EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000012286 (Gene tree)
Gene ID: 101154872
Gene Symbol: snrnp200
Alias: -
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 16955 bases
Position: chr9:18362394-18379348
Accession: 101154872
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000015378	ResIII	PF04851.15	1.3e-26	1	2
ENSORLP00000015378	ResIII	PF04851.15	1.3e-26	2	2
ENSORLP00000037971	ResIII	PF04851.15	1.3e-26	1	2
ENSORLP00000037971	ResIII	PF04851.15	1.3e-26	2	2
ENSORLP00000037971	DEAD	PF00270.29	5.4e-54	1	2
ENSORLP00000037971	DEAD	PF00270.29	5.4e-54	2	2
ENSORLP00000015378	DEAD	PF00270.29	6.1e-54	1	2
ENSORLP00000015378	DEAD	PF00270.29	6.1e-54	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000032122	-	11362	-	ENSORLP00000037971	2051 (aa)	-	-
ENSORLT00000015379	-	11109	XM_011479375	ENSORLP00000015378	2134 (aa)	XP_011477677	H2MA31
ENSORLT00000046635	-	1398	-	ENSORLP00000033569	465 (aa)	-	-

Gene Model

Click here to download ENSORLG00000012286's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000012286's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000012286	snrnp200	84	45.424	ENSORLG00000004221	ascc3	86	45.424
ENSORLG00000012286	snrnp200	69	31.306	ENSORLG00000026844	hfm1	95	31.306

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000012286	snrnp200	100	90.309	ENSG00000144028	SNRNP200	100	90.309	Homo_sapiens
ENSORLG00000012286	snrnp200	100	96.587	ENSAPOG00000010223	snrnp200	99	96.532	Acanthochromis_polyacanthus
ENSORLG00000012286	snrnp200	100	90.262	ENSAMEG00000008996	SNRNP200	100	90.262	Ailuropoda_melanoleuca
ENSORLG00000012286	snrnp200	99	96.618	ENSACIG00000001764	snrnp200	98	96.409	Amphilophus_citrinellus
ENSORLG00000012286	snrnp200	100	96.392	ENSAOCG00000024593	snrnp200	100	95.659	Amphiprion_ocellaris
ENSORLG00000012286	snrnp200	99	95.802	ENSAPEG00000012554	snrnp200	100	95.659	Amphiprion_percula
ENSORLG00000012286	snrnp200	100	96.343	ENSATEG00000022522	snrnp200	99	96.298	Anabas_testudineus
ENSORLG00000012286	snrnp200	100	90.356	ENSAPLG00000004313	SNRNP200	100	90.382	Anas_platyrhynchos
ENSORLG00000012286	snrnp200	99	89.290	ENSACAG00000000434	SNRNP200	100	89.290	Anolis_carolinensis
ENSORLG00000012286	snrnp200	100	86.875	ENSANAG00000036625	SNRNP200	100	86.688	Aotus_nancymaae
ENSORLG00000012286	snrnp200	99	95.939	ENSACLG00000011188	snrnp200	99	95.876	Astatotilapia_calliptera
ENSORLG00000012286	snrnp200	99	93.277	ENSAMXG00000005684	snrnp200	99	93.252	Astyanax_mexicanus
ENSORLG00000012286	snrnp200	100	89.934	ENSBTAG00000000848	SNRNP200	100	89.934	Bos_taurus
ENSORLG00000012286	snrnp200	100	90.309	ENSCJAG00000007514	SNRNP200	100	90.309	Callithrix_jacchus
ENSORLG00000012286	snrnp200	100	89.501	ENSCAFG00020019979	SNRNP200	100	91.424	Canis_lupus_dingo
ENSORLG00000012286	snrnp200	100	89.981	ENSCHIG00000020611	SNRNP200	100	89.981	Capra_hircus
ENSORLG00000012286	snrnp200	100	90.356	ENSTSYG00000010467	SNRNP200	100	90.356	Carlito_syrichta
ENSORLG00000012286	snrnp200	100	89.845	ENSCAPG00000017234	SNRNP200	99	89.845	Cavia_aperea
ENSORLG00000012286	snrnp200	100	90.169	ENSCPOG00000006776	SNRNP200	100	90.169	Cavia_porcellus
ENSORLG00000012286	snrnp200	100	90.309	ENSCCAG00000033962	SNRNP200	100	90.309	Cebus_capucinus
ENSORLG00000012286	snrnp200	100	90.309	ENSCATG00000015790	SNRNP200	100	90.309	Cercocebus_atys
ENSORLG00000012286	snrnp200	100	90.215	ENSCLAG00000004116	SNRNP200	100	90.215	Chinchilla_lanigera
ENSORLG00000012286	snrnp200	100	90.356	ENSCSAG00000017369	SNRNP200	100	90.356	Chlorocebus_sabaeus
ENSORLG00000012286	snrnp200	74	93.182	ENSCHOG00000012981	-	58	92.126	Choloepus_hoffmanni
ENSORLG00000012286	snrnp200	100	90.369	ENSCPBG00000022571	SNRNP200	99	93.617	Chrysemys_picta_bellii
ENSORLG00000012286	snrnp200	99	75.753	ENSCING00000005082	-	99	75.712	Ciona_intestinalis
ENSORLG00000012286	snrnp200	98	90.095	ENSCANG00000033932	SNRNP200	100	90.095	Colobus_angolensis_palliatus
ENSORLG00000012286	snrnp200	100	90.309	ENSCGRG00001022610	Snrnp200	100	90.309	Cricetulus_griseus_chok1gshd
ENSORLG00000012286	snrnp200	100	89.808	ENSCGRG00000016472	Snrnp200	100	89.808	Cricetulus_griseus_crigri
ENSORLG00000012286	snrnp200	100	94.783	ENSCSEG00000016399	snrnp200	100	94.752	Cynoglossus_semilaevis
ENSORLG00000012286	snrnp200	100	91.237	ENSCVAG00000017631	snrnp200	99	91.237	Cyprinodon_variegatus
ENSORLG00000012286	snrnp200	100	93.272	ENSDARG00000077536	snrnp200	99	93.252	Danio_rerio
ENSORLG00000012286	snrnp200	100	88.904	ENSDNOG00000011227	SNRNP200	100	88.904	Dasypus_novemcinctus
ENSORLG00000012286	snrnp200	100	87.897	ENSDORG00000005861	Snrnp200	100	87.897	Dipodomys_ordii
ENSORLG00000012286	snrnp200	100	73.582	FBgn0263599	l(3)72Ab	99	73.346	Drosophila_melanogaster
ENSORLG00000012286	snrnp200	95	89.492	ENSETEG00000000162	SNRNP200	74	89.492	Echinops_telfairi
ENSORLG00000012286	snrnp200	86	80.179	ENSEBUG00000016524	snrnp200	95	80.179	Eptatretus_burgeri
ENSORLG00000012286	snrnp200	100	89.234	ENSEASG00005001884	SNRNP200	100	89.184	Equus_asinus_asinus
ENSORLG00000012286	snrnp200	100	90.262	ENSECAG00000019675	SNRNP200	100	90.262	Equus_caballus
ENSORLG00000012286	snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSORLG00000012286	snrnp200	99	95.110	ENSELUG00000018948	snrnp200	99	94.941	Esox_lucius
ENSORLG00000012286	snrnp200	100	90.309	ENSFCAG00000010699	SNRNP200	100	90.309	Felis_catus
ENSORLG00000012286	snrnp200	95	84.905	ENSFALG00000001368	-	95	84.905	Ficedula_albicollis
ENSORLG00000012286	snrnp200	100	90.122	ENSFDAG00000004683	SNRNP200	100	90.122	Fukomys_damarensis
ENSORLG00000012286	snrnp200	100	93.674	ENSFHEG00000003786	snrnp200	99	93.674	Fundulus_heteroclitus
ENSORLG00000012286	snrnp200	100	94.060	ENSGMOG00000004881	snrnp200	99	93.826	Gadus_morhua
ENSORLG00000012286	snrnp200	100	93.486	ENSGAFG00000010807	snrnp200	99	93.486	Gambusia_affinis
ENSORLG00000012286	snrnp200	100	95.813	ENSGACG00000011474	snrnp200	99	95.512	Gasterosteus_aculeatus
ENSORLG00000012286	snrnp200	95	90.488	ENSGAGG00000016069	SNRNP200	99	90.488	Gopherus_agassizii
ENSORLG00000012286	snrnp200	100	90.309	ENSGGOG00000005174	SNRNP200	100	90.309	Gorilla_gorilla
ENSORLG00000012286	snrnp200	99	93.475	ENSHBUG00000011322	snrnp200	99	93.373	Haplochromis_burtoni
ENSORLG00000012286	snrnp200	100	90.169	ENSHGLG00000006654	SNRNP200	100	90.169	Heterocephalus_glaber_female
ENSORLG00000012286	snrnp200	100	90.169	ENSHGLG00100018594	SNRNP200	100	90.169	Heterocephalus_glaber_male
ENSORLG00000012286	snrnp200	100	90.309	ENSSTOG00000016351	SNRNP200	100	90.309	Ictidomys_tridecemlineatus
ENSORLG00000012286	snrnp200	100	90.075	ENSJJAG00000023659	Snrnp200	100	90.075	Jaculus_jaculus
ENSORLG00000012286	snrnp200	100	93.368	ENSKMAG00000003665	snrnp200	99	93.368	Kryptolebias_marmoratus
ENSORLG00000012286	snrnp200	100	96.294	ENSLBEG00000021585	snrnp200	99	96.204	Labrus_bergylta
ENSORLG00000012286	snrnp200	85	91.681	ENSLACG00000000226	SNRNP200	100	91.213	Latimeria_chalumnae
ENSORLG00000012286	snrnp200	100	93.229	ENSLOCG00000015198	snrnp200	99	93.212	Lepisosteus_oculatus
ENSORLG00000012286	snrnp200	100	90.075	ENSLAFG00000015626	SNRNP200	100	90.075	Loxodonta_africana
ENSORLG00000012286	snrnp200	100	90.262	ENSMFAG00000040174	SNRNP200	99	91.570	Macaca_fascicularis
ENSORLG00000012286	snrnp200	100	90.262	ENSMMUG00000023261	SNRNP200	100	90.262	Macaca_mulatta
ENSORLG00000012286	snrnp200	100	90.215	ENSMNEG00000032398	SNRNP200	100	90.215	Macaca_nemestrina
ENSORLG00000012286	snrnp200	100	90.309	ENSMLEG00000019083	SNRNP200	99	91.570	Mandrillus_leucophaeus
ENSORLG00000012286	snrnp200	100	95.614	ENSMAMG00000007851	snrnp200	99	95.597	Mastacembelus_armatus
ENSORLG00000012286	snrnp200	99	93.475	ENSMZEG00005010787	snrnp200	99	93.373	Maylandia_zebra
ENSORLG00000012286	snrnp200	100	90.063	ENSMGAG00000001831	SNRNP200	99	90.097	Meleagris_gallopavo
ENSORLG00000012286	snrnp200	100	90.356	ENSMAUG00000011825	Snrnp200	100	90.356	Mesocricetus_auratus
ENSORLG00000012286	snrnp200	100	90.356	ENSMICG00000004710	SNRNP200	100	90.356	Microcebus_murinus
ENSORLG00000012286	snrnp200	100	88.624	ENSMOCG00000011814	Snrnp200	100	88.624	Microtus_ochrogaster
ENSORLG00000012286	snrnp200	99	93.888	ENSMMOG00000014167	snrnp200	99	93.861	Mola_mola
ENSORLG00000012286	snrnp200	100	90.215	ENSMODG00000008475	SNRNP200	100	90.215	Monodelphis_domestica
ENSORLG00000012286	snrnp200	99	96.282	ENSMALG00000001973	snrnp200	99	96.157	Monopterus_albus
ENSORLG00000012286	snrnp200	100	90.215	MGP_CAROLIEiJ_G0024250	Snrnp200	100	90.215	Mus_caroli
ENSORLG00000012286	snrnp200	100	90.262	ENSMUSG00000003660	Snrnp200	100	90.262	Mus_musculus
ENSORLG00000012286	snrnp200	100	90.262	MGP_PahariEiJ_G0025695	Snrnp200	100	90.262	Mus_pahari
ENSORLG00000012286	snrnp200	98	92.541	MGP_SPRETEiJ_G0025170	Snrnp200	100	92.541	Mus_spretus
ENSORLG00000012286	snrnp200	100	90.309	ENSMPUG00000008949	SNRNP200	100	90.309	Mustela_putorius_furo
ENSORLG00000012286	snrnp200	100	87.172	ENSMLUG00000027511	-	100	87.172	Myotis_lucifugus
ENSORLG00000012286	snrnp200	100	89.902	ENSMLUG00000010493	SNRNP200	100	89.902	Myotis_lucifugus
ENSORLG00000012286	snrnp200	100	90.309	ENSNGAG00000021993	Snrnp200	100	90.309	Nannospalax_galili
ENSORLG00000012286	snrnp200	94	96.161	ENSNBRG00000017960	snrnp200	98	96.161	Neolamprologus_brichardi
ENSORLG00000012286	snrnp200	100	86.192	ENSNLEG00000000025	SNRNP200	100	86.192	Nomascus_leucogenys
ENSORLG00000012286	snrnp200	100	94.845	ENSMEUG00000010532	SNRNP200	79	92.381	Notamacropus_eugenii
ENSORLG00000012286	snrnp200	100	89.187	ENSOPRG00000015464	SNRNP200	100	87.032	Ochotona_princeps
ENSORLG00000012286	snrnp200	100	90.169	ENSODEG00000008366	SNRNP200	100	90.169	Octodon_degus
ENSORLG00000012286	snrnp200	99	95.841	ENSONIG00000010714	snrnp200	99	95.783	Oreochromis_niloticus
ENSORLG00000012286	snrnp200	100	90.356	ENSOCUG00000009864	SNRNP200	100	90.356	Oryctolagus_cuniculus
ENSORLG00000012286	snrnp200	100	99.766	ENSORLG00020004648	snrnp200	100	99.766	Oryzias_latipes_hni
ENSORLG00000012286	snrnp200	100	99.766	ENSORLG00015019114	snrnp200	100	99.794	Oryzias_latipes_hsok
ENSORLG00000012286	snrnp200	100	99.391	ENSOMEG00000011834	snrnp200	99	99.391	Oryzias_melastigma
ENSORLG00000012286	snrnp200	100	90.356	ENSOGAG00000006879	SNRNP200	100	90.356	Otolemur_garnettii
ENSORLG00000012286	snrnp200	100	89.284	ENSOARG00000013949	SNRNP200	100	89.284	Ovis_aries
ENSORLG00000012286	snrnp200	100	90.309	ENSPPAG00000041559	SNRNP200	100	90.309	Pan_paniscus
ENSORLG00000012286	snrnp200	100	90.309	ENSPPRG00000004435	SNRNP200	100	90.309	Panthera_pardus
ENSORLG00000012286	snrnp200	100	89.888	ENSPTIG00000006380	SNRNP200	100	89.888	Panthera_tigris_altaica
ENSORLG00000012286	snrnp200	100	90.309	ENSPTRG00000012230	SNRNP200	100	90.309	Pan_troglodytes
ENSORLG00000012286	snrnp200	100	90.262	ENSPANG00000006017	SNRNP200	100	90.262	Papio_anubis
ENSORLG00000012286	snrnp200	100	93.630	ENSPKIG00000014762	snrnp200	99	93.630	Paramormyrops_kingsleyae
ENSORLG00000012286	snrnp200	100	89.471	ENSPSIG00000008580	SNRNP200	100	89.471	Pelodiscus_sinensis
ENSORLG00000012286	snrnp200	100	90.215	ENSPCIG00000023050	SNRNP200	100	90.215	Phascolarctos_cinereus
ENSORLG00000012286	snrnp200	100	96.345	ENSPFOG00000015110	snrnp200	99	96.206	Poecilia_formosa
ENSORLG00000012286	snrnp200	99	96.641	ENSPLAG00000006711	snrnp200	99	96.480	Poecilia_latipinna
ENSORLG00000012286	snrnp200	99	96.473	ENSPMEG00000021166	snrnp200	99	96.315	Poecilia_mexicana
ENSORLG00000012286	snrnp200	100	96.246	ENSPREG00000008875	snrnp200	99	96.111	Poecilia_reticulata
ENSORLG00000012286	snrnp200	100	90.309	ENSPPYG00000012068	SNRNP200	100	90.309	Pongo_abelii
ENSORLG00000012286	snrnp200	97	93.590	ENSPCAG00000008536	SNRNP200	86	95.745	Procavia_capensis
ENSORLG00000012286	snrnp200	100	90.309	ENSPCOG00000024608	SNRNP200	100	90.309	Propithecus_coquereli
ENSORLG00000012286	snrnp200	96	90.890	ENSPVAG00000005860	SNRNP200	93	90.890	Pteropus_vampyrus
ENSORLG00000012286	snrnp200	99	91.139	ENSPNYG00000017476	snrnp200	99	91.121	Pundamilia_nyererei
ENSORLG00000012286	snrnp200	100	89.321	ENSPNAG00000010998	snrnp200	99	89.321	Pygocentrus_nattereri
ENSORLG00000012286	snrnp200	100	90.356	ENSRNOG00000012157	Snrnp200	100	90.356	Rattus_norvegicus
ENSORLG00000012286	snrnp200	100	90.309	ENSRBIG00000044690	-	100	90.309	Rhinopithecus_bieti
ENSORLG00000012286	snrnp200	100	90.309	ENSRROG00000037952	-	100	90.309	Rhinopithecus_roxellana
ENSORLG00000012286	snrnp200	100	90.309	ENSSBOG00000035471	SNRNP200	100	90.309	Saimiri_boliviensis_boliviensis
ENSORLG00000012286	snrnp200	100	90.112	ENSSHAG00000000758	SNRNP200	99	90.146	Sarcophilus_harrisii
ENSORLG00000012286	snrnp200	99	93.750	ENSSFOG00015018826	snrnp200	99	93.724	Scleropages_formosus
ENSORLG00000012286	snrnp200	100	96.490	ENSSMAG00000005463	snrnp200	99	96.517	Scophthalmus_maximus
ENSORLG00000012286	snrnp200	100	96.587	ENSSDUG00000021410	snrnp200	99	96.532	Seriola_dumerili
ENSORLG00000012286	snrnp200	100	96.392	ENSSLDG00000010884	snrnp200	99	96.345	Seriola_lalandi_dorsalis
ENSORLG00000012286	snrnp200	95	87.668	ENSSARG00000010728	SNRNP200	96	87.668	Sorex_araneus
ENSORLG00000012286	snrnp200	100	90.637	ENSSPUG00000003726	-	100	90.637	Sphenodon_punctatus
ENSORLG00000012286	snrnp200	100	96.636	ENSSPAG00000001842	snrnp200	99	96.579	Stegastes_partitus
ENSORLG00000012286	snrnp200	100	90.356	ENSSSCG00000008127	SNRNP200	100	90.356	Sus_scrofa
ENSORLG00000012286	snrnp200	99	82.086	ENSTGUG00000014475	-	100	82.086	Taeniopygia_guttata
ENSORLG00000012286	snrnp200	99	95.401	ENSTRUG00000001307	snrnp200	99	95.314	Takifugu_rubripes
ENSORLG00000012286	snrnp200	100	90.476	ENSTNIG00000004320	snrnp200	100	83.544	Tetraodon_nigroviridis
ENSORLG00000012286	snrnp200	82	93.897	ENSTBEG00000003329	-	67	93.897	Tupaia_belangeri
ENSORLG00000012286	snrnp200	100	90.075	ENSTTRG00000004983	SNRNP200	100	90.075	Tursiops_truncatus
ENSORLG00000012286	snrnp200	75	82.558	ENSUAMG00000008395	-	95	82.558	Ursus_americanus
ENSORLG00000012286	snrnp200	100	90.309	ENSUMAG00000012385	SNRNP200	100	90.309	Ursus_maritimus
ENSORLG00000012286	snrnp200	87	93.966	ENSVPAG00000006434	SNRNP200	66	93.966	Vicugna_pacos
ENSORLG00000012286	snrnp200	100	90.098	ENSVVUG00000026247	SNRNP200	100	90.098	Vulpes_vulpes
ENSORLG00000012286	snrnp200	100	89.897	ENSXETG00000001243	snrnp200	100	89.897	Xenopus_tropicalis
ENSORLG00000012286	snrnp200	99	96.510	ENSXMAG00000002058	snrnp200	98	96.356	Xiphophorus_maculatus