EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000012479 (Gene tree)
Gene ID: 101163248
Gene Symbol: usb1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 6888 bases
Position: chr6:23975578-23982465
Accession: 101163248
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000015620	HVSL	PF09749.9	5.6e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000015621	-	2879	XM_023955951	ENSORLP00000015620	272 (aa)	XP_023811719	H2MAR0

Gene Model

Click here to download ENSORLG00000012479's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000012479's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000012479	usb1	83	50.439	ENSG00000103005	USB1	100	51.869	Homo_sapiens
ENSORLG00000012479	usb1	100	72.143	ENSAPOG00000011942	usb1	100	71.786	Acanthochromis_polyacanthus
ENSORLG00000012479	usb1	82	50.446	ENSAMEG00000017205	USB1	83	50.446	Ailuropoda_melanoleuca
ENSORLG00000012479	usb1	88	73.770	ENSACIG00000012234	usb1	90	73.770	Amphilophus_citrinellus
ENSORLG00000012479	usb1	99	71.174	ENSAOCG00000014831	usb1	87	77.143	Amphiprion_ocellaris
ENSORLG00000012479	usb1	99	71.174	ENSAPEG00000000296	usb1	87	77.143	Amphiprion_percula
ENSORLG00000012479	usb1	99	70.357	ENSATEG00000009348	usb1	92	72.201	Anabas_testudineus
ENSORLG00000012479	usb1	82	54.222	ENSAPLG00000002756	USB1	99	54.222	Anas_platyrhynchos
ENSORLG00000012479	usb1	82	49.778	ENSACAG00000015481	USB1	98	49.778	Anolis_carolinensis
ENSORLG00000012479	usb1	83	49.561	ENSANAG00000035640	USB1	86	49.561	Aotus_nancymaae
ENSORLG00000012479	usb1	95	71.429	ENSACLG00000020586	usb1	91	71.984	Astatotilapia_calliptera
ENSORLG00000012479	usb1	82	63.393	ENSAMXG00000040146	usb1	74	63.393	Astyanax_mexicanus
ENSORLG00000012479	usb1	99	45.756	ENSBTAG00000015758	USB1	94	46.586	Bos_taurus
ENSORLG00000012479	usb1	83	50.439	ENSCJAG00000011733	USB1	94	47.791	Callithrix_jacchus
ENSORLG00000012479	usb1	99	44.444	ENSCAFG00000008556	USB1	62	47.639	Canis_familiaris
ENSORLG00000012479	usb1	99	45.185	ENSCAFG00020009263	USB1	84	49.776	Canis_lupus_dingo
ENSORLG00000012479	usb1	99	45.387	ENSCHIG00000024290	USB1	94	46.185	Capra_hircus
ENSORLG00000012479	usb1	83	49.123	ENSTSYG00000006997	USB1	94	46.586	Carlito_syrichta
ENSORLG00000012479	usb1	85	40.693	ENSCAPG00000009057	USB1	99	40.693	Cavia_aperea
ENSORLG00000012479	usb1	99	45.985	ENSCPOG00000014325	USB1	86	49.784	Cavia_porcellus
ENSORLG00000012479	usb1	83	50.000	ENSCCAG00000022132	USB1	86	50.000	Cebus_capucinus
ENSORLG00000012479	usb1	83	50.439	ENSCATG00000032174	USB1	94	47.791	Cercocebus_atys
ENSORLG00000012479	usb1	63	50.867	ENSCLAG00000007363	USB1	87	52.941	Chinchilla_lanigera
ENSORLG00000012479	usb1	83	50.439	ENSCSAG00000004783	USB1	94	47.791	Chlorocebus_sabaeus
ENSORLG00000012479	usb1	86	52.542	ENSCPBG00000026943	USB1	87	51.653	Chrysemys_picta_bellii
ENSORLG00000012479	usb1	82	31.760	ENSCING00000011490	-	87	31.466	Ciona_intestinalis
ENSORLG00000012479	usb1	82	31.140	ENSCSAVG00000000894	-	83	31.140	Ciona_savignyi
ENSORLG00000012479	usb1	83	51.327	ENSCANG00000037135	USB1	94	48.193	Colobus_angolensis_palliatus
ENSORLG00000012479	usb1	99	46.691	ENSCGRG00001011243	USB1	84	51.339	Cricetulus_griseus_chok1gshd
ENSORLG00000012479	usb1	99	46.691	ENSCGRG00000013252	USB1	84	51.339	Cricetulus_griseus_crigri
ENSORLG00000012479	usb1	99	65.693	ENSCSEG00000013881	usb1	99	65.693	Cynoglossus_semilaevis
ENSORLG00000012479	usb1	82	74.449	ENSCVAG00000009252	usb1	97	74.449	Cyprinodon_variegatus
ENSORLG00000012479	usb1	82	61.161	ENSDARG00000003841	usb1	81	61.161	Danio_rerio
ENSORLG00000012479	usb1	99	45.387	ENSDORG00000001888	Usb1	85	50.000	Dipodomys_ordii
ENSORLG00000012479	usb1	75	41.262	FBgn0037713	CG16790	78	40.000	Drosophila_melanogaster
ENSORLG00000012479	usb1	99	39.338	ENSETEG00000019682	USB1	84	42.411	Echinops_telfairi
ENSORLG00000012479	usb1	85	44.828	ENSEBUG00000005889	usb1	81	44.828	Eptatretus_burgeri
ENSORLG00000012479	usb1	99	47.059	ENSEASG00005005484	USB1	85	50.893	Equus_asinus_asinus
ENSORLG00000012479	usb1	99	46.691	ENSECAG00000019493	USB1	77	50.673	Equus_caballus
ENSORLG00000012479	usb1	63	46.821	ENSEEUG00000000154	USB1	58	47.712	Erinaceus_europaeus
ENSORLG00000012479	usb1	86	64.407	ENSELUG00000010974	usb1	86	64.407	Esox_lucius
ENSORLG00000012479	usb1	89	47.521	ENSFCAG00000002693	USB1	89	47.521	Felis_catus
ENSORLG00000012479	usb1	84	53.913	ENSFALG00000006876	USB1	92	51.429	Ficedula_albicollis
ENSORLG00000012479	usb1	99	46.863	ENSFDAG00000010052	USB1	87	49.785	Fukomys_damarensis
ENSORLG00000012479	usb1	88	66.803	ENSFHEG00000012334	usb1	83	73.077	Fundulus_heteroclitus
ENSORLG00000012479	usb1	82	70.404	ENSGMOG00000004228	usb1	100	70.404	Gadus_morhua
ENSORLG00000012479	usb1	81	54.260	ENSGALG00000035604	USB1	88	54.464	Gallus_gallus
ENSORLG00000012479	usb1	100	71.739	ENSGAFG00000021890	usb1	99	71.739	Gambusia_affinis
ENSORLG00000012479	usb1	99	68.841	ENSGACG00000003257	usb1	99	68.841	Gasterosteus_aculeatus
ENSORLG00000012479	usb1	99	50.370	ENSGAGG00000022572	USB1	82	56.054	Gopherus_agassizii
ENSORLG00000012479	usb1	83	50.877	ENSGGOG00000017147	USB1	94	48.193	Gorilla_gorilla
ENSORLG00000012479	usb1	95	71.429	ENSHBUG00000009823	usb1	91	71.984	Haplochromis_burtoni
ENSORLG00000012479	usb1	99	46.494	ENSHGLG00000016078	USB1	82	50.224	Heterocephalus_glaber_female
ENSORLG00000012479	usb1	99	46.494	ENSHGLG00100005562	USB1	82	50.224	Heterocephalus_glaber_male
ENSORLG00000012479	usb1	80	72.936	ENSHCOG00000015633	usb1	87	73.214	Hippocampus_comes
ENSORLG00000012479	usb1	99	54.167	ENSIPUG00000008601	usb1	79	61.233	Ictalurus_punctatus
ENSORLG00000012479	usb1	82	51.339	ENSSTOG00000007548	USB1	82	51.339	Ictidomys_tridecemlineatus
ENSORLG00000012479	usb1	99	47.426	ENSJJAG00000021859	Usb1	84	51.339	Jaculus_jaculus
ENSORLG00000012479	usb1	90	77.143	ENSKMAG00000007200	usb1	87	77.143	Kryptolebias_marmoratus
ENSORLG00000012479	usb1	95	65.267	ENSLBEG00000008452	usb1	79	67.194	Labrus_bergylta
ENSORLG00000012479	usb1	80	50.224	ENSLACG00000000105	USB1	76	51.121	Latimeria_chalumnae
ENSORLG00000012479	usb1	99	50.178	ENSLOCG00000000465	usb1	79	57.589	Lepisosteus_oculatus
ENSORLG00000012479	usb1	99	39.928	ENSLAFG00000002267	USB1	84	41.702	Loxodonta_africana
ENSORLG00000012479	usb1	83	50.439	ENSMFAG00000003926	USB1	94	47.791	Macaca_fascicularis
ENSORLG00000012479	usb1	83	50.439	ENSMMUG00000022669	USB1	94	47.791	Macaca_mulatta
ENSORLG00000012479	usb1	83	50.000	ENSMNEG00000042487	USB1	94	47.390	Macaca_nemestrina
ENSORLG00000012479	usb1	83	50.439	ENSMLEG00000028756	USB1	94	47.791	Mandrillus_leucophaeus
ENSORLG00000012479	usb1	99	70.758	ENSMAMG00000015092	usb1	99	70.758	Mastacembelus_armatus
ENSORLG00000012479	usb1	95	71.429	ENSMZEG00005010008	usb1	91	71.984	Maylandia_zebra
ENSORLG00000012479	usb1	99	47.794	ENSMAUG00000007832	Usb1	84	51.339	Mesocricetus_auratus
ENSORLG00000012479	usb1	82	51.339	ENSMICG00000004900	USB1	93	46.693	Microcebus_murinus
ENSORLG00000012479	usb1	99	48.529	ENSMOCG00000022647	Usb1	84	51.786	Microtus_ochrogaster
ENSORLG00000012479	usb1	82	73.661	ENSMMOG00000000490	usb1	87	73.661	Mola_mola
ENSORLG00000012479	usb1	79	52.093	ENSMODG00000014067	USB1	84	51.786	Monodelphis_domestica
ENSORLG00000012479	usb1	100	69.858	ENSMALG00000005930	usb1	93	72.031	Monopterus_albus
ENSORLG00000012479	usb1	99	48.162	MGP_CAROLIEiJ_G0031421	Usb1	99	49.107	Mus_caroli
ENSORLG00000012479	usb1	99	47.794	ENSMUSG00000031792	Usb1	99	49.107	Mus_musculus
ENSORLG00000012479	usb1	99	48.529	MGP_PahariEiJ_G0023019	Usb1	100	50.427	Mus_pahari
ENSORLG00000012479	usb1	99	48.162	MGP_SPRETEiJ_G0032540	Usb1	85	50.877	Mus_spretus
ENSORLG00000012479	usb1	89	46.939	ENSMPUG00000004684	USB1	88	46.939	Mustela_putorius_furo
ENSORLG00000012479	usb1	82	51.786	ENSMLUG00000007400	USB1	97	51.786	Myotis_lucifugus
ENSORLG00000012479	usb1	99	48.175	ENSNGAG00000009703	Usb1	83	52.679	Nannospalax_galili
ENSORLG00000012479	usb1	95	65.251	ENSNBRG00000008747	usb1	100	74.299	Neolamprologus_brichardi
ENSORLG00000012479	usb1	76	51.675	ENSNLEG00000003340	USB1	91	45.652	Nomascus_leucogenys
ENSORLG00000012479	usb1	99	47.970	ENSODEG00000016214	USB1	85	51.982	Octodon_degus
ENSORLG00000012479	usb1	99	70.357	ENSONIG00000011063	usb1	91	73.047	Oreochromis_niloticus
ENSORLG00000012479	usb1	85	49.785	ENSOANG00000012118	USB1	97	49.785	Ornithorhynchus_anatinus
ENSORLG00000012479	usb1	100	96.691	ENSORLG00020018671	usb1	100	96.691	Oryzias_latipes_hni
ENSORLG00000012479	usb1	100	98.162	ENSORLG00015009679	usb1	100	98.162	Oryzias_latipes_hsok
ENSORLG00000012479	usb1	93	90.588	ENSOMEG00000012930	usb1	100	88.406	Oryzias_melastigma
ENSORLG00000012479	usb1	82	48.214	ENSOGAG00000003273	USB1	83	48.214	Otolemur_garnettii
ENSORLG00000012479	usb1	91	46.614	ENSOARG00000001107	USB1	96	46.614	Ovis_aries
ENSORLG00000012479	usb1	83	50.439	ENSPPAG00000042137	USB1	94	47.791	Pan_paniscus
ENSORLG00000012479	usb1	89	45.749	ENSPPRG00000024797	USB1	97	44.574	Panthera_pardus
ENSORLG00000012479	usb1	89	46.694	ENSPTIG00000007506	USB1	89	46.694	Panthera_tigris_altaica
ENSORLG00000012479	usb1	83	47.807	ENSPTRG00000008172	USB1	100	52.336	Pan_troglodytes
ENSORLG00000012479	usb1	83	50.439	ENSPANG00000025138	USB1	94	47.791	Papio_anubis
ENSORLG00000012479	usb1	82	62.222	ENSPKIG00000015109	usb1	76	62.222	Paramormyrops_kingsleyae
ENSORLG00000012479	usb1	82	43.096	ENSPSIG00000004305	USB1	100	43.096	Pelodiscus_sinensis
ENSORLG00000012479	usb1	99	60.741	ENSPMGG00000017725	usb1	97	60.741	Periophthalmus_magnuspinnatus
ENSORLG00000012479	usb1	99	45.756	ENSPEMG00000016183	Usb1	82	50.446	Peromyscus_maniculatus_bairdii
ENSORLG00000012479	usb1	82	50.667	ENSPMAG00000000462	usb1	95	50.667	Petromyzon_marinus
ENSORLG00000012479	usb1	100	71.841	ENSPFOG00000011130	usb1	87	76.349	Poecilia_formosa
ENSORLG00000012479	usb1	100	71.480	ENSPLAG00000009820	usb1	87	75.934	Poecilia_latipinna
ENSORLG00000012479	usb1	100	71.841	ENSPMEG00000006402	usb1	99	71.841	Poecilia_mexicana
ENSORLG00000012479	usb1	88	70.902	ENSPREG00000001047	usb1	99	72.131	Poecilia_reticulata
ENSORLG00000012479	usb1	76	49.048	ENSPPYG00000007401	USB1	92	46.320	Pongo_abelii
ENSORLG00000012479	usb1	82	50.446	ENSPCOG00000022612	USB1	94	44.177	Propithecus_coquereli
ENSORLG00000012479	usb1	99	45.756	ENSPVAG00000004613	USB1	86	49.107	Pteropus_vampyrus
ENSORLG00000012479	usb1	100	67.376	ENSPNYG00000022262	usb1	91	71.984	Pundamilia_nyererei
ENSORLG00000012479	usb1	86	61.441	ENSPNAG00000011736	usb1	80	61.441	Pygocentrus_nattereri
ENSORLG00000012479	usb1	99	48.529	ENSRNOG00000013216	Usb1	84	51.786	Rattus_norvegicus
ENSORLG00000012479	usb1	83	47.807	ENSRBIG00000044466	USB1	100	51.869	Rhinopithecus_bieti
ENSORLG00000012479	usb1	83	50.439	ENSRROG00000029211	USB1	94	47.791	Rhinopithecus_roxellana
ENSORLG00000012479	usb1	93	47.244	ENSSBOG00000029362	USB1	94	47.791	Saimiri_boliviensis_boliviensis
ENSORLG00000012479	usb1	80	49.315	ENSSHAG00000006993	USB1	89	50.446	Sarcophilus_harrisii
ENSORLG00000012479	usb1	83	63.717	ENSSFOG00015023663	usb1	71	63.717	Scleropages_formosus
ENSORLG00000012479	usb1	94	68.635	ENSSMAG00000015834	usb1	92	68.635	Scophthalmus_maximus
ENSORLG00000012479	usb1	84	79.039	ENSSDUG00000002949	usb1	85	79.039	Seriola_dumerili
ENSORLG00000012479	usb1	88	77.824	ENSSLDG00000014174	usb1	85	77.824	Seriola_lalandi_dorsalis
ENSORLG00000012479	usb1	78	52.804	ENSSPUG00000006741	USB1	100	52.804	Sphenodon_punctatus
ENSORLG00000012479	usb1	99	71.479	ENSSPAG00000007484	usb1	86	77.778	Stegastes_partitus
ENSORLG00000012479	usb1	99	46.715	ENSSSCG00000002807	USB1	92	47.082	Sus_scrofa
ENSORLG00000012479	usb1	77	56.398	ENSTGUG00000004792	USB1	83	56.398	Taeniopygia_guttata
ENSORLG00000012479	usb1	99	69.373	ENSTRUG00000021069	usb1	91	71.951	Takifugu_rubripes
ENSORLG00000012479	usb1	99	59.041	ENSTNIG00000000626	usb1	83	65.022	Tetraodon_nigroviridis
ENSORLG00000012479	usb1	82	36.607	ENSTBEG00000001507	USB1	97	36.607	Tupaia_belangeri
ENSORLG00000012479	usb1	82	50.893	ENSUAMG00000016823	USB1	93	47.390	Ursus_americanus
ENSORLG00000012479	usb1	78	50.935	ENSUMAG00000021369	USB1	100	50.935	Ursus_maritimus
ENSORLG00000012479	usb1	99	44.444	ENSVVUG00000023700	USB1	98	45.455	Vulpes_vulpes
ENSORLG00000012479	usb1	78	55.140	ENSXETG00000013795	usb1	89	54.260	Xenopus_tropicalis
ENSORLG00000012479	usb1	88	75.934	ENSXMAG00000024687	usb1	81	70.612	Xiphophorus_maculatus