EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000012510 (Gene tree)
Gene ID: 101169634
Gene Symbol: tomm20a
Alias: -
Full Name: AT-rich interaction domain 4B
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 41266 bases
Position: chr15:28208531-28249796
Accession: 101169634
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000015667	Tudor-knot	PF11717.8	1.3e-10	1	1
ENSORLP00000042709	Tudor-knot	PF11717.8	1.3e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000015668	-	4029	-	ENSORLP00000015667	1289 (aa)	-	H2MAV6
ENSORLT00000028171	-	4718	XM_011484712	ENSORLP00000028254	1228 (aa)	XP_011483014	-
ENSORLT00000029759	-	4901	XM_011484709	ENSORLP00000042709	1289 (aa)	XP_011483011	UPI0005CC1ECD

Gene Model

Click here to download ENSORLG00000012510's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000012510's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000012510	tomm20a	89	57.021	ENSG00000054267	ARID4B	94	70.087	Homo_sapiens
ENSORLG00000012510	tomm20a	100	81.069	ENSAPOG00000010823	tomm20a	100	81.255	Acanthochromis_polyacanthus
ENSORLG00000012510	tomm20a	92	87.351	ENSACIG00000006313	tomm20a	100	87.351	Amphilophus_citrinellus
ENSORLG00000012510	tomm20a	100	80.763	ENSAOCG00000003330	tomm20a	100	80.949	Amphiprion_ocellaris
ENSORLG00000012510	tomm20a	100	80.992	ENSAPEG00000024018	tomm20a	100	81.178	Amphiprion_percula
ENSORLG00000012510	tomm20a	100	79.008	ENSATEG00000014930	tomm20a	100	79.084	Anabas_testudineus
ENSORLG00000012510	tomm20a	93	75.120	ENSAPLG00000004422	ARID4B	88	73.684	Anas_platyrhynchos
ENSORLG00000012510	tomm20a	52	59.167	ENSACAG00000001289	ARID4B	99	51.542	Anolis_carolinensis
ENSORLG00000012510	tomm20a	54	61.172	ENSANAG00000038088	ARID4B	100	52.061	Aotus_nancymaae
ENSORLG00000012510	tomm20a	93	77.512	ENSACLG00000023521	tomm20a	100	75.837	Astatotilapia_calliptera
ENSORLG00000012510	tomm20a	81	74.434	ENSAMXG00000003657	tomm20a	90	73.529	Astyanax_mexicanus
ENSORLG00000012510	tomm20a	54	61.286	ENSBTAG00000000222	ARID4B	100	52.246	Bos_taurus
ENSORLG00000012510	tomm20a	54	61.370	ENSCJAG00000018055	ARID4B	100	52.498	Callithrix_jacchus
ENSORLG00000012510	tomm20a	99	51.310	ENSCHIG00000020742	ARID4B	100	50.909	Capra_hircus
ENSORLG00000012510	tomm20a	54	61.286	ENSTSYG00000010028	ARID4B	55	61.801	Carlito_syrichta
ENSORLG00000012510	tomm20a	53	61.233	ENSCPOG00000034766	ARID4B	99	51.347	Cavia_porcellus
ENSORLG00000012510	tomm20a	54	60.709	ENSCCAG00000021520	ARID4B	100	52.133	Cebus_capucinus
ENSORLG00000012510	tomm20a	54	60.870	ENSCATG00000042166	ARID4B	100	52.457	Cercocebus_atys
ENSORLG00000012510	tomm20a	100	51.482	ENSCSAG00000010069	ARID4B	100	52.647	Chlorocebus_sabaeus
ENSORLG00000012510	tomm20a	100	50.036	ENSCANG00000027498	ARID4B	100	50.763	Colobus_angolensis_palliatus
ENSORLG00000012510	tomm20a	99	75.580	ENSCSEG00000012928	tomm20a	100	75.973	Cynoglossus_semilaevis
ENSORLG00000012510	tomm20a	100	76.169	ENSCVAG00000003244	tomm20a	100	76.835	Cyprinodon_variegatus
ENSORLG00000012510	tomm20a	100	63.921	ENSDARG00000090656	tomm20a	100	63.374	Danio_rerio
ENSORLG00000012510	tomm20a	99	52.869	ENSDORG00000006422	Arid4b	100	52.023	Dipodomys_ordii
ENSORLG00000012510	tomm20a	69	52.870	ENSELUG00000018441	tomm20a	94	52.698	Esox_lucius
ENSORLG00000012510	tomm20a	99	51.601	ENSFDAG00000014194	ARID4B	99	52.218	Fukomys_damarensis
ENSORLG00000012510	tomm20a	100	76.771	ENSFHEG00000003798	tomm20a	100	76.923	Fundulus_heteroclitus
ENSORLG00000012510	tomm20a	90	72.157	ENSGMOG00000018747	tomm20a	93	73.993	Gadus_morhua
ENSORLG00000012510	tomm20a	99	73.860	ENSGACG00000004298	tomm20a	100	74.715	Gasterosteus_aculeatus
ENSORLG00000012510	tomm20a	54	61.012	ENSGGOG00000022080	ARID4B	100	52.422	Gorilla_gorilla
ENSORLG00000012510	tomm20a	100	76.970	ENSHBUG00000020369	tomm20a	100	77.659	Haplochromis_burtoni
ENSORLG00000012510	tomm20a	98	79.258	ENSHCOG00000010376	tomm20a	100	77.948	Hippocampus_comes
ENSORLG00000012510	tomm20a	100	60.274	ENSIPUG00000014234	arid4b	100	61.234	Ictalurus_punctatus
ENSORLG00000012510	tomm20a	52	60.221	ENSJJAG00000021368	Arid4b	55	61.717	Jaculus_jaculus
ENSORLG00000012510	tomm20a	91	72.857	ENSKMAG00000010987	tomm20a	100	75.476	Kryptolebias_marmoratus
ENSORLG00000012510	tomm20a	100	59.834	ENSLOCG00000015899	tomm20a	100	60.998	Lepisosteus_oculatus
ENSORLG00000012510	tomm20a	53	61.149	ENSLAFG00000014295	ARID4B	99	52.471	Loxodonta_africana
ENSORLG00000012510	tomm20a	54	61.392	ENSMFAG00000044016	ARID4B	100	52.457	Macaca_fascicularis
ENSORLG00000012510	tomm20a	54	61.392	ENSMMUG00000007141	ARID4B	100	52.457	Macaca_mulatta
ENSORLG00000012510	tomm20a	53	61.295	ENSMLEG00000033583	ARID4B	100	52.360	Mandrillus_leucophaeus
ENSORLG00000012510	tomm20a	93	77.157	ENSMAMG00000017134	tomm20a	99	77.558	Mastacembelus_armatus
ENSORLG00000012510	tomm20a	100	77.047	ENSMZEG00005009879	tomm20a	100	77.735	Maylandia_zebra
ENSORLG00000012510	tomm20a	100	52.673	ENSMICG00000016358	ARID4B	100	52.457	Microcebus_murinus
ENSORLG00000012510	tomm20a	93	82.895	ENSMMOG00000000561	tomm20a	100	82.675	Mola_mola
ENSORLG00000012510	tomm20a	100	78.931	ENSMALG00000005205	tomm20a	100	79.173	Monopterus_albus
ENSORLG00000012510	tomm20a	100	53.102	MGP_CAROLIEiJ_G0018236	Arid4b	100	52.890	Mus_caroli
ENSORLG00000012510	tomm20a	100	52.446	ENSMUSG00000039219	Arid4b	100	52.347	Mus_musculus
ENSORLG00000012510	tomm20a	100	53.218	MGP_PahariEiJ_G0019286	Arid4b	100	52.967	Mus_pahari
ENSORLG00000012510	tomm20a	100	52.666	MGP_SPRETEiJ_G0019094	Arid4b	100	52.639	Mus_spretus
ENSORLG00000012510	tomm20a	93	84.798	ENSNBRG00000019684	tomm20a	100	85.986	Neolamprologus_brichardi
ENSORLG00000012510	tomm20a	54	61.255	ENSNLEG00000002665	ARID4B	100	52.426	Nomascus_leucogenys
ENSORLG00000012510	tomm20a	100	51.988	ENSODEG00000005373	ARID4B	100	52.357	Octodon_degus
ENSORLG00000012510	tomm20a	92	97.368	ENSORLG00020013988	tomm20a	100	97.368	Oryzias_latipes_hni
ENSORLG00000012510	tomm20a	92	97.596	ENSORLG00015022835	tomm20a	100	97.596	Oryzias_latipes_hsok
ENSORLG00000012510	tomm20a	100	92.475	ENSOMEG00000000521	tomm20a	100	92.320	Oryzias_melastigma
ENSORLG00000012510	tomm20a	53	58.491	ENSOGAG00000012476	ARID4B	56	58.760	Otolemur_garnettii
ENSORLG00000012510	tomm20a	99	52.451	ENSOARG00000003481	ARID4B	97	52.589	Ovis_aries
ENSORLG00000012510	tomm20a	54	60.792	ENSPPAG00000031651	ARID4B	100	52.240	Pan_paniscus
ENSORLG00000012510	tomm20a	100	52.495	ENSPPRG00000013739	ARID4B	100	52.967	Panthera_pardus
ENSORLG00000012510	tomm20a	100	53.010	ENSPTIG00000012520	ARID4B	100	53.343	Panthera_tigris_altaica
ENSORLG00000012510	tomm20a	54	60.792	ENSPTRG00000002129	ARID4B	100	52.312	Pan_troglodytes
ENSORLG00000012510	tomm20a	53	60.137	ENSPANG00000013611	ARID4B	99	52.064	Papio_anubis
ENSORLG00000012510	tomm20a	100	52.345	ENSPCIG00000029756	ARID4B	100	52.193	Phascolarctos_cinereus
ENSORLG00000012510	tomm20a	100	77.913	ENSPFOG00000019430	tomm20a	100	78.294	Poecilia_formosa
ENSORLG00000012510	tomm20a	100	78.065	ENSPLAG00000010554	tomm20a	100	78.446	Poecilia_latipinna
ENSORLG00000012510	tomm20a	100	75.913	ENSPMEG00000003093	tomm20a	100	72.511	Poecilia_mexicana
ENSORLG00000012510	tomm20a	100	76.947	ENSPREG00000007996	tomm20a	100	78.168	Poecilia_reticulata
ENSORLG00000012510	tomm20a	54	60.929	ENSPPYG00000000098	ARID4B	100	52.384	Pongo_abelii
ENSORLG00000012510	tomm20a	75	61.549	ENSPVAG00000015159	ARID4B	100	51.927	Pteropus_vampyrus
ENSORLG00000012510	tomm20a	99	71.571	ENSPNYG00000013988	tomm20a	100	72.720	Pundamilia_nyererei
ENSORLG00000012510	tomm20a	100	64.087	ENSPNAG00000000523	tomm20a	93	65.234	Pygocentrus_nattereri
ENSORLG00000012510	tomm20a	87	48.432	ENSRNOG00000016391	LOC100912163	98	48.273	Rattus_norvegicus
ENSORLG00000012510	tomm20a	99	47.012	ENSRBIG00000042029	ARID4B	96	49.213	Rhinopithecus_bieti
ENSORLG00000012510	tomm20a	54	61.255	ENSRROG00000045203	ARID4B	100	52.609	Rhinopithecus_roxellana
ENSORLG00000012510	tomm20a	100	50.540	ENSSHAG00000015214	ARID4B	100	51.662	Sarcophilus_harrisii
ENSORLG00000012510	tomm20a	100	59.153	ENSSFOG00015000132	arid4b	100	61.048	Scleropages_formosus
ENSORLG00000012510	tomm20a	75	48.713	ENSSFOG00015008923	tomm20a	100	51.693	Scleropages_formosus
ENSORLG00000012510	tomm20a	100	76.158	ENSSMAG00000010430	tomm20a	100	77.194	Scophthalmus_maximus
ENSORLG00000012510	tomm20a	100	80.611	ENSSDUG00000003019	tomm20a	100	80.934	Seriola_dumerili
ENSORLG00000012510	tomm20a	100	79.893	ENSSPAG00000007358	tomm20a	100	80.383	Stegastes_partitus
ENSORLG00000012510	tomm20a	69	66.630	ENSTRUG00000002893	tomm20a	100	66.923	Takifugu_rubripes
ENSORLG00000012510	tomm20a	70	68.127	ENSTBEG00000003961	ARID4B	69	67.883	Tupaia_belangeri
ENSORLG00000012510	tomm20a	54	59.837	ENSTTRG00000002228	ARID4B	100	52.319	Tursiops_truncatus
ENSORLG00000012510	tomm20a	87	44.335	ENSVVUG00000008154	ARID4B	99	51.504	Vulpes_vulpes
ENSORLG00000012510	tomm20a	100	49.184	ENSXETG00000024651	arid4b	56	57.989	Xenopus_tropicalis
ENSORLG00000012510	tomm20a	100	78.084	ENSXMAG00000006538	tomm20a	100	78.314	Xiphophorus_maculatus