EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSORLG00000012279 (Gene tree)
Gene ID
101163935
Gene Symbol
puf60b
Alias
-
Full Name
poly(U) binding splicing factor 60
Gene Type
protein_coding
Species
Oryzias_latipes
Status
putative
Strand
Plus strand
Length
7214 bases
Position
chr20:21308310-21315523
Accession
101163935
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00000015367RRM_1PF00076.221.6e-4312
ENSORLP00000015367RRM_1PF00076.221.6e-4322
ENSORLP00000015364RRM_1PF00076.221.7e-4312
ENSORLP00000015364RRM_1PF00076.221.7e-4322
ENSORLP00000015365RRM_1PF00076.221.9e-4312
ENSORLP00000015365RRM_1PF00076.221.9e-4322
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00000015368-2535XM_023950247ENSORLP00000015367509 (aa)XP_023806015H2MA20
ENSORLT00000015365-2669XM_023950245ENSORLP00000015364513 (aa)XP_023806013H2MA17
ENSORLT00000015366-2586XM_023950244ENSORLP00000015365526 (aa)XP_023806012H2MA18
Gene Model
Click here to download ENSORLG00000012279's gene model file
Pathways
Pathway IDPathway NameSource
ola03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000012279's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSORLG00000012279puf60b5637.255ENSORLG00000011545u2af2a6939.216
ENSORLG00000012279puf60b9981.503ENSORLG00000028655-9981.503
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00000012279puf60b10084.837ENSG00000179950PUF6010085.221Homo_sapiens
ENSORLG00000012279puf60b10097.076ENSAPOG00000001713puf60b10096.768Acanthochromis_polyacanthus
ENSORLG00000012279puf60b10082.917ENSAMEG00000006406PUF609382.543Ailuropoda_melanoleuca
ENSORLG00000012279puf60b10077.626ENSACIG00000003263-9977.864Amphilophus_citrinellus
ENSORLG00000012279puf60b10097.076ENSACIG00000021705puf60b10097.076Amphilophus_citrinellus
ENSORLG00000012279puf60b10097.076ENSAOCG00000005395puf60b10097.076Amphiprion_ocellaris
ENSORLG00000012279puf60b10083.658ENSAOCG00000015558-10083.491Amphiprion_ocellaris
ENSORLG00000012279puf60b10074.806ENSAPEG00000001836-9978.884Amphiprion_percula
ENSORLG00000012279puf60b10093.124ENSAPEG00000011923puf60b10093.124Amphiprion_percula
ENSORLG00000012279puf60b10082.979ENSATEG00000006303-10082.353Anabas_testudineus
ENSORLG00000012279puf60b10097.466ENSATEG00000001730puf60b10096.768Anabas_testudineus
ENSORLG00000012279puf60b10085.221ENSAPLG00000010150PUF6010085.389Anas_platyrhynchos
ENSORLG00000012279puf60b10084.351ENSACAG00000001645PUF609784.659Anolis_carolinensis
ENSORLG00000012279puf60b10084.645ENSANAG00000018626PUF6010085.029Aotus_nancymaae
ENSORLG00000012279puf60b10097.076ENSACLG00000004462puf60b10097.076Astatotilapia_calliptera
ENSORLG00000012279puf60b10086.476ENSAMXG00000036570puf60a9887.945Astyanax_mexicanus
ENSORLG00000012279puf60b10081.214ENSAMXG00000041030puf60b10081.214Astyanax_mexicanus
ENSORLG00000012279puf60b10085.221ENSBTAG00000037493PUF609985.009Bos_taurus
ENSORLG00000012279puf60b7853.710WBGene00004389rnp-68354.704Caenorhabditis_elegans
ENSORLG00000012279puf60b10084.837ENSCJAG00000021485PUF609884.630Callithrix_jacchus
ENSORLG00000012279puf60b10084.645ENSCAFG00000001400PUF609384.440Canis_familiaris
ENSORLG00000012279puf60b10085.029ENSCAFG00020018754PUF609884.820Canis_lupus_dingo
ENSORLG00000012279puf60b10085.221ENSCHIG00000001618PUF608785.009Capra_hircus
ENSORLG00000012279puf60b10085.029ENSTSYG00000011912PUF6010085.413Carlito_syrichta
ENSORLG00000012279puf60b10080.190ENSCPOG00000014613PUF609479.849Cavia_porcellus
ENSORLG00000012279puf60b10084.837ENSCCAG00000007744PUF609884.820Cebus_capucinus
ENSORLG00000012279puf60b10084.837ENSCATG00000035405PUF609884.630Cercocebus_atys
ENSORLG00000012279puf60b10085.029ENSCLAG00000009154PUF609384.820Chinchilla_lanigera
ENSORLG00000012279puf60b10084.837ENSCSAG00000008878PUF6010085.221Chlorocebus_sabaeus
ENSORLG00000012279puf60b10085.029ENSCPBG00000005595PUF609984.774Chrysemys_picta_bellii
ENSORLG00000012279puf60b6161.994ENSCING00000002156-8761.994Ciona_intestinalis
ENSORLG00000012279puf60b9948.387ENSCING00000008436-9947.818Ciona_intestinalis
ENSORLG00000012279puf60b9748.200ENSCSAVG00000004765-9748.671Ciona_savignyi
ENSORLG00000012279puf60b9754.286ENSCSAVG00000001385-9954.155Ciona_savignyi
ENSORLG00000012279puf60b8184.123ENSCANG00000041843PUF6010084.597Colobus_angolensis_palliatus
ENSORLG00000012279puf60b10085.221ENSCGRG00001017442Puf609385.009Cricetulus_griseus_chok1gshd
ENSORLG00000012279puf60b10085.221ENSCGRG00000003717Puf609385.009Cricetulus_griseus_crigri
ENSORLG00000012279puf60b10097.271ENSCSEG00000019887puf60b9496.762Cynoglossus_semilaevis
ENSORLG00000012279puf60b9978.558ENSCSEG00000014845-9179.532Cynoglossus_semilaevis
ENSORLG00000012279puf60b9181.838ENSCVAG00000001560-9881.838Cyprinodon_variegatus
ENSORLG00000012279puf60b10097.466ENSCVAG00000009386puf60b10097.466Cyprinodon_variegatus
ENSORLG00000012279puf60b10087.048ENSDARG00000032175puf60a9991.925Danio_rerio
ENSORLG00000012279puf60b10081.214ENSDARG00000001241puf60b9998.413Danio_rerio
ENSORLG00000012279puf60b9970.428ENSDNOG00000043278PUF609070.817Dasypus_novemcinctus
ENSORLG00000012279puf60b10085.221ENSDORG00000004585Puf609585.009Dipodomys_ordii
ENSORLG00000012279puf60b7967.843FBgn0028577hfp9950.551Drosophila_melanogaster
ENSORLG00000012279puf60b9572.784ENSEBUG00000005470-9269.548Eptatretus_burgeri
ENSORLG00000012279puf60b10059.291ENSEBUG00000014291puf60b8463.636Eptatretus_burgeri
ENSORLG00000012279puf60b10085.029ENSEASG00005009695PUF609884.820Equus_asinus_asinus
ENSORLG00000012279puf60b10085.029ENSECAG00000024681PUF609884.688Equus_caballus
ENSORLG00000012279puf60b10087.786ENSELUG00000006507puf60b10084.919Esox_lucius
ENSORLG00000012279puf60b10088.588ENSELUG00000018443-10087.925Esox_lucius
ENSORLG00000012279puf60b10085.029ENSFCAG00000001045PUF6010085.413Felis_catus
ENSORLG00000012279puf60b10076.392ENSFALG00000001136PUF609877.230Ficedula_albicollis
ENSORLG00000012279puf60b10084.837ENSFDAG00000017177PUF609384.820Fukomys_damarensis
ENSORLG00000012279puf60b9682.688ENSFHEG00000021687PUF6010083.610Fundulus_heteroclitus
ENSORLG00000012279puf60b10098.246ENSFHEG00000020046puf60b10098.246Fundulus_heteroclitus
ENSORLG00000012279puf60b10082.819ENSGMOG00000006392puf60b10082.443Gadus_morhua
ENSORLG00000012279puf60b6688.921ENSGALG00000039901PUF609488.921Gallus_gallus
ENSORLG00000012279puf60b10080.583ENSGAFG00000004334-9980.698Gambusia_affinis
ENSORLG00000012279puf60b10098.635ENSGAFG00000021040puf60b10098.635Gambusia_affinis
ENSORLG00000012279puf60b10083.821ENSGACG00000004717puf60b9883.815Gasterosteus_aculeatus
ENSORLG00000012279puf60b10072.568ENSGACG00000001484-10071.790Gasterosteus_aculeatus
ENSORLG00000012279puf60b10085.029ENSGAGG00000013289PUF609384.774Gopherus_agassizii
ENSORLG00000012279puf60b10084.837ENSGGOG00000004646PUF609884.630Gorilla_gorilla
ENSORLG00000012279puf60b10097.076ENSHBUG00000015118puf60b10097.076Haplochromis_burtoni
ENSORLG00000012279puf60b10083.268ENSHBUG00000009634-10083.501Haplochromis_burtoni
ENSORLG00000012279puf60b10084.837ENSHGLG00000006111PUF609384.820Heterocephalus_glaber_female
ENSORLG00000012279puf60b10084.837ENSHGLG00100012362PUF609384.820Heterocephalus_glaber_male
ENSORLG00000012279puf60b10092.669ENSHCOG00000015541puf60b10093.258Hippocampus_comes
ENSORLG00000012279puf60b9868.577ENSHCOG00000000378-9966.541Hippocampus_comes
ENSORLG00000012279puf60b10082.576ENSIPUG00000004660puf60b9982.197Ictalurus_punctatus
ENSORLG00000012279puf60b10085.413ENSIPUG00000002453puf60a9985.605Ictalurus_punctatus
ENSORLG00000012279puf60b10085.029ENSSTOG00000025037PUF609484.820Ictidomys_tridecemlineatus
ENSORLG00000012279puf60b10085.221ENSJJAG00000001076Puf609385.009Jaculus_jaculus
ENSORLG00000012279puf60b10097.856ENSKMAG00000016745puf60b10097.856Kryptolebias_marmoratus
ENSORLG00000012279puf60b10077.735ENSKMAG00000010106-10077.927Kryptolebias_marmoratus
ENSORLG00000012279puf60b10092.982ENSLBEG00000012505puf60b10092.982Labrus_bergylta
ENSORLG00000012279puf60b7180.217ENSLACG00000005456PUF6010080.217Latimeria_chalumnae
ENSORLG00000012279puf60b10088.738ENSLOCG00000010106puf60b10088.258Lepisosteus_oculatus
ENSORLG00000012279puf60b10083.877ENSLAFG00000022929PUF609483.871Loxodonta_africana
ENSORLG00000012279puf60b10084.837ENSMFAG00000043373PUF609885.221Macaca_fascicularis
ENSORLG00000012279puf60b10084.837ENSMMUG00000013558PUF609884.630Macaca_mulatta
ENSORLG00000012279puf60b10084.837ENSMNEG00000031099PUF609884.630Macaca_nemestrina
ENSORLG00000012279puf60b10084.837ENSMLEG00000040009PUF6010085.221Mandrillus_leucophaeus
ENSORLG00000012279puf60b10095.712ENSMAMG00000010394puf60b10093.169Mastacembelus_armatus
ENSORLG00000012279puf60b10083.495ENSMAMG00000019476-10083.144Mastacembelus_armatus
ENSORLG00000012279puf60b10083.268ENSMZEG00005019425-10082.543Maylandia_zebra
ENSORLG00000012279puf60b10097.076ENSMZEG00005018515puf60b10097.076Maylandia_zebra
ENSORLG00000012279puf60b10085.221ENSMGAG00000013070PUF609589.244Meleagris_gallopavo
ENSORLG00000012279puf60b6989.444ENSMAUG00000014267-9088.525Mesocricetus_auratus
ENSORLG00000012279puf60b9667.659ENSMAUG00000018549-9570.492Mesocricetus_auratus
ENSORLG00000012279puf60b10085.029ENSMICG00000012226PUF609984.877Microcebus_murinus
ENSORLG00000012279puf60b10085.221ENSMOCG00000018780Puf609385.009Microtus_ochrogaster
ENSORLG00000012279puf60b10074.560ENSMMOG00000018059-9976.606Mola_mola
ENSORLG00000012279puf60b10097.271ENSMMOG00000004217puf60b10097.271Mola_mola
ENSORLG00000012279puf60b10084.645ENSMODG00000009161PUF609484.440Monodelphis_domestica
ENSORLG00000012279puf60b10089.084ENSMALG00000006797puf60b10088.593Monopterus_albus
ENSORLG00000012279puf60b10082.101ENSMALG00000000200-10081.404Monopterus_albus
ENSORLG00000012279puf60b10085.413MGP_CAROLIEiJ_G0019910Puf609385.389Mus_caroli
ENSORLG00000012279puf60b10085.413ENSMUSG00000002524Puf609385.389Mus_musculus
ENSORLG00000012279puf60b10085.413MGP_PahariEiJ_G0019920Puf609385.389Mus_pahari
ENSORLG00000012279puf60b10085.413MGP_SPRETEiJ_G0020812Puf609385.389Mus_spretus
ENSORLG00000012279puf60b10084.837ENSMPUG00000008137PUF609284.630Mustela_putorius_furo
ENSORLG00000012279puf60b10084.453ENSMLUG00000000238-9384.250Myotis_lucifugus
ENSORLG00000012279puf60b9980.784ENSMLUG00000013032-9881.176Myotis_lucifugus
ENSORLG00000012279puf60b10085.221ENSNGAG00000000712Puf6010085.605Nannospalax_galili
ENSORLG00000012279puf60b10083.658ENSNBRG00000017223-10082.922Neolamprologus_brichardi
ENSORLG00000012279puf60b8196.163ENSNBRG00000013047puf60b9796.163Neolamprologus_brichardi
ENSORLG00000012279puf60b10084.837ENSNLEG00000002156PUF609884.630Nomascus_leucogenys
ENSORLG00000012279puf60b7293.502ENSOPRG00000002147PUF607293.502Ochotona_princeps
ENSORLG00000012279puf60b7189.706ENSODEG00000014024-9088.728Octodon_degus
ENSORLG00000012279puf60b9863.095ENSODEG00000015513-9761.896Octodon_degus
ENSORLG00000012279puf60b10097.076ENSONIG00000006247puf60b9896.917Oreochromis_niloticus
ENSORLG00000012279puf60b10083.074ENSONIG00000014030-9982.163Oreochromis_niloticus
ENSORLG00000012279puf60b9771.600ENSOANG00000006962PUF609871.146Ornithorhynchus_anatinus
ENSORLG00000012279puf60b100100.000ENSORLG00020007333puf60100100.000Oryzias_latipes_hni
ENSORLG00000012279puf60b9982.136ENSORLG00020018144-9981.439Oryzias_latipes_hni
ENSORLG00000012279puf60b10099.621ENSORLG00015007718puf60b10099.621Oryzias_latipes_hsok
ENSORLG00000012279puf60b9982.136ENSORLG00015016833-9981.250Oryzias_latipes_hsok
ENSORLG00000012279puf60b10097.207ENSOMEG00000001643puf60b10097.207Oryzias_melastigma
ENSORLG00000012279puf60b9982.490ENSOMEG00000022185-9981.784Oryzias_melastigma
ENSORLG00000012279puf60b10085.029ENSOGAG00000006259PUF609384.820Otolemur_garnettii
ENSORLG00000012279puf60b10083.398ENSOARG00000016235PUF609883.206Ovis_aries
ENSORLG00000012279puf60b10084.837ENSPPAG00000029933PUF609983.865Pan_paniscus
ENSORLG00000012279puf60b10085.029ENSPPRG00000003257PUF6010085.413Panthera_pardus
ENSORLG00000012279puf60b10082.726ENSPTIG00000009795PUF609982.543Panthera_tigris_altaica
ENSORLG00000012279puf60b10084.837ENSPTRG00000020670PUF609983.865Pan_troglodytes
ENSORLG00000012279puf60b10084.837ENSPTRG00000043963-9884.630Pan_troglodytes
ENSORLG00000012279puf60b10084.837ENSPANG00000021936PUF609884.630Papio_anubis
ENSORLG00000012279puf60b10090.253ENSPKIG00000012204puf60b10091.033Paramormyrops_kingsleyae
ENSORLG00000012279puf60b10088.975ENSPKIG00000004295puf60a9991.343Paramormyrops_kingsleyae
ENSORLG00000012279puf60b10084.837ENSPSIG00000004679PUF609984.440Pelodiscus_sinensis
ENSORLG00000012279puf60b10094.961ENSPMGG00000013444puf60b9994.961Periophthalmus_magnuspinnatus
ENSORLG00000012279puf60b10085.221ENSPEMG00000008820Puf609385.009Peromyscus_maniculatus_bairdii
ENSORLG00000012279puf60b10085.029ENSPCIG00000020270PUF609984.499Phascolarctos_cinereus
ENSORLG00000012279puf60b10081.942ENSPFOG00000011118-10081.250Poecilia_formosa
ENSORLG00000012279puf60b10098.441ENSPFOG00000019217puf60b9998.207Poecilia_formosa
ENSORLG00000012279puf60b10082.136ENSPLAG00000017025-9281.061Poecilia_latipinna
ENSORLG00000012279puf60b10098.441ENSPLAG00000010754puf60b10098.441Poecilia_latipinna
ENSORLG00000012279puf60b10098.441ENSPMEG00000000838puf60b10098.441Poecilia_mexicana
ENSORLG00000012279puf60b10082.136ENSPMEG00000009767-9281.439Poecilia_mexicana
ENSORLG00000012279puf60b10095.825ENSPREG00000005440puf60b10096.371Poecilia_reticulata
ENSORLG00000012279puf60b8182.464ENSPPYG00000018951-9582.938Pongo_abelii
ENSORLG00000012279puf60b8184.123ENSPCAG00000014837PUF6010084.597Procavia_capensis
ENSORLG00000012279puf60b10084.837ENSPCOG00000027981PUF609984.717Propithecus_coquereli
ENSORLG00000012279puf60b10096.203ENSPVAG00000016167PUF608196.203Pteropus_vampyrus
ENSORLG00000012279puf60b10083.268ENSPNYG00000004273-10082.543Pundamilia_nyererei
ENSORLG00000012279puf60b10097.076ENSPNYG00000002556puf60b10097.076Pundamilia_nyererei
ENSORLG00000012279puf60b9887.327ENSPNAG00000019909puf60a9987.921Pygocentrus_nattereri
ENSORLG00000012279puf60b9981.854ENSPNAG00000019415puf60b9181.621Pygocentrus_nattereri
ENSORLG00000012279puf60b10085.413ENSRNOG00000009960Puf609385.389Rattus_norvegicus
ENSORLG00000012279puf60b10084.837ENSRBIG00000035274PUF609884.630Rhinopithecus_bieti
ENSORLG00000012279puf60b10084.837ENSRROG00000029360PUF609984.630Rhinopithecus_roxellana
ENSORLG00000012279puf60b10083.493ENSSBOG00000027089PUF609982.739Saimiri_boliviensis_boliviensis
ENSORLG00000012279puf60b9084.435ENSSHAG00000006668PUF609084.211Sarcophilus_harrisii
ENSORLG00000012279puf60b10082.659ENSSFOG00015019619puf60b9985.163Scleropages_formosus
ENSORLG00000012279puf60b9589.613ENSSFOG00015019371puf60a9889.613Scleropages_formosus
ENSORLG00000012279puf60b7797.980ENSSMAG00000016381puf60b7897.980Scophthalmus_maximus
ENSORLG00000012279puf60b9783.735ENSSDUG00000007048-9784.180Seriola_dumerili
ENSORLG00000012279puf60b10095.420ENSSDUG00000009935puf60b9995.420Seriola_dumerili
ENSORLG00000012279puf60b10097.466ENSSLDG00000024011puf60b10094.877Seriola_lalandi_dorsalis
ENSORLG00000012279puf60b10081.731ENSSLDG00000007366-9982.150Seriola_lalandi_dorsalis
ENSORLG00000012279puf60b6577.581ENSSPUG00000013518PUF609278.182Sphenodon_punctatus
ENSORLG00000012279puf60b10083.527ENSSPAG00000020285-10084.109Stegastes_partitus
ENSORLG00000012279puf60b10094.877ENSSPAG00000012144puf60b10094.877Stegastes_partitus
ENSORLG00000012279puf60b10085.029ENSSSCG00000038800PUF609884.314Sus_scrofa
ENSORLG00000012279puf60b10083.109ENSTGUG00000012797-10082.732Taeniopygia_guttata
ENSORLG00000012279puf60b10097.466ENSTRUG00000005420puf60b10094.877Takifugu_rubripes
ENSORLG00000012279puf60b10078.599ENSTRUG00000008843-10080.282Takifugu_rubripes
ENSORLG00000012279puf60b10097.466ENSTNIG00000013675puf60b9997.466Tetraodon_nigroviridis
ENSORLG00000012279puf60b10078.947ENSTNIG00000003069-9978.947Tetraodon_nigroviridis
ENSORLG00000012279puf60b5685.567ENSTBEG00000002751-9785.567Tupaia_belangeri
ENSORLG00000012279puf60b7765.812ENSTBEG00000001899-10067.521Tupaia_belangeri
ENSORLG00000012279puf60b10083.685ENSTTRG00000017088PUF6010084.261Tursiops_truncatus
ENSORLG00000012279puf60b10085.029ENSUAMG00000024917PUF609884.820Ursus_americanus
ENSORLG00000012279puf60b10080.038ENSUMAG00000000272PUF609379.696Ursus_maritimus
ENSORLG00000012279puf60b10085.029ENSVVUG00000022527PUF6010085.413Vulpes_vulpes
ENSORLG00000012279puf60b10083.685ENSXETG00000012469puf609983.465Xenopus_tropicalis
ENSORLG00000012279puf60b9798.387ENSXCOG00000012355puf60b10098.387Xiphophorus_couchianus
ENSORLG00000012279puf60b10098.441ENSXMAG00000001862puf60b10098.441Xiphophorus_maculatus
ENSORLG00000012279puf60b9981.349ENSXMAG00000010507-9981.151Xiphophorus_maculatus

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