EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000011595 (Gene tree)
Gene ID: 101169338
Gene Symbol: exosc1
Alias: -
Full Name: exosome component 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 7871 bases
Position: chr1:28379389-28387259
Accession: 101169338
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000014532	EXOSC1	PF10447.9	1.4e-15	1	1
ENSORLP00000014532	ECR1_N	PF14382.6	5.5e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000014533	-	801	XM_004066137	ENSORLP00000014532	195 (aa)	XP_004066185	H2M7S4

Gene Model

Click here to download ENSORLG00000011595's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000011595's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000011595	exosc1	98	78.646	ENSG00000171311	EXOSC1	98	78.646	Homo_sapiens
ENSORLG00000011595	exosc1	100	91.282	ENSAPOG00000007822	exosc1	100	91.282	Acanthochromis_polyacanthus
ENSORLG00000011595	exosc1	98	79.167	ENSAMEG00000000129	EXOSC1	98	79.167	Ailuropoda_melanoleuca
ENSORLG00000011595	exosc1	95	90.860	ENSACIG00000018956	exosc1	91	90.860	Amphilophus_citrinellus
ENSORLG00000011595	exosc1	100	91.282	ENSAOCG00000010699	exosc1	100	91.282	Amphiprion_ocellaris
ENSORLG00000011595	exosc1	93	81.768	ENSAPEG00000012690	exosc1	97	81.768	Amphiprion_percula
ENSORLG00000011595	exosc1	100	90.769	ENSATEG00000018683	exosc1	100	90.769	Anabas_testudineus
ENSORLG00000011595	exosc1	97	74.211	ENSACAG00000002101	EXOSC1	97	74.211	Anolis_carolinensis
ENSORLG00000011595	exosc1	98	78.646	ENSANAG00000034669	EXOSC1	98	78.646	Aotus_nancymaae
ENSORLG00000011595	exosc1	100	90.769	ENSACLG00000021243	exosc1	100	90.769	Astatotilapia_calliptera
ENSORLG00000011595	exosc1	100	87.179	ENSAMXG00000011116	exosc1	100	87.179	Astyanax_mexicanus
ENSORLG00000011595	exosc1	98	79.167	ENSBTAG00000012699	EXOSC1	98	79.167	Bos_taurus
ENSORLG00000011595	exosc1	94	33.854	WBGene00012966	exos-1	92	33.854	Caenorhabditis_elegans
ENSORLG00000011595	exosc1	98	78.125	ENSCJAG00000016586	EXOSC1	98	78.125	Callithrix_jacchus
ENSORLG00000011595	exosc1	98	78.646	ENSCAFG00000009068	EXOSC1	92	78.646	Canis_familiaris
ENSORLG00000011595	exosc1	98	78.646	ENSCAFG00020006002	EXOSC1	92	78.646	Canis_lupus_dingo
ENSORLG00000011595	exosc1	98	79.167	ENSCHIG00000015253	EXOSC1	98	79.167	Capra_hircus
ENSORLG00000011595	exosc1	98	77.604	ENSTSYG00000000760	EXOSC1	98	77.604	Carlito_syrichta
ENSORLG00000011595	exosc1	98	78.646	ENSCPOG00000001173	EXOSC1	98	78.646	Cavia_porcellus
ENSORLG00000011595	exosc1	98	41.753	ENSCCAG00000023986	EXOSC1	98	41.753	Cebus_capucinus
ENSORLG00000011595	exosc1	98	78.646	ENSCATG00000034114	EXOSC1	98	78.646	Cercocebus_atys
ENSORLG00000011595	exosc1	98	78.646	ENSCLAG00000002463	EXOSC1	98	78.646	Chinchilla_lanigera
ENSORLG00000011595	exosc1	98	78.125	ENSCSAG00000005870	EXOSC1	98	78.125	Chlorocebus_sabaeus
ENSORLG00000011595	exosc1	95	66.486	ENSCHOG00000006477	EXOSC1	98	66.486	Choloepus_hoffmanni
ENSORLG00000011595	exosc1	55	69.159	ENSCPBG00000011949	EXOSC1	88	69.159	Chrysemys_picta_bellii
ENSORLG00000011595	exosc1	99	49.485	ENSCING00000022734	-	92	49.485	Ciona_intestinalis
ENSORLG00000011595	exosc1	99	52.577	ENSCSAVG00000010865	-	98	52.577	Ciona_savignyi
ENSORLG00000011595	exosc1	98	78.646	ENSCANG00000034159	EXOSC1	98	78.646	Colobus_angolensis_palliatus
ENSORLG00000011595	exosc1	98	77.604	ENSCGRG00001000335	Exosc1	98	77.604	Cricetulus_griseus_chok1gshd
ENSORLG00000011595	exosc1	98	77.604	ENSCGRG00000011602	Exosc1	98	77.604	Cricetulus_griseus_crigri
ENSORLG00000011595	exosc1	100	76.923	ENSCSEG00000007895	exosc1	97	76.923	Cynoglossus_semilaevis
ENSORLG00000011595	exosc1	100	88.205	ENSCVAG00000016748	exosc1	100	88.205	Cyprinodon_variegatus
ENSORLG00000011595	exosc1	100	87.179	ENSDARG00000059841	exosc1	100	87.179	Danio_rerio
ENSORLG00000011595	exosc1	74	76.552	ENSDNOG00000007983	EXOSC1	98	76.552	Dasypus_novemcinctus
ENSORLG00000011595	exosc1	98	78.125	ENSDORG00000016528	Exosc1	98	78.125	Dipodomys_ordii
ENSORLG00000011595	exosc1	96	47.917	FBgn0032346	Csl4	93	47.917	Drosophila_melanogaster
ENSORLG00000011595	exosc1	98	77.083	ENSETEG00000002469	-	98	77.083	Echinops_telfairi
ENSORLG00000011595	exosc1	97	61.658	ENSEBUG00000008164	exosc1	96	61.658	Eptatretus_burgeri
ENSORLG00000011595	exosc1	98	69.792	ENSEASG00005008684	EXOSC1	98	69.792	Equus_asinus_asinus
ENSORLG00000011595	exosc1	58	58.772	ENSECAG00000010621	EXOSC1	68	58.772	Equus_caballus
ENSORLG00000011595	exosc1	98	77.604	ENSEEUG00000005647	EXOSC1	98	77.604	Erinaceus_europaeus
ENSORLG00000011595	exosc1	96	89.305	ENSELUG00000017369	exosc1	82	89.305	Esox_lucius
ENSORLG00000011595	exosc1	98	79.167	ENSFCAG00000040563	EXOSC1	92	79.167	Felis_catus
ENSORLG00000011595	exosc1	98	75.521	ENSFALG00000008450	EXOSC1	98	75.521	Ficedula_albicollis
ENSORLG00000011595	exosc1	98	79.167	ENSFDAG00000000846	EXOSC1	98	79.167	Fukomys_damarensis
ENSORLG00000011595	exosc1	100	86.667	ENSFHEG00000009154	exosc1	100	86.667	Fundulus_heteroclitus
ENSORLG00000011595	exosc1	100	89.744	ENSGMOG00000008993	exosc1	100	89.744	Gadus_morhua
ENSORLG00000011595	exosc1	98	64.583	ENSGALG00000039917	EXOSC1	99	82.192	Gallus_gallus
ENSORLG00000011595	exosc1	100	86.667	ENSGAFG00000010265	exosc1	95	86.667	Gambusia_affinis
ENSORLG00000011595	exosc1	100	88.718	ENSGACG00000018936	exosc1	100	88.718	Gasterosteus_aculeatus
ENSORLG00000011595	exosc1	98	75.521	ENSGAGG00000019192	EXOSC1	98	75.521	Gopherus_agassizii
ENSORLG00000011595	exosc1	98	67.708	ENSGGOG00000003099	EXOSC1	98	67.708	Gorilla_gorilla
ENSORLG00000011595	exosc1	100	90.769	ENSHBUG00000017857	exosc1	100	90.769	Haplochromis_burtoni
ENSORLG00000011595	exosc1	98	78.646	ENSHGLG00000016927	EXOSC1	98	78.646	Heterocephalus_glaber_female
ENSORLG00000011595	exosc1	98	78.646	ENSHGLG00100012208	EXOSC1	98	78.646	Heterocephalus_glaber_male
ENSORLG00000011595	exosc1	100	90.769	ENSHCOG00000019882	exosc1	100	90.769	Hippocampus_comes
ENSORLG00000011595	exosc1	100	85.128	ENSIPUG00000007685	exosc1	100	85.128	Ictalurus_punctatus
ENSORLG00000011595	exosc1	61	65.546	ENSSTOG00000029860	-	91	65.546	Ictidomys_tridecemlineatus
ENSORLG00000011595	exosc1	98	78.125	ENSSTOG00000006615	EXOSC1	98	78.125	Ictidomys_tridecemlineatus
ENSORLG00000011595	exosc1	98	78.646	ENSJJAG00000013311	Exosc1	98	78.646	Jaculus_jaculus
ENSORLG00000011595	exosc1	100	88.205	ENSKMAG00000001202	exosc1	82	88.205	Kryptolebias_marmoratus
ENSORLG00000011595	exosc1	100	90.256	ENSLBEG00000011448	exosc1	100	90.256	Labrus_bergylta
ENSORLG00000011595	exosc1	100	62.000	ENSLOCG00000003776	exosc1	100	62.000	Lepisosteus_oculatus
ENSORLG00000011595	exosc1	98	78.646	ENSLAFG00000015983	EXOSC1	98	78.646	Loxodonta_africana
ENSORLG00000011595	exosc1	98	78.646	ENSMFAG00000001493	EXOSC1	98	78.646	Macaca_fascicularis
ENSORLG00000011595	exosc1	98	78.646	ENSMMUG00000020028	EXOSC1	98	71.939	Macaca_mulatta
ENSORLG00000011595	exosc1	98	78.646	ENSMNEG00000029816	EXOSC1	98	78.646	Macaca_nemestrina
ENSORLG00000011595	exosc1	98	72.917	ENSMLEG00000027643	EXOSC1	98	72.917	Mandrillus_leucophaeus
ENSORLG00000011595	exosc1	100	91.795	ENSMAMG00000012200	exosc1	100	91.795	Mastacembelus_armatus
ENSORLG00000011595	exosc1	100	90.769	ENSMZEG00005007042	exosc1	100	90.769	Maylandia_zebra
ENSORLG00000011595	exosc1	98	67.708	ENSMAUG00000020462	-	98	67.708	Mesocricetus_auratus
ENSORLG00000011595	exosc1	98	78.125	ENSMICG00000007664	EXOSC1	91	78.125	Microcebus_murinus
ENSORLG00000011595	exosc1	97	72.632	ENSMOCG00000017124	-	96	72.632	Microtus_ochrogaster
ENSORLG00000011595	exosc1	98	77.604	ENSMOCG00000006004	-	98	77.604	Microtus_ochrogaster
ENSORLG00000011595	exosc1	100	67.179	ENSMMOG00000021403	exosc1	100	67.179	Mola_mola
ENSORLG00000011595	exosc1	98	78.125	ENSMODG00000004213	EXOSC1	98	78.125	Monodelphis_domestica
ENSORLG00000011595	exosc1	95	90.860	ENSMALG00000007061	exosc1	93	90.860	Monopterus_albus
ENSORLG00000011595	exosc1	98	77.083	MGP_CAROLIEiJ_G0022959	Exosc1	98	77.083	Mus_caroli
ENSORLG00000011595	exosc1	98	77.083	ENSMUSG00000034321	Exosc1	98	77.083	Mus_musculus
ENSORLG00000011595	exosc1	98	77.604	MGP_PahariEiJ_G0014449	Exosc1	98	77.604	Mus_pahari
ENSORLG00000011595	exosc1	98	77.083	MGP_SPRETEiJ_G0023880	Exosc1	98	77.083	Mus_spretus
ENSORLG00000011595	exosc1	98	79.167	ENSMPUG00000017044	EXOSC1	98	79.167	Mustela_putorius_furo
ENSORLG00000011595	exosc1	98	78.646	ENSMLUG00000009228	EXOSC1	98	78.646	Myotis_lucifugus
ENSORLG00000011595	exosc1	98	76.042	ENSNGAG00000022033	Exosc1	98	76.042	Nannospalax_galili
ENSORLG00000011595	exosc1	100	70.769	ENSNBRG00000024007	exosc1	99	70.769	Neolamprologus_brichardi
ENSORLG00000011595	exosc1	98	78.125	ENSNLEG00000013872	EXOSC1	98	78.125	Nomascus_leucogenys
ENSORLG00000011595	exosc1	57	72.321	ENSMEUG00000002246	EXOSC1	97	72.321	Notamacropus_eugenii
ENSORLG00000011595	exosc1	98	77.604	ENSOPRG00000005065	EXOSC1	98	77.604	Ochotona_princeps
ENSORLG00000011595	exosc1	98	79.167	ENSODEG00000016709	EXOSC1	98	79.167	Octodon_degus
ENSORLG00000011595	exosc1	100	90.769	ENSONIG00000017683	exosc1	99	90.769	Oreochromis_niloticus
ENSORLG00000011595	exosc1	59	86.957	ENSOANG00000006563	EXOSC1	98	84.677	Ornithorhynchus_anatinus
ENSORLG00000011595	exosc1	98	73.438	ENSOCUG00000026461	-	98	73.438	Oryctolagus_cuniculus
ENSORLG00000011595	exosc1	98	77.202	ENSOCUG00000011898	-	98	77.202	Oryctolagus_cuniculus
ENSORLG00000011595	exosc1	100	99.487	ENSORLG00020005831	exosc1	100	99.487	Oryzias_latipes_hni
ENSORLG00000011595	exosc1	100	99.487	ENSORLG00015004317	exosc1	100	99.487	Oryzias_latipes_hsok
ENSORLG00000011595	exosc1	100	82.051	ENSOMEG00000013907	exosc1	99	82.051	Oryzias_melastigma
ENSORLG00000011595	exosc1	98	77.604	ENSOGAG00000016259	EXOSC1	98	77.604	Otolemur_garnettii
ENSORLG00000011595	exosc1	98	78.646	ENSOARG00000010136	EXOSC1	98	78.646	Ovis_aries
ENSORLG00000011595	exosc1	98	72.680	ENSPPAG00000039842	EXOSC1	98	72.680	Pan_paniscus
ENSORLG00000011595	exosc1	98	79.167	ENSPPRG00000023366	EXOSC1	98	79.167	Panthera_pardus
ENSORLG00000011595	exosc1	98	79.167	ENSPTIG00000017701	EXOSC1	98	79.167	Panthera_tigris_altaica
ENSORLG00000011595	exosc1	98	78.646	ENSPTRG00000002808	EXOSC1	98	78.646	Pan_troglodytes
ENSORLG00000011595	exosc1	98	78.646	ENSPANG00000021324	EXOSC1	98	78.646	Papio_anubis
ENSORLG00000011595	exosc1	100	85.641	ENSPKIG00000016037	exosc1	100	85.641	Paramormyrops_kingsleyae
ENSORLG00000011595	exosc1	91	64.398	ENSPSIG00000013571	EXOSC1	98	77.049	Pelodiscus_sinensis
ENSORLG00000011595	exosc1	100	78.974	ENSPMGG00000014002	exosc1	100	78.974	Periophthalmus_magnuspinnatus
ENSORLG00000011595	exosc1	98	77.604	ENSPEMG00000010710	-	98	77.604	Peromyscus_maniculatus_bairdii
ENSORLG00000011595	exosc1	95	67.380	ENSPMAG00000000195	exosc1	95	67.380	Petromyzon_marinus
ENSORLG00000011595	exosc1	98	77.083	ENSPCIG00000002210	EXOSC1	97	77.083	Phascolarctos_cinereus
ENSORLG00000011595	exosc1	100	86.154	ENSPFOG00000006755	exosc1	95	86.154	Poecilia_formosa
ENSORLG00000011595	exosc1	100	86.154	ENSPLAG00000005880	exosc1	100	86.154	Poecilia_latipinna
ENSORLG00000011595	exosc1	100	86.154	ENSPMEG00000015598	exosc1	95	86.154	Poecilia_mexicana
ENSORLG00000011595	exosc1	100	74.359	ENSPREG00000000405	exosc1	94	74.359	Poecilia_reticulata
ENSORLG00000011595	exosc1	98	78.646	ENSPPYG00000002531	EXOSC1	98	78.646	Pongo_abelii
ENSORLG00000011595	exosc1	98	77.604	ENSPCAG00000009135	EXOSC1	98	77.604	Procavia_capensis
ENSORLG00000011595	exosc1	98	71.875	ENSPCOG00000027539	EXOSC1	98	71.875	Propithecus_coquereli
ENSORLG00000011595	exosc1	98	78.646	ENSPVAG00000003372	EXOSC1	98	78.646	Pteropus_vampyrus
ENSORLG00000011595	exosc1	100	90.769	ENSPNYG00000021745	exosc1	100	90.769	Pundamilia_nyererei
ENSORLG00000011595	exosc1	100	86.154	ENSPNAG00000001944	exosc1	100	86.154	Pygocentrus_nattereri
ENSORLG00000011595	exosc1	98	77.604	ENSRNOG00000048708	Exosc1	98	77.604	Rattus_norvegicus
ENSORLG00000011595	exosc1	98	78.646	ENSRBIG00000035618	EXOSC1	98	78.646	Rhinopithecus_bieti
ENSORLG00000011595	exosc1	98	78.646	ENSRROG00000032589	EXOSC1	91	78.646	Rhinopithecus_roxellana
ENSORLG00000011595	exosc1	98	78.646	ENSSBOG00000000359	EXOSC1	98	78.646	Saimiri_boliviensis_boliviensis
ENSORLG00000011595	exosc1	75	86.986	ENSSHAG00000018219	EXOSC1	99	86.986	Sarcophilus_harrisii
ENSORLG00000011595	exosc1	100	85.128	ENSSFOG00015009069	exosc1	100	85.128	Scleropages_formosus
ENSORLG00000011595	exosc1	100	84.615	ENSSFOG00015016289	-	100	84.615	Scleropages_formosus
ENSORLG00000011595	exosc1	100	91.795	ENSSMAG00000003721	exosc1	100	91.795	Scophthalmus_maximus
ENSORLG00000011595	exosc1	100	91.282	ENSSDUG00000002993	exosc1	100	91.282	Seriola_dumerili
ENSORLG00000011595	exosc1	100	91.282	ENSSLDG00000025181	exosc1	100	91.282	Seriola_lalandi_dorsalis
ENSORLG00000011595	exosc1	98	66.667	ENSSARG00000000162	EXOSC1	98	66.667	Sorex_araneus
ENSORLG00000011595	exosc1	98	73.438	ENSSPUG00000012263	EXOSC1	98	73.438	Sphenodon_punctatus
ENSORLG00000011595	exosc1	100	83.590	ENSSPAG00000016792	exosc1	83	83.590	Stegastes_partitus
ENSORLG00000011595	exosc1	98	78.125	ENSSSCG00000010518	EXOSC1	89	78.125	Sus_scrofa
ENSORLG00000011595	exosc1	98	74.479	ENSTGUG00000009692	EXOSC1	98	74.479	Taeniopygia_guttata
ENSORLG00000011595	exosc1	98	79.058	ENSTRUG00000007706	exosc1	98	79.058	Takifugu_rubripes
ENSORLG00000011595	exosc1	98	78.238	ENSTNIG00000014079	exosc1	97	78.238	Tetraodon_nigroviridis
ENSORLG00000011595	exosc1	98	73.438	ENSTBEG00000006011	EXOSC1	98	73.438	Tupaia_belangeri
ENSORLG00000011595	exosc1	94	79.891	ENSTTRG00000009887	EXOSC1	99	79.891	Tursiops_truncatus
ENSORLG00000011595	exosc1	98	63.542	ENSUAMG00000010266	EXOSC1	98	63.542	Ursus_americanus
ENSORLG00000011595	exosc1	98	63.542	ENSUMAG00000022002	EXOSC1	98	63.542	Ursus_maritimus
ENSORLG00000011595	exosc1	98	78.646	ENSVVUG00000023192	EXOSC1	62	78.646	Vulpes_vulpes
ENSORLG00000011595	exosc1	99	74.742	ENSXETG00000003434	exosc1	99	74.742	Xenopus_tropicalis
ENSORLG00000011595	exosc1	63	86.885	ENSXCOG00000014499	exosc1	93	86.885	Xiphophorus_couchianus
ENSORLG00000011595	exosc1	100	74.872	ENSXMAG00000023382	exosc1	94	74.872	Xiphophorus_maculatus