EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000012378 (Gene tree)
Gene ID: 101172621
Gene Symbol: apex1
Alias: -
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 3578 bases
Position: chr23:10827133-10830710
Accession: 101172621
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000015494	Exo_endo_phos	PF03372.23	4.7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000015495	-	1123	XM_004082982	ENSORLP00000015494	311 (aa)	XP_004083030	H2MAE2

Gene Model

Click here to download ENSORLG00000012378's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000012378's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000012378	apex1	99	66.667	ENSG00000100823	APEX1	99	66.667	Homo_sapiens
ENSORLG00000012378	apex1	100	88.103	ENSAPOG00000017002	apex1	100	88.103	Acanthochromis_polyacanthus
ENSORLG00000012378	apex1	99	66.981	ENSAMEG00000005418	APEX1	99	66.981	Ailuropoda_melanoleuca
ENSORLG00000012378	apex1	89	91.697	ENSACIG00000010653	apex1	98	90.722	Amphilophus_citrinellus
ENSORLG00000012378	apex1	100	89.389	ENSAOCG00000009649	apex1	100	89.389	Amphiprion_ocellaris
ENSORLG00000012378	apex1	100	89.711	ENSAPEG00000021453	apex1	100	89.711	Amphiprion_percula
ENSORLG00000012378	apex1	99	92.581	ENSATEG00000002883	apex1	97	92.581	Anabas_testudineus
ENSORLG00000012378	apex1	99	68.571	ENSACAG00000008099	APEX1	99	68.571	Anolis_carolinensis
ENSORLG00000012378	apex1	80	30.164	ENSACAG00000011201	APEX2	59	30.132	Anolis_carolinensis
ENSORLG00000012378	apex1	99	67.296	ENSANAG00000030117	APEX1	99	67.296	Aotus_nancymaae
ENSORLG00000012378	apex1	88	92.000	ENSACLG00000018441	apex1	100	89.711	Astatotilapia_calliptera
ENSORLG00000012378	apex1	99	86.817	ENSAMXG00000034699	apex1	99	85.209	Astyanax_mexicanus
ENSORLG00000012378	apex1	99	65.823	ENSBTAG00000002745	APEX1	99	65.823	Bos_taurus
ENSORLG00000012378	apex1	91	43.706	WBGene00001372	exo-3	92	44.944	Caenorhabditis_elegans
ENSORLG00000012378	apex1	99	66.981	ENSCJAG00000009726	APEX1	99	67.296	Callithrix_jacchus
ENSORLG00000012378	apex1	99	67.925	ENSCAFG00000032033	APEX1	99	67.925	Canis_familiaris
ENSORLG00000012378	apex1	53	62.791	ENSCAFG00020023002	-	94	62.791	Canis_lupus_dingo
ENSORLG00000012378	apex1	99	67.925	ENSCAFG00020014377	-	99	67.925	Canis_lupus_dingo
ENSORLG00000012378	apex1	99	65.823	ENSCHIG00000007298	-	99	65.823	Capra_hircus
ENSORLG00000012378	apex1	89	56.115	ENSCHIG00000014537	-	89	56.115	Capra_hircus
ENSORLG00000012378	apex1	99	66.352	ENSTSYG00000034813	APEX1	99	66.038	Carlito_syrichta
ENSORLG00000012378	apex1	92	63.448	ENSCAPG00000016235	APEX1	91	71.186	Cavia_aperea
ENSORLG00000012378	apex1	99	67.925	ENSCPOG00000030909	APEX1	99	66.981	Cavia_porcellus
ENSORLG00000012378	apex1	99	66.981	ENSCCAG00000033056	-	99	67.296	Cebus_capucinus
ENSORLG00000012378	apex1	99	58.544	ENSCCAG00000031931	-	99	58.544	Cebus_capucinus
ENSORLG00000012378	apex1	99	66.352	ENSCATG00000015580	APEX1	99	66.352	Cercocebus_atys
ENSORLG00000012378	apex1	99	66.667	ENSCLAG00000001002	APEX1	99	66.352	Chinchilla_lanigera
ENSORLG00000012378	apex1	99	66.667	ENSCSAG00000016670	-	99	66.667	Chlorocebus_sabaeus
ENSORLG00000012378	apex1	99	66.667	ENSCSAG00000016685	-	99	66.667	Chlorocebus_sabaeus
ENSORLG00000012378	apex1	99	70.570	ENSCPBG00000009567	APEX1	99	70.570	Chrysemys_picta_bellii
ENSORLG00000012378	apex1	100	55.305	ENSCING00000008137	-	85	61.049	Ciona_intestinalis
ENSORLG00000012378	apex1	99	50.159	ENSCSAVG00000007144	-	100	55.039	Ciona_savignyi
ENSORLG00000012378	apex1	99	66.667	ENSCANG00000030726	APEX1	99	66.667	Colobus_angolensis_palliatus
ENSORLG00000012378	apex1	99	66.352	ENSCGRG00001017046	Apex1	99	66.352	Cricetulus_griseus_chok1gshd
ENSORLG00000012378	apex1	99	66.352	ENSCGRG00000008984	Apex1	99	66.352	Cricetulus_griseus_crigri
ENSORLG00000012378	apex1	100	86.817	ENSCSEG00000017499	apex1	99	86.817	Cynoglossus_semilaevis
ENSORLG00000012378	apex1	100	91.961	ENSCVAG00000022075	apex1	100	91.961	Cyprinodon_variegatus
ENSORLG00000012378	apex1	99	85.484	ENSDARG00000045843	apex1	99	85.484	Danio_rerio
ENSORLG00000012378	apex1	99	63.522	ENSDNOG00000042234	APEX1	94	63.522	Dasypus_novemcinctus
ENSORLG00000012378	apex1	99	66.667	ENSDORG00000001616	Apex1	99	66.667	Dipodomys_ordii
ENSORLG00000012378	apex1	99	67.296	ENSETEG00000004855	-	99	67.296	Echinops_telfairi
ENSORLG00000012378	apex1	76	60.084	ENSEBUG00000000622	-	92	60.084	Eptatretus_burgeri
ENSORLG00000012378	apex1	99	67.610	ENSEASG00005017489	APEX1	73	66.981	Equus_asinus_asinus
ENSORLG00000012378	apex1	99	67.610	ENSECAG00000022325	APEX1	81	66.981	Equus_caballus
ENSORLG00000012378	apex1	86	70.632	ENSEEUG00000012569	APEX1	93	70.522	Erinaceus_europaeus
ENSORLG00000012378	apex1	99	84.887	ENSELUG00000021706	apex1	99	86.817	Esox_lucius
ENSORLG00000012378	apex1	99	67.296	ENSFCAG00000030869	APEX1	99	67.296	Felis_catus
ENSORLG00000012378	apex1	99	68.239	ENSFDAG00000006120	APEX1	99	67.296	Fukomys_damarensis
ENSORLG00000012378	apex1	100	91.961	ENSFHEG00000009031	apex1	83	91.961	Fundulus_heteroclitus
ENSORLG00000012378	apex1	100	78.778	ENSGMOG00000007943	apex1	99	78.778	Gadus_morhua
ENSORLG00000012378	apex1	100	91.640	ENSGAFG00000005311	apex1	100	91.640	Gambusia_affinis
ENSORLG00000012378	apex1	100	89.389	ENSGACG00000019497	apex1	99	90.226	Gasterosteus_aculeatus
ENSORLG00000012378	apex1	99	70.570	ENSGAGG00000014999	APEX1	99	70.570	Gopherus_agassizii
ENSORLG00000012378	apex1	99	66.352	ENSGGOG00000002128	APEX1	99	66.352	Gorilla_gorilla
ENSORLG00000012378	apex1	100	89.389	ENSHBUG00000005894	apex1	100	89.389	Haplochromis_burtoni
ENSORLG00000012378	apex1	99	68.239	ENSHGLG00000002848	APEX1	99	66.981	Heterocephalus_glaber_female
ENSORLG00000012378	apex1	99	68.239	ENSHGLG00100017878	APEX1	99	66.981	Heterocephalus_glaber_male
ENSORLG00000012378	apex1	100	89.103	ENSHCOG00000009961	apex1	100	87.179	Hippocampus_comes
ENSORLG00000012378	apex1	99	83.601	ENSIPUG00000005799	apex1	99	83.601	Ictalurus_punctatus
ENSORLG00000012378	apex1	99	67.610	ENSSTOG00000010096	APEX1	99	67.296	Ictidomys_tridecemlineatus
ENSORLG00000012378	apex1	89	62.724	ENSJJAG00000020465	-	89	62.590	Jaculus_jaculus
ENSORLG00000012378	apex1	99	59.119	ENSJJAG00000003660	-	99	59.119	Jaculus_jaculus
ENSORLG00000012378	apex1	99	66.038	ENSJJAG00000012067	-	99	66.038	Jaculus_jaculus
ENSORLG00000012378	apex1	100	89.711	ENSKMAG00000021171	apex1	100	89.711	Kryptolebias_marmoratus
ENSORLG00000012378	apex1	100	90.354	ENSLBEG00000010248	apex1	100	90.354	Labrus_bergylta
ENSORLG00000012378	apex1	99	74.038	ENSLACG00000008617	APEX1	87	79.927	Latimeria_chalumnae
ENSORLG00000012378	apex1	99	78.025	ENSLOCG00000015516	apex1	99	77.389	Lepisosteus_oculatus
ENSORLG00000012378	apex1	89	72.043	ENSLAFG00000021872	APEX1	99	67.089	Loxodonta_africana
ENSORLG00000012378	apex1	99	65.732	ENSMFAG00000002565	APEX1	99	66.352	Macaca_fascicularis
ENSORLG00000012378	apex1	99	65.732	ENSMMUG00000048039	APEX1	99	66.352	Macaca_mulatta
ENSORLG00000012378	apex1	99	66.044	ENSMNEG00000036944	APEX1	99	66.352	Macaca_nemestrina
ENSORLG00000012378	apex1	99	66.352	ENSMLEG00000042125	APEX1	99	66.352	Mandrillus_leucophaeus
ENSORLG00000012378	apex1	100	92.283	ENSMAMG00000023526	apex1	100	92.283	Mastacembelus_armatus
ENSORLG00000012378	apex1	88	92.000	ENSMZEG00005014187	apex1	100	89.711	Maylandia_zebra
ENSORLG00000012378	apex1	99	66.562	ENSMAUG00000013994	Apex1	99	65.931	Mesocricetus_auratus
ENSORLG00000012378	apex1	99	66.352	ENSMICG00000043554	APEX1	99	66.352	Microcebus_murinus
ENSORLG00000012378	apex1	99	67.296	ENSMOCG00000013721	Apex1	99	67.296	Microtus_ochrogaster
ENSORLG00000012378	apex1	100	86.859	ENSMMOG00000010031	apex1	97	88.141	Mola_mola
ENSORLG00000012378	apex1	89	70.609	ENSMODG00000007125	APEX1	99	65.000	Monodelphis_domestica
ENSORLG00000012378	apex1	90	84.286	ENSMALG00000011699	apex1	79	83.618	Monopterus_albus
ENSORLG00000012378	apex1	99	67.823	MGP_CAROLIEiJ_G0019209	Apex1	99	67.823	Mus_caroli
ENSORLG00000012378	apex1	99	67.610	ENSMUSG00000035960	Apex1	99	67.610	Mus_musculus
ENSORLG00000012378	apex1	99	67.610	MGP_PahariEiJ_G0030232	Apex1	99	67.610	Mus_pahari
ENSORLG00000012378	apex1	99	67.610	MGP_SPRETEiJ_G0020101	Apex1	99	67.610	Mus_spretus
ENSORLG00000012378	apex1	99	66.250	ENSMLUG00000028957	APEX1	99	66.250	Myotis_lucifugus
ENSORLG00000012378	apex1	87	53.047	ENSNGAG00000021748	-	85	53.047	Nannospalax_galili
ENSORLG00000012378	apex1	99	67.296	ENSNGAG00000002725	-	99	66.352	Nannospalax_galili
ENSORLG00000012378	apex1	88	92.000	ENSNBRG00000005334	apex1	91	89.711	Neolamprologus_brichardi
ENSORLG00000012378	apex1	99	66.559	ENSNLEG00000010839	APEX1	99	66.559	Nomascus_leucogenys
ENSORLG00000012378	apex1	99	66.561	ENSMEUG00000014519	APEX1	99	65.924	Notamacropus_eugenii
ENSORLG00000012378	apex1	99	66.562	ENSOPRG00000014029	APEX1	99	66.562	Ochotona_princeps
ENSORLG00000012378	apex1	99	67.296	ENSODEG00000001703	-	99	66.981	Octodon_degus
ENSORLG00000012378	apex1	93	52.055	ENSODEG00000004777	-	83	58.103	Octodon_degus
ENSORLG00000012378	apex1	99	52.469	ENSODEG00000006583	-	86	54.577	Octodon_degus
ENSORLG00000012378	apex1	95	90.169	ENSONIG00000012089	apex1	100	89.711	Oreochromis_niloticus
ENSORLG00000012378	apex1	88	70.182	ENSOANG00000008836	APEX1	80	64.596	Ornithorhynchus_anatinus
ENSORLG00000012378	apex1	99	67.296	ENSOCUG00000005022	APEX1	99	67.296	Oryctolagus_cuniculus
ENSORLG00000012378	apex1	100	100.000	ENSORLG00020021371	apex1	100	100.000	Oryzias_latipes_hni
ENSORLG00000012378	apex1	100	100.000	ENSORLG00015020089	apex1	100	100.000	Oryzias_latipes_hsok
ENSORLG00000012378	apex1	100	96.785	ENSOMEG00000018876	apex1	100	96.785	Oryzias_melastigma
ENSORLG00000012378	apex1	89	64.158	ENSOGAG00000029355	-	88	64.029	Otolemur_garnettii
ENSORLG00000012378	apex1	99	67.925	ENSOGAG00000013335	-	99	67.925	Otolemur_garnettii
ENSORLG00000012378	apex1	99	66.139	ENSOARG00000019740	-	99	66.139	Ovis_aries
ENSORLG00000012378	apex1	98	56.452	ENSOARG00000014424	-	93	55.305	Ovis_aries
ENSORLG00000012378	apex1	96	62.745	ENSOARG00000001876	-	99	62.745	Ovis_aries
ENSORLG00000012378	apex1	99	66.881	ENSPPAG00000038760	APEX1	99	66.881	Pan_paniscus
ENSORLG00000012378	apex1	99	67.296	ENSPPRG00000011794	APEX1	99	67.296	Panthera_pardus
ENSORLG00000012378	apex1	99	67.296	ENSPTIG00000014829	APEX1	99	67.296	Panthera_tigris_altaica
ENSORLG00000012378	apex1	99	66.881	ENSPTRG00000006093	APEX1	99	66.881	Pan_troglodytes
ENSORLG00000012378	apex1	99	66.352	ENSPANG00000022757	APEX1	99	66.352	Papio_anubis
ENSORLG00000012378	apex1	89	86.957	ENSPKIG00000003504	apex1	99	85.256	Paramormyrops_kingsleyae
ENSORLG00000012378	apex1	77	84.100	ENSPMGG00000016596	apex1	79	77.323	Periophthalmus_magnuspinnatus
ENSORLG00000012378	apex1	99	66.981	ENSPEMG00000019097	Apex1	99	66.981	Peromyscus_maniculatus_bairdii
ENSORLG00000012378	apex1	93	72.509	ENSPMAG00000007275	-	94	74.007	Petromyzon_marinus
ENSORLG00000012378	apex1	89	69.892	ENSPCIG00000023274	APEX1	86	70.803	Phascolarctos_cinereus
ENSORLG00000012378	apex1	100	91.961	ENSPFOG00000004178	apex1	100	91.961	Poecilia_formosa
ENSORLG00000012378	apex1	100	91.640	ENSPLAG00000012779	apex1	100	91.640	Poecilia_latipinna
ENSORLG00000012378	apex1	100	91.961	ENSPMEG00000019623	apex1	100	91.961	Poecilia_mexicana
ENSORLG00000012378	apex1	100	90.354	ENSPREG00000014298	apex1	99	90.354	Poecilia_reticulata
ENSORLG00000012378	apex1	99	66.352	ENSPPYG00000005565	APEX1	99	66.352	Pongo_abelii
ENSORLG00000012378	apex1	99	65.094	ENSPCAG00000010376	APEX1	99	65.094	Procavia_capensis
ENSORLG00000012378	apex1	99	66.667	ENSPCOG00000021564	APEX1	99	66.667	Propithecus_coquereli
ENSORLG00000012378	apex1	99	66.250	ENSPVAG00000010736	APEX1	87	71.223	Pteropus_vampyrus
ENSORLG00000012378	apex1	88	92.364	ENSPNYG00000023940	apex1	100	90.032	Pundamilia_nyererei
ENSORLG00000012378	apex1	92	86.411	ENSPNAG00000020897	apex1	96	86.364	Pygocentrus_nattereri
ENSORLG00000012378	apex1	99	66.981	ENSRNOG00000009663	Apex1	99	66.981	Rattus_norvegicus
ENSORLG00000012378	apex1	99	66.667	ENSRBIG00000038325	APEX1	98	66.667	Rhinopithecus_bieti
ENSORLG00000012378	apex1	99	66.981	ENSSBOG00000018921	-	99	67.296	Saimiri_boliviensis_boliviensis
ENSORLG00000012378	apex1	99	59.807	ENSSBOG00000031372	-	99	58.095	Saimiri_boliviensis_boliviensis
ENSORLG00000012378	apex1	99	63.889	ENSSHAG00000013524	APEX1	85	70.036	Sarcophilus_harrisii
ENSORLG00000012378	apex1	99	80.064	ENSSFOG00015001948	apex1	99	82.637	Scleropages_formosus
ENSORLG00000012378	apex1	100	86.984	ENSSMAG00000013348	apex1	100	87.619	Scophthalmus_maximus
ENSORLG00000012378	apex1	100	91.318	ENSSDUG00000016377	apex1	99	91.318	Seriola_dumerili
ENSORLG00000012378	apex1	100	91.318	ENSSLDG00000023005	apex1	100	91.318	Seriola_lalandi_dorsalis
ENSORLG00000012378	apex1	90	74.643	ENSSPUG00000000531	APEX1	93	75.000	Sphenodon_punctatus
ENSORLG00000012378	apex1	100	88.424	ENSSPAG00000000458	apex1	100	88.424	Stegastes_partitus
ENSORLG00000012378	apex1	95	40.924	ENSSSCG00000039705	-	89	42.960	Sus_scrofa
ENSORLG00000012378	apex1	99	66.981	ENSSSCG00000040060	-	99	66.981	Sus_scrofa
ENSORLG00000012378	apex1	76	59.574	ENSTGUG00000014378	APEX1	100	59.574	Taeniopygia_guttata
ENSORLG00000012378	apex1	100	84.026	ENSTRUG00000004268	apex1	95	84.984	Takifugu_rubripes
ENSORLG00000012378	apex1	100	85.852	ENSTNIG00000005778	apex1	100	85.852	Tetraodon_nigroviridis
ENSORLG00000012378	apex1	99	64.151	ENSTBEG00000006405	APEX1	99	64.151	Tupaia_belangeri
ENSORLG00000012378	apex1	76	70.213	ENSTTRG00000007860	APEX1	100	70.213	Tursiops_truncatus
ENSORLG00000012378	apex1	99	66.667	ENSUAMG00000010457	APEX1	99	66.667	Ursus_americanus
ENSORLG00000012378	apex1	99	66.667	ENSUMAG00000009178	APEX1	99	66.667	Ursus_maritimus
ENSORLG00000012378	apex1	76	65.532	ENSVPAG00000005083	APEX1	100	65.532	Vicugna_pacos
ENSORLG00000012378	apex1	99	67.610	ENSVVUG00000009010	APEX1	99	67.610	Vulpes_vulpes
ENSORLG00000012378	apex1	99	69.524	ENSXETG00000024773	apex1	99	68.889	Xenopus_tropicalis
ENSORLG00000012378	apex1	100	91.640	ENSXCOG00000015233	apex1	99	91.640	Xiphophorus_couchianus
ENSORLG00000012378	apex1	100	91.640	ENSXMAG00000006195	apex1	100	91.640	Xiphophorus_maculatus