EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000012331 (Gene tree)
Gene ID: 101161973
Gene Symbol: ALYREF
Alias: -
Full Name: THO complex subunit 4
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 2917 bases
Position: chr8:15369980-15372896
Accession: 101161973
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000039285	RRM_1	PF00076.22	1.3e-13	1	1
ENSORLP00000015435	RRM_1	PF00076.22	1.4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000031364	ALYREF-202	771	-	ENSORLP00000039285	256 (aa)	-	-
ENSORLT00000015436	ALYREF-201	1214	XM_004071535	ENSORLP00000015435	268 (aa)	XP_004071583	H2MA86

Gene Model

Click here to download ENSORLG00000012331's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03013	RNA transport	KEGG
ola03015	mRNA surveillance pathway	KEGG
ola03040	Spliceosome	KEGG
ola05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000012331's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000012331	ALYREF	99	40.635	ENSORLG00000001620	-	58	47.642

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000012331	ALYREF	100	70.909	ENSG00000183684	ALYREF	97	68.727	Homo_sapiens
ENSORLG00000012331	ALYREF	100	82.721	ENSAPOG00000018455	ALYREF	100	90.074	Acanthochromis_polyacanthus
ENSORLG00000012331	ALYREF	74	76.263	ENSAMEG00000017463	ALYREF	74	74.742	Ailuropoda_melanoleuca
ENSORLG00000012331	ALYREF	100	65.926	ENSACAG00000010526	ALYREF	100	64.234	Anolis_carolinensis
ENSORLG00000012331	ALYREF	76	76.531	ENSANAG00000022638	-	81	71.642	Aotus_nancymaae
ENSORLG00000012331	ALYREF	100	62.409	ENSANAG00000028229	-	78	61.314	Aotus_nancymaae
ENSORLG00000012331	ALYREF	100	69.455	ENSBTAG00000008498	ALYREF	100	69.091	Bos_taurus
ENSORLG00000012331	ALYREF	100	70.803	ENSCJAG00000039942	ALYREF	97	69.091	Callithrix_jacchus
ENSORLG00000012331	ALYREF	100	69.818	ENSCAFG00000005877	ALYREF	100	69.455	Canis_familiaris
ENSORLG00000012331	ALYREF	100	69.818	ENSCAFG00020009815	ALYREF	100	69.455	Canis_lupus_dingo
ENSORLG00000012331	ALYREF	100	69.203	ENSCHIG00000017396	ALYREF	97	68.478	Capra_hircus
ENSORLG00000012331	ALYREF	72	77.297	ENSTSYG00000002272	ALYREF	75	71.795	Carlito_syrichta
ENSORLG00000012331	ALYREF	53	75.556	ENSCAPG00000014727	-	100	77.778	Cavia_aperea
ENSORLG00000012331	ALYREF	100	71.168	ENSCPOG00000013710	ALYREF	100	68.613	Cavia_porcellus
ENSORLG00000012331	ALYREF	99	61.961	ENSCCAG00000030237	-	100	59.480	Cebus_capucinus
ENSORLG00000012331	ALYREF	100	72.000	ENSCCAG00000020578	-	97	69.091	Cebus_capucinus
ENSORLG00000012331	ALYREF	100	71.636	ENSCATG00000033169	ALYREF	97	69.091	Cercocebus_atys
ENSORLG00000012331	ALYREF	100	67.159	ENSCLAG00000015026	ALYREF	100	68.359	Chinchilla_lanigera
ENSORLG00000012331	ALYREF	100	71.636	ENSCSAG00000002216	ALYREF	97	69.091	Chlorocebus_sabaeus
ENSORLG00000012331	ALYREF	79	73.892	ENSCANG00000034056	ALYREF	96	70.854	Colobus_angolensis_palliatus
ENSORLG00000012331	ALYREF	100	70.696	ENSCGRG00001018191	-	100	68.132	Cricetulus_griseus_chok1gshd
ENSORLG00000012331	ALYREF	74	75.789	ENSCGRG00000015871	-	100	65.297	Cricetulus_griseus_crigri
ENSORLG00000012331	ALYREF	73	58.081	ENSCSEG00000015438	-	98	56.566	Cynoglossus_semilaevis
ENSORLG00000012331	ALYREF	73	76.064	ENSDNOG00000002563	ALYREF	75	74.603	Dasypus_novemcinctus
ENSORLG00000012331	ALYREF	84	70.339	ENSDORG00000025849	-	73	74.346	Dipodomys_ordii
ENSORLG00000012331	ALYREF	73	75.532	ENSETEG00000016596	ALYREF	100	75.000	Echinops_telfairi
ENSORLG00000012331	ALYREF	100	69.455	ENSEASG00005005824	ALYREF	95	66.545	Equus_asinus_asinus
ENSORLG00000012331	ALYREF	100	69.455	ENSECAG00000018754	ALYREF	95	66.545	Equus_caballus
ENSORLG00000012331	ALYREF	68	70.526	ENSEEUG00000010164	ALYREF	100	68.617	Erinaceus_europaeus
ENSORLG00000012331	ALYREF	100	69.818	ENSFCAG00000022549	ALYREF	98	69.455	Felis_catus
ENSORLG00000012331	ALYREF	76	75.385	ENSFDAG00000001213	ALYREF	90	69.856	Fukomys_damarensis
ENSORLG00000012331	ALYREF	100	69.742	ENSGALG00000007237	ALYREF	100	69.742	Gallus_gallus
ENSORLG00000012331	ALYREF	100	79.554	ENSGACG00000013328	ALYREF	100	78.598	Gasterosteus_aculeatus
ENSORLG00000012331	ALYREF	100	70.000	ENSGAGG00000008536	ALYREF	100	68.613	Gopherus_agassizii
ENSORLG00000012331	ALYREF	100	71.636	ENSGGOG00000013935	ALYREF	99	68.478	Gorilla_gorilla
ENSORLG00000012331	ALYREF	100	69.853	ENSHGLG00000008293	ALYREF	100	69.343	Heterocephalus_glaber_female
ENSORLG00000012331	ALYREF	79	69.608	ENSHGLG00100006949	ALYREF	82	69.118	Heterocephalus_glaber_male
ENSORLG00000012331	ALYREF	100	84.502	ENSHCOG00000015046	ALYREF	100	81.181	Hippocampus_comes
ENSORLG00000012331	ALYREF	100	71.898	ENSJJAG00000004134	-	100	68.978	Jaculus_jaculus
ENSORLG00000012331	ALYREF	100	72.761	ENSLACG00000005694	ALYREF	100	70.956	Latimeria_chalumnae
ENSORLG00000012331	ALYREF	74	77.665	ENSLAFG00000003083	ALYREF	100	74.747	Loxodonta_africana
ENSORLG00000012331	ALYREF	100	72.119	ENSMFAG00000001394	ALYREF	97	69.517	Macaca_fascicularis
ENSORLG00000012331	ALYREF	100	71.636	ENSMMUG00000012884	ALYREF	97	69.091	Macaca_mulatta
ENSORLG00000012331	ALYREF	100	71.636	ENSMNEG00000043666	ALYREF	97	69.091	Macaca_nemestrina
ENSORLG00000012331	ALYREF	74	74.074	ENSMLEG00000043353	ALYREF	87	71.357	Mandrillus_leucophaeus
ENSORLG00000012331	ALYREF	100	67.537	ENSMAUG00000020552	-	100	63.529	Mesocricetus_auratus
ENSORLG00000012331	ALYREF	100	70.480	ENSMICG00000017403	ALYREF	97	68.248	Microcebus_murinus
ENSORLG00000012331	ALYREF	100	66.791	ENSMOCG00000016792	-	100	66.045	Microtus_ochrogaster
ENSORLG00000012331	ALYREF	99	68.864	ENSMODG00000003030	ALYREF	84	67.883	Monodelphis_domestica
ENSORLG00000012331	ALYREF	100	84.502	ENSMALG00000019408	ALYREF	100	83.026	Monopterus_albus
ENSORLG00000012331	ALYREF	100	60.223	MGP_CAROLIEiJ_G0014874	Alyref2	100	60.223	Mus_caroli
ENSORLG00000012331	ALYREF	100	71.587	MGP_CAROLIEiJ_G0017529	Alyref	100	69.231	Mus_caroli
ENSORLG00000012331	ALYREF	99	52.083	ENSMUSG00000097878	Gm8764	98	51.977	Mus_musculus
ENSORLG00000012331	ALYREF	88	58.150	ENSMUSG00000096744	Gm4307	64	56.667	Mus_musculus
ENSORLG00000012331	ALYREF	100	52.708	ENSMUSG00000086727	4931428L18Rik	100	50.903	Mus_musculus
ENSORLG00000012331	ALYREF	100	52.518	ENSMUSG00000117091	AC153137.1	100	50.542	Mus_musculus
ENSORLG00000012331	ALYREF	100	71.587	ENSMUSG00000025134	Alyref	100	69.231	Mus_musculus
ENSORLG00000012331	ALYREF	99	51.370	ENSMUSG00000090854	Gm4340	100	47.157	Mus_musculus
ENSORLG00000012331	ALYREF	99	52.083	ENSMUSG00000094144	Gm21312	100	47.811	Mus_musculus
ENSORLG00000012331	ALYREF	88	58.150	ENSMUSG00000112931	Gm4303	64	56.667	Mus_musculus
ENSORLG00000012331	ALYREF	99	52.083	ENSMUSG00000091779	Gm21293	100	47.811	Mus_musculus
ENSORLG00000012331	ALYREF	99	52.083	ENSMUSG00000097427	Gm6763	98	51.977	Mus_musculus
ENSORLG00000012331	ALYREF	99	52.083	ENSMUSG00000095022	Gm20765	100	47.811	Mus_musculus
ENSORLG00000012331	ALYREF	99	52.083	ENSMUSG00000097550	Gm21304	100	47.811	Mus_musculus
ENSORLG00000012331	ALYREF	99	62.353	ENSMUSG00000060244	Alyref2	100	62.454	Mus_musculus
ENSORLG00000012331	ALYREF	88	58.150	ENSMUSG00000112856	Gm4305	64	56.667	Mus_musculus
ENSORLG00000012331	ALYREF	88	57.709	ENSMUSG00000096640	Gm4312	64	55.909	Mus_musculus
ENSORLG00000012331	ALYREF	88	58.150	ENSMUSG00000091101	Gm4302	63	56.667	Mus_musculus
ENSORLG00000012331	ALYREF	88	57.709	ENSMUSG00000094314	Gm4301	64	55.909	Mus_musculus
ENSORLG00000012331	ALYREF	74	74.752	MGP_PahariEiJ_G0018656	-	99	71.569	Mus_pahari
ENSORLG00000012331	ALYREF	100	71.587	MGP_PahariEiJ_G0018655	-	100	69.231	Mus_pahari
ENSORLG00000012331	ALYREF	81	60.096	MGP_PahariEiJ_G0027254	-	85	57.692	Mus_pahari
ENSORLG00000012331	ALYREF	81	60.096	MGP_PahariEiJ_G0027255	-	83	58.173	Mus_pahari
ENSORLG00000012331	ALYREF	100	71.587	MGP_SPRETEiJ_G0018373	Alyref	100	69.231	Mus_spretus
ENSORLG00000012331	ALYREF	100	60.967	MGP_SPRETEiJ_G0015679	Alyref2	100	61.710	Mus_spretus
ENSORLG00000012331	ALYREF	62	64.375	MGP_SPRETEiJ_G0016590	-	56	68.613	Mus_spretus
ENSORLG00000012331	ALYREF	98	48.519	ENSMLUG00000024471	-	70	52.381	Myotis_lucifugus
ENSORLG00000012331	ALYREF	98	50.000	ENSMLUG00000022869	-	69	53.846	Myotis_lucifugus
ENSORLG00000012331	ALYREF	98	56.274	ENSMLUG00000027516	-	78	55.513	Myotis_lucifugus
ENSORLG00000012331	ALYREF	79	54.091	ENSMLUG00000028343	-	90	53.769	Myotis_lucifugus
ENSORLG00000012331	ALYREF	98	57.303	ENSMLUG00000002626	-	98	54.135	Myotis_lucifugus
ENSORLG00000012331	ALYREF	98	52.830	ENSMLUG00000025677	-	77	49.630	Myotis_lucifugus
ENSORLG00000012331	ALYREF	74	74.112	ENSMLUG00000009555	-	68	73.232	Myotis_lucifugus
ENSORLG00000012331	ALYREF	98	54.275	ENSMLUG00000026271	-	66	59.204	Myotis_lucifugus
ENSORLG00000012331	ALYREF	98	54.135	ENSMLUG00000024976	-	79	51.894	Myotis_lucifugus
ENSORLG00000012331	ALYREF	98	52.075	ENSMLUG00000030407	-	77	48.519	Myotis_lucifugus
ENSORLG00000012331	ALYREF	100	46.479	ENSMLUG00000023213	-	74	47.525	Myotis_lucifugus
ENSORLG00000012331	ALYREF	98	50.923	ENSMLUG00000024447	-	65	57.426	Myotis_lucifugus
ENSORLG00000012331	ALYREF	98	49.259	ENSMLUG00000015043	-	84	53.810	Myotis_lucifugus
ENSORLG00000012331	ALYREF	98	54.373	ENSMLUG00000027352	-	77	52.091	Myotis_lucifugus
ENSORLG00000012331	ALYREF	100	71.636	ENSNLEG00000010313	ALYREF	97	69.091	Nomascus_leucogenys
ENSORLG00000012331	ALYREF	53	71.852	ENSMEUG00000002210	ALYREF	59	77.941	Notamacropus_eugenii
ENSORLG00000012331	ALYREF	53	75.556	ENSOPRG00000005551	-	52	77.778	Ochotona_princeps
ENSORLG00000012331	ALYREF	100	68.231	ENSODEG00000008359	ALYREF	100	68.345	Octodon_degus
ENSORLG00000012331	ALYREF	90	68.724	ENSOGAG00000012409	ALYREF	76	75.263	Otolemur_garnettii
ENSORLG00000012331	ALYREF	73	74.603	ENSOARG00000017932	ALYREF	69	73.500	Ovis_aries
ENSORLG00000012331	ALYREF	100	69.818	ENSPPRG00000010829	ALYREF	98	69.455	Panthera_pardus
ENSORLG00000012331	ALYREF	66	74.118	ENSPTIG00000006399	ALYREF	73	80.851	Panthera_tigris_altaica
ENSORLG00000012331	ALYREF	100	71.636	ENSPTRG00000009774	ALYREF	97	69.091	Pan_troglodytes
ENSORLG00000012331	ALYREF	100	71.636	ENSPANG00000019265	ALYREF	97	69.091	Papio_anubis
ENSORLG00000012331	ALYREF	52	74.436	ENSPSIG00000017541	ALYREF	98	76.642	Pelodiscus_sinensis
ENSORLG00000012331	ALYREF	100	71.273	ENSPPYG00000008749	ALYREF	97	69.091	Pongo_abelii
ENSORLG00000012331	ALYREF	100	70.480	ENSPCOG00000020874	ALYREF	97	68.248	Propithecus_coquereli
ENSORLG00000012331	ALYREF	100	62.313	ENSPVAG00000017866	ALYREF	69	75.532	Pteropus_vampyrus
ENSORLG00000012331	ALYREF	68	71.429	ENSRNOG00000036687	Alyref	91	69.149	Rattus_norvegicus
ENSORLG00000012331	ALYREF	78	74.877	ENSRBIG00000039651	ALYREF	78	71.921	Rhinopithecus_bieti
ENSORLG00000012331	ALYREF	90	66.800	ENSRROG00000045364	ALYREF	80	70.370	Rhinopithecus_roxellana
ENSORLG00000012331	ALYREF	75	74.346	ENSSHAG00000010459	ALYREF	96	73.469	Sarcophilus_harrisii
ENSORLG00000012331	ALYREF	100	52.265	ENSSDUG00000003992	-	100	54.737	Seriola_dumerili
ENSORLG00000012331	ALYREF	100	53.169	ENSSLDG00000005386	-	100	49.338	Seriola_lalandi_dorsalis
ENSORLG00000012331	ALYREF	100	68.519	ENSSPUG00000004600	ALYREF	100	68.266	Sphenodon_punctatus
ENSORLG00000012331	ALYREF	100	84.249	ENSSPAG00000011178	ALYREF	97	87.546	Stegastes_partitus
ENSORLG00000012331	ALYREF	100	70.073	ENSSSCG00000032655	ALYREF	100	67.153	Sus_scrofa
ENSORLG00000012331	ALYREF	52	76.119	ENSTGUG00000003513	ALYREF	98	77.612	Taeniopygia_guttata
ENSORLG00000012331	ALYREF	100	85.926	ENSTRUG00000008828	ALYREF	100	82.593	Takifugu_rubripes
ENSORLG00000012331	ALYREF	73	74.468	ENSTBEG00000005834	ALYREF	100	75.132	Tupaia_belangeri
ENSORLG00000012331	ALYREF	100	68.000	ENSTTRG00000012275	ALYREF	100	67.636	Tursiops_truncatus
ENSORLG00000012331	ALYREF	79	62.911	ENSUAMG00000016931	ALYREF	66	65.957	Ursus_americanus
ENSORLG00000012331	ALYREF	82	59.307	ENSUMAG00000016384	ALYREF	65	65.426	Ursus_maritimus
ENSORLG00000012331	ALYREF	100	70.000	ENSXETG00000005391	alyref	100	68.148	Xenopus_tropicalis