMGG00000005836	pum1	100	98.305	Periophthalmus_magnuspinnatus
ENSORLG00000011482	pum1	100	75.845	ENSPEMG00000010009	Pum1	100	83.787	Peromyscus_maniculatus_bairdii
ENSORLG00000011482	pum1	100	76.218	ENSPCIG00000014151	PUM1	100	81.953	Phascolarctos_cinereus
ENSORLG00000011482	pum1	95	96.419	ENSPFOG00000007289	pum1	99	97.531	Poecilia_formosa
ENSORLG00000011482	pum1	100	94.083	ENSPLAG00000007256	pum1	100	96.733	Poecilia_latipinna
ENSORLG00000011482	pum1	92	96.372	ENSPMEG00000019543	pum1	99	96.372	Poecilia_mexicana
ENSORLG00000011482	pum1	100	96.915	ENSPREG00000005195	pum1	100	97.458	Poecilia_reticulata
ENSORLG00000011482	pum1	100	74.637	ENSPPYG00000001621	PUM1	100	73.463	Pongo_abelii
ENSORLG00000011482	pum1	76	93.210	ENSPCAG00000001979	PUM1	73	93.210	Procavia_capensis
ENSORLG00000011482	pum1	94	90.843	ENSPCOG00000004398	PUM1	100	81.931	Propithecus_coquereli
ENSORLG00000011482	pum1	100	74.279	ENSPVAG00000005207	PUM1	97	73.080	Pteropus_vampyrus
ENSORLG00000011482	pum1	100	97.772	ENSPNYG00000009518	pum1	100	97.772	Pundamilia_nyererei
ENSORLG00000011482	pum1	100	81.841	ENSPNAG00000026728	pum1	100	82.113	Pygocentrus_nattereri
ENSORLG00000011482	pum1	100	75.783	ENSRNOG00000011709	Pum1	100	74.587	Rattus_norvegicus
ENSORLG00000011482	pum1	94	91.084	ENSRBIG00000042521	PUM1	100	81.931	Rhinopithecus_bieti
ENSORLG00000011482	pum1	94	90.602	ENSRROG00000020156	PUM1	100	81.931	Rhinopithecus_roxellana
ENSORLG00000011482	pum1	94	90.602	ENSSBOG00000032037	PUM1	100	81.931	Saimiri_boliviensis_boliviensis
ENSORLG00000011482	pum1	100	76.218	ENSSHAG00000010918	PUM1	100	75.186	Sarcophilus_harrisii
ENSORLG00000011482	pum1	100	96.401	ENSSMAG00000010918	pum1	100	98.072	Scophthalmus_maximus
ENSORLG00000011482	pum1	100	98.115	ENSSDUG00000009021	pum1	100	98.115	Seriola_dumerili
ENSORLG00000011482	pum1	95	97.893	ENSSLDG00000009667	pum1	100	97.893	Seriola_lalandi_dorsalis
ENSORLG00000011482	pum1	93	80.000	ENSSARG00000003055	PUM1	91	78.508	Sorex_araneus
ENSORLG00000011482	pum1	100	76.689	ENSSPUG00000006267	PUM1	100	75.330	Sphenodon_punctatus
ENSORLG00000011482	pum1	100	98.115	ENSSPAG00000016636	pum1	100	98.115	Stegastes_partitus
ENSORLG00000011482	pum1	100	88.531	ENSSSCG00000003591	PUM1	95	90.543	Sus_scrofa
ENSORLG00000011482	pum1	100	96.487	ENSTRUG00000013121	pum1	100	97.875	Takifugu_rubripes
ENSORLG00000011482	pum1	100	95.571	ENSTNIG00000016983	pum1	99	94.974	Tetraodon_nigroviridis
ENSORLG00000011482	pum1	87	90.244	ENSTBEG00000013810	PUM1	89	90.244	Tupaia_belangeri
ENSORLG00000011482	pum1	93	78.876	ENSTTRG00000007436	PUM1	88	77.475	Tursiops_truncatus
ENSORLG00000011482	pum1	99	74.324	ENSUAMG00000018262	-	100	73.014	Ursus_americanus
ENSORLG00000011482	pum1	94	91.084	ENSUMAG00000009211	PUM1	80	93.494	Ursus_maritimus
ENSORLG00000011482	pum1	92	83.580	ENSVPAG00000005902	PUM1	92	82.426	Vicugna_pacos
ENSORLG00000011482	pum1	94	91.084	ENSVVUG00000014631	PUM1	100	76.972	Vulpes_vulpes
ENSORLG00000011482	pum1	100	72.840	ENSXETG00000012904	pum1	99	72.218	Xenopus_tropicalis
ENSORLG00000011482	pum1	100	96.487	ENSXMAG00000002945	pum1	100	96.487	Xiphophorus_maculatus